RNA id: XM_026936646.2


Basic Information

Item Value
RNA id XM_026936646.2
length 3495
RNA type mRNA
GC content 0.45
exon number 14
gene id pak2a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26643100 ~ 26663715 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTCCGGGTTAGGGAAaggactacatttcccatcatgcaTCGAGTCTCCGACGAGCCGATGGACGGAACCCGTTTGCAGCGGAGCTTTGGTGGCTGTTCGAGTTTGAGGGAAACTTTTAGCAGGAGCTCGCGTGAAGGTTACTGTGTGAAgctctgtgactgtgtgagtgagtgtgtgtgtgtgtgtgtgagagagtgagtgtgtgtgtgtgtgatgtgtgataacGGAGAGTTGGAGGACAAACCCCCCGCCCCCCCAGTCAGGATGAGCAGCAGTAGTAAAGACGGCGTCCCCAAACCGCTGCCTTCTGTCCCCGAGGAGAAAAAAACACGCAAAGGGATCTACTCCATCTTCTCTGCTGAGAAAGCAGGGAAGCGTAAAGATAAGGATAAGGAGAGGCCGGAGATTTCGCATCCCTCAGACTTTGAGCACACGATTCACGTCGGGTTTGATGCCGTGACGGGCGAGTTCACTGGAATGCCAGAGCAATGGGCGCGGCTCCTCCAGACCTCCAACATCACCAAGTCGGAGCAGAAGAAGAACCCACAGGCCGTCCTCGATGTGCTCAAGTTCTACGACTCAACCGGAAATGGGAAGCAGAAATACCTCAGCTTCACAGataAAGATGTTCCCCAGGTGAAGAAGGGGTCAGAGCCGGTACCTGGTGGTGTTAAAGATGAtttagatgatgatgatgatgaagccCCACCCCCTGTGGTGGCTCCTCGACCTGAACACACCAAATCAGTTCTCACTCGTCCGTCGATGATTgaccctcttcctcctccagacGCCAAATCTGCAGATAaacagaagaaaggaaaaggaaagatgACGGATGAGGAGATCATGGAGAAACTAAGGACAATAGTGAGCATCGGAGACCCGAAGAAGAAATATACACGATATGAGAAAATTGGACAGGGTGCATCCGGTACTGTGTTTACTGCTATTGATGTTGCTACAGGACAGGAGgtggcTATAAAGCAGATTAACTTGCAGAAGCAGCCGAAGAAGGAGCTTATCATTAATGAGATCCTGGTGATGAAAGAGCTGAAGAACCCTAACATCGTCAACTTCTTAGACAGtttcctGGTGGGGGAGGAGTTGTTTGTGGTAATGGAGTATTTAGCTGGTGGTTCTCTGACTGACGTCGTTACAGAGACATGTATGGATGAAGCGCAGATCGCTGCTGTGTGCCGAGAGTGTCTGCAGGCGCTCGAATTCCTGCATGCTAATCAGGTGATTCACCGAGACATAAAGAGTGACAACGTGCTGCTGGGCATGGACGGCTCTGTTAAACTCACGGATTTCGGGTTCTGCGCTCAGATCACCCCGGAGCAGAGTAAGCGCAGTACGATGGTGGGAACGCCGTATTGGATGGCCCCTGAGGTGGTGACCCGTAAAGCGTACGGACCCAAAGTGGACATCTGGTCTCTGGGCATCATGGCTATAGAGATGGTGGAGGGAGAACCACCATACCTCAACGAGAACCCACTGAGgGCTCTGTATCTCATCGCCACTAACGGAACTCCGGAGCTGCAGAACCCTGAGAAACTGTCTCCCATCTTCAGAGATTTCCTCAACCACTGTCTGGAGATGGACGTGGAGAAGAGATGGAGCGGCAAAGAGCTGCTGCAgCACTCGTTCCTGAAGCTAGCGAAGCCTCTGTCCAGTCTCACCCCCCTCATCCTTGCCGCCAAGGAGGCCATGAAGAGTAGCCGCTAACCCCGGACATGCCCCGCCCGCCTACTgggtgtgggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttatcgtATATATGCAATCAACCAAACCGCTGCATGGTCAGATGTGGACGTGTCCTCACAcaaatctgattattttattattattaaagttattagacagacacagcagtgtgtgtgtgtgagtgtggagcTGCAGGGCCTCTGAGTTACTTTGGCAACTTTACGCTACCAGCAGAGGAAGAGGGGAGAAATGCAGTAAATTTTCTGACAGTGAACCACGCTAATGGCTAAATACCACCGGATAATCACTAATAAACACAACGGTCACCGCGACAAGCACATGAGGCTAGAAATGAGGTTTTAACTTGTAGAGCAGCTGCAGCCAAACAGGGGGCGCTTTCCTGAAGAGTCACTTTATAGTGATATTACTGAACATGTGAACGAGTGCAAAACTGCGAACACGGTTAagtctgaataaaaataaaacattctgaaGGGAAATCATTCATTGAACTCTTCAGTTCTGCTCCATTGAGCTCTTCAGTTCTTCTCAGGAGGGGTGGTGAGAAAGTCAAACACCGTCCCTCACTCCTATTGGTTGGCATAAATTTTGCCTAAAGTAAAACATCTCGAAACTTTTTGCTGGCCCCATTTCGTATAACATTTGCGTAAAGGTAAACTCTCTTATCTTTACACCTTTTTTCCTGGTTTGCCGGCCCCACCCACTTTACATCACCAGCATTGGCTCCGATTCCTGTCACTGTAAACATCCCAGGGTTAATAGAACAGCATTACTGCGCTGAAGTGCCAGCTGATGTTGGGTGCGGTTGCCATAGAAACGTACCAGGATGAGACCTAGGGGTGTAAACTTTACTGGAAATGAAAGTCTGTCAGTGTGAGCAGTTCTTTAAGGTTCTAGAATCTTCTGATCAGAACCAGAAGTGCAgccaggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgattgtgtgagcgcgcgtgtgcgtgtttgtgtgtgctagTGTCTTTCCAATTTCCAAACAAAAAGATTTTTCTTTCAGTATTCCACAAACTGTAAGATTTATAAATCTACACAGTAATAAATCTTGTAttttatcataatttttttgtttttcatcatcatcgttGTTGCCTTGGTTACATCAGACACCACCTGAGTGTCTGTGTCATCCTTAATaattctctttgtttttttaatctttcttttttccctatttCTATGGaagtgcttattattattattattgttattattattattattgagaaCATTCTAGAGCTTCACCTTTCACATGTCCCATGTGGGCTTCCATAGCACGATGTCTTCTTTAACACTGCTGTATCTCTGCGGAGGAggttttggatttttgttttcctttttttttattttaatttcttttcctgTAATGTCTGTGTGATCATGTGTTAGGAATCTAATAAATGTAAGAAATGGTTTTGTATATGATGTATTTCCATTAGCACAACAGGAATCAGGAAGTTTTTGTCTctgactttgtttattttttttttatatttatgtacatgtataacaatattttatattgtacatgtataactatattttatatttttcaactAACAATCTGATAACTGCAAATTAAACCTCTTTAACTGTTgccttaaaaatgaataaattttgtgaaatctaactttt

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006950 response to stress biological_process
GO:0000910 cytokinesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001568 blood vessel development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0007409 axonogenesis biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84702 lncRNA upstream 92074 26472575 ~ 26551026 (+) True G71485
TU84695 lncRNA upstream 178786 26464011 ~ 26464314 (+) True G71482
TU84608 lncRNA upstream 348118 26294755 ~ 26294982 (+) True G71408
XR_004578087.1 lncRNA upstream 416685 26225431 ~ 26226415 (+) True LOC117597184
XR_004578086.1 lncRNA upstream 417736 26224918 ~ 26225364 (+) True LOC117597183
TU84751 lncRNA downstream 4047 26667762 ~ 26668128 (+) True G71519
TU84789 lncRNA downstream 120857 26784572 ~ 26786560 (+) True G71550
TU84796 lncRNA downstream 144342 26808057 ~ 26856605 (+) True G71557
TU84807 lncRNA downstream 208961 26872676 ~ 26881469 (+) True gng7
TU85145 lncRNA downstream 378988 27042703 ~ 27042912 (+) True G71819
XM_034303686.1 mRNA upstream 866 26632809 ~ 26642234 (+) True ing5b
XM_026936650.2 mRNA upstream 866 26632817 ~ 26642234 (+) False ing5b
XM_034304150.1 mRNA upstream 14763 26614602 ~ 26628337 (+) True si:dkey-127k13.1
XM_026936989.1 mRNA upstream 30881 26610170 ~ 26612219 (+) True LOC113540476
XM_026936990.1 mRNA upstream 30881 26610170 ~ 26612219 (+) False LOC113540476
XM_026936645.2 mRNA downstream 2524 26666239 ~ 26674011 (+) True klhl6
XM_034304037.1 mRNA downstream 21795 26685510 ~ 26688014 (+) True ptx3b
XM_034304038.1 mRNA downstream 21795 26685510 ~ 26688014 (+) False ptx3b
XM_026936651.2 mRNA downstream 25322 26689037 ~ 26696324 (+) False pdcd10b
XM_034304158.1 mRNA downstream 25322 26689037 ~ 26696324 (+) False pdcd10b
TU84616 other upstream 267321 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 278867 26353189 ~ 26364233 (+) False LOC117597079
XR_003404061.2 other upstream 350316 26288290 ~ 26292784 (+) True zgc:66427
XR_003404105.1 other downstream 256 26663971 ~ 26664082 (+) True LOC113540735
XR_003404108.2 other downstream 449433 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 825538 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 892802 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 894050 27557765 ~ 27557902 (+) True LOC113540696

Expression Profile