RNA id: XM_026936645.2


Basic Information

Item Value
RNA id XM_026936645.2
length 3258
RNA type mRNA
GC content 0.52
exon number 7
gene id klhl6
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26666239 ~ 26674011 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGGAGCTGAAAACATCAGCACTCGTAACACGCTGTAACTCTCGTTGCACTTAATCACACTTCTTGGTGTTCCTCTCAGCACCAAGTGAAGAAACGATGAGTGACTCTGTGGAGAAAAGTTCAGACTCTCCTGCGCAGATGGAAAGTTCTGGAGCTGGTGGACTGTTGAACCTCTCTCTTCACAAGAAGCTGGATGACGAGAGTGTGATCTTTAATGACTCAAGTCTCTCAGAGCAGATCCACGCTGAGCTCCAGGGTCTGCGTCTGGACCACTGCCTCACCGACGTTGTCCTCTGCGTCCAGGATGAGAAGTTCTCTTGCCACAGAGCCATCCTTGCTGCTGCCAGCTTGTATTTCAGAGCAATGTTCTGTACGGACCTGCGAGAGAAATATGAACAGTGCGTGAACATTCAGGGAATCGATGCAGAGGACATGAAGATGCTGCTGGACTACACATACACTAGTAAAGTACACATCACCAAAGACAACGTCCAGAAAACTCTGGAGGCAGCCAGTCTCTTCCAGTTCCCGCGGGTGATGGAGGCATGCGCTCATTTCCTGGCTGAGTCACTCCACCCAGAGAACTGTGTTGGGATTCTGCGTCTGGCTGACACACATTCGCTGGTGGAGCTGAAGGCTCGTGTGCATGAGTACATCATGCAGAACTTCGGGCGTGTGGTGGAGCATGATGAGGTTCTGGAGCTGCCGCTGGACGTGCTGGTGGAGCTGTTGCGGAGAGATGAGCTGGCCGTGAGCaatgaggagtgtgtgtacgAGGCGGCCATGCACTGGGTGAAGGCGCGTCAAGCCGAGCGCCTGCCCTCGCTGGCCCGGGTTCTCACACACGTGAGACTCCCACTGCTAGAACCCTGCTACTTCCTGGAGAAGGTGGAGAGTGACGCCATGATCCGCTCCTGCACCGAGGTATTCCCACTTTTACAGGAGGCTCGAGCTTATCACCTGTCTGGCAGCGAGgtgatTTCAGAGCGCACTAAGCCCCGCCTCCATCAGTACCAGTCGGAGGTGTTTGTGATCATCGGTGGCTGCACTAAAGATGAGAAGTTTGTTTCGGAAGTGACATGTCTGGACCCCCTACGCCGGAGTCGCCTGGAGGTGGCCAAACTGCCCGGCACTGACACCGAGTCTGAGAGTGACACCAGGAAGTGGGTGGAGTTCGCCTGCGTCACCTTCAGAAATGAAGTGTATCTCTCAGGTGGTAAAGAGACGCAGCATGATGTGTGGAAGTACAACGCTTCGCTGAATAAGTGGATCCAGGTGGAGTACCTGAGCATGGGACGCTGGAGGCACAAGATGGCAGTGTCGGGGGGGAAGGTTTACGTGATGGGGGGATTTGATGGTGTTCAGAGACTCAGCAGTGTGGAGGCATATGACCCCTTCCACAACAGCTGGACAGAGGCTGCTCCTCTGCTAATCGCCGTCAGCTCGTTTTCTGCTGCTAGTTATGGCAATTGCGTCTTTGTCATTGGAGGTGGACCAAATGGAAAACTGGCCACCAACAGCTTGCAGTGTTTTGAAGCAGCAGTGAATAAATGGACATTAAAAAGCCCGATGCCCATCGAAGCTAAATGCACTAACGCTGTAACGTTCAGGGACTCCATCTACGTCGTGGgcggaGCGATGAAGGCGTTGTTCAGCTACAGTCCAGGCATGGACGTGTGGACGTTGGTCACTCAGCTGGGCAGTGAGCGTGCGAGTTGTGGGCTCTCAGCGTGCTGTAATAAGCTCTTCATCACCGGGGGGAGGGACGACAAGAACGCTGTCATCGCCACGGTTCTGTGCTGGGACCCGGACAAGAACACACTGACGGAGGAGTGTGTGCTGCCCCGCGGCGTCTCCCATCATGGCAGTGTGACGCTCAGGAAGTCCTACACACACATCCGCAGGatcgcacccacacacaccgaGTGAGGTCATCTTCACGTTTACACATGAAAACCAACGGAGAACCCAAAACACTGCACAGCTCTGACTCTCaataagaaacattttattaaaataaaaagcatataaAGATACAAACTTAATGCACTTGATGTAAAAGCAAAGCAGCGTGTAGGACAGAGCACAGAAATCCAGCTGTGCTCCATCATCACATGTGCACACGTGGCTCACACACACGTTTTTCCCTGATACACTTGCGTGCATTATTCAAGTCTGATGGAAAAAAGGACATAAAAAGGCATCAgtgtttttcagcttttcaaTGTGAAGCTCAATGGTGAataagccccgcctcctgcTTTCCCATCATGCCGTTCAACAGGACAGGAAGTCCTCACGTTCCTCTGAGTGGCTGTGTAATGGTCTCAAAGCTAAAACTGGAGCTCCGCCCATGGGAAACAGCCTCTCAAGGCTGAAAGGATTTTGATTGGCTATGTGCAACAACCAATGAAAATGCACTAGAAGCTGCGTTACATATTTGGTACACATTACTAGTGTAACTTTGTGCGTTTGTTTAGTCTTTGATACATGTGTTGTCTCCCCGCTCCGTGcattatgctagctagctatcagTTAAGCACTTAGCTAAATGTTGCCAGTAATGCTAAGAGCTCAGTAGCTATAGCATTATGTTAATGTCCACTGGTGTTAGCTCCCAGTTTGTCATAATTGATGTAGATTCTAGCCAATCAAATCCTGTGTTCTTTTGTAAACCCCGCCTCCTCTACATTCTTACTGGTTCCATGACCacataaccaatcagaatcctcTCTGGCCACAGAGCCAGTGTGAGACAGGAAGTTCACCTGCGGTGGCGAGAATGTGCGGACCGTGTTCTGCGCTCATTTTTACGCTCGTAATCACGTGAACGTCCACCATCATGTGACCGCTCCCGCTCTCTTCTCTCCCAGCGCTCATGTCTGCGTTTCCCATCATCGCGGTGACGGCCCCGTGAGTTGCTACGGGAGCGGGAgcgtctctgtctgtctccacgGCGACTCTGATCATTCCGAACTTGCGGTGACCTCTGGCTTCGGTGTTGCCGTGGCGATGGGCTGTGGCTGCTGGGGGAGCTGTAGGTTCCTGAACGACTCCGACTGAGGAGGAAGAAACAAAAGTCACACATTTATGACTGATGATAACCACACCTGGTCTCACGTCTCCATGGTAACTGACTCACCGTGTGGGAGGAGAAGGGGATCTAGAGCGCCCCCTGGAGGCAGAGTGGCCGTTCTGCATGACTCCACTGTCCTCCTTTTTCAcactgtgaaggaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K10444 KLHL6; kelch-like protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84702 lncRNA upstream 115213 26472575 ~ 26551026 (+) True G71485
TU84695 lncRNA upstream 201925 26464011 ~ 26464314 (+) True G71482
TU84608 lncRNA upstream 371257 26294755 ~ 26294982 (+) True G71408
XR_004578087.1 lncRNA upstream 439824 26225431 ~ 26226415 (+) True LOC117597184
XR_004578086.1 lncRNA upstream 440875 26224918 ~ 26225364 (+) True LOC117597183
TU84789 lncRNA downstream 110561 26784572 ~ 26786560 (+) True G71550
TU84796 lncRNA downstream 134046 26808057 ~ 26856605 (+) True G71557
TU84807 lncRNA downstream 198665 26872676 ~ 26881469 (+) True gng7
TU85145 lncRNA downstream 368692 27042703 ~ 27042912 (+) True G71819
TU85154 lncRNA downstream 399830 27073841 ~ 27074076 (+) True G71827
XM_026936646.2 mRNA upstream 2524 26643100 ~ 26663715 (+) True pak2a
XM_026936648.2 mRNA upstream 2524 26643100 ~ 26663715 (+) False pak2a
XM_026936647.2 mRNA upstream 2524 26650575 ~ 26663715 (+) False pak2a
XM_034303686.1 mRNA upstream 24005 26632809 ~ 26642234 (+) True ing5b
XM_026936650.2 mRNA upstream 24005 26632817 ~ 26642234 (+) False ing5b
XM_034304037.1 mRNA downstream 11499 26685510 ~ 26688014 (+) True ptx3b
XM_034304038.1 mRNA downstream 11499 26685510 ~ 26688014 (+) False ptx3b
XM_026936651.2 mRNA downstream 15026 26689037 ~ 26696324 (+) False pdcd10b
XM_034304158.1 mRNA downstream 15026 26689037 ~ 26696324 (+) False pdcd10b
XM_026936653.2 mRNA downstream 15036 26689047 ~ 26696324 (+) False pdcd10b
XR_003404105.1 other upstream 2157 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 290460 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 302006 26353189 ~ 26364233 (+) False LOC117597079
XR_003404061.2 other upstream 373455 26288290 ~ 26292784 (+) True zgc:66427
XR_003404108.2 other downstream 439137 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 815242 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 882506 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 883754 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 946594 27620605 ~ 27620677 (+) True trnat-ugu_6

Expression Profile