RNA id: XM_026936649.2


Basic Information

Item Value
RNA id XM_026936649.2
length 2308
RNA type mRNA
GC content 0.51
exon number 11
gene id ccnl1b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26672747 ~ 26678848 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCGGTGCTGCTTGACTTCCGGAACGTAAACTTTCCGTTGGGAGGAAATTTACTAGCCGGCATTTTTTTCTACACCGAGATTATAAAAAATGTCTTCGGGTGTTTTATCCCCGAGTGTGTCGGCTCCGGCTCCGGCTCCGGCTCCGGCAGGTAACCCGGGGATTGTGATCGGAGATGCGGTTTATTCGGGAGTTTTGTTggccatagacagctctctggtgcCGGAGCAGAGGCGCTCGGAGACTCCGTCCATGCGGGACGGGCTGGAGCTCCACACCGAGACCGAGCTCAGGATCCTGGGCTGTGAGCTCATCCAGTCCGCGGGGATCCTCCTCAGACTCCCACAGgtTGCCATGGCGACAGGACAGGTCCTCTTTCAGCGATTCTTTTACTCCAAATCTTTCATCAAGCACAACTTTGAGatcaTGGCCATGGCGTGTGTGAATCTCGCCTCTAAGATCGAGGAGTCTCCGAGGAGAGTGCGTGACGTCATGAACGTGTTCCATCACCTGAAGCAGGGAGGAGGGAAGAGAAGCGCTCCACTGTTCCTGGATCAGAATTACATCAACACCAAAAACCAGGTGATTAAAGCCGAGCGGCACGTACTGAAGGAGCTCGGCTTTTGCGTCCACGTCAAACACCCGCACAAGatgatcGTGATGTACCTGCAGGTGCTGGAGTGTGAGAAGAATAAGGTCCTGGTGCAGACAGCCTGGAACTACATGAACGATGCGCTCAGGACCGACGTGTTTGTGAGGTTTGAACCAGAGACCATCGCGTGTGCCTGTATCTACCTGGCTGCTCGGGCTCTTCAGatTCCCCTCCCCACCAAGCCGCACTGGTTCCTCCTGTTCGGAGCATCAGAGTCGGATATCAGGGAAATTTGCATCAGCACACTGAAGCTGTACTCCAGGAGTAAGCCGGCCATTGCTCAGTTGGAGAAGGAggtggagaagaagaagatgtgTCTTGAGGAGgagaagctgaagatgaagggTGTGAACTACAGCGTCACTCCAGCTCTCAACCACACCAGCACCTTCTCTCCTGCTTCTAAACCTGGTTCTCCAAGGGAGGTTAAGACTGAAGAAAACGGTAAACaagtgagagaggagaaagaggagcgACACCTGAACTCCAAAAGCCCCatcaccagtgTGAAAAAGGAGGACAGTGGAGTCATGCAGAACGGCCACTCTGCCTCCAGGGGGCGCTCTAGATCCCCTTCTCCTCCCACACGTCGGAGTCGTTCAGGAACCTACAGCTCCCCCAGCAGCCACAGCCCATCGCCACGGCAACACCGAAGCCAGAGGTCACCGCAAGTTCGGAATGATCAGAGTCGCcgtggagacagacagagacgcTCCCGCTCCCGTAGCAACTCACGGGGCCGTCACCGCGATGATGGGAAACGCAGACATGAGCGCTGGGAGAGAAGAGAGCGGGAGCGGTCACATGATGGTGGACGTTCACGTGATTACGAGCGTAAAAATGAGCGCAGAACACGGTCCGCACATTCTCGCCACCGCAGGTGAACTTCCTGTCTCACACTGGCTCTGTGGCCAGAgaggattctgattggttatgtGGTCATGGAACCAGTAAGAATGTAGAGGAGGCGGGGTTTACAAAAGAACACAGGATTTGATTGGCTAGAATCTACATCAATTATGACAAACTGGGAGCTAACACCAGTGGACATTAACATAATGCTATAGCTACTGAGCTCTTAGCATTACTGGCAACATTTAGCTAAGTGCTTAActgatagctagctagcataatgCACGGAGCGGGGAGACAACACATGTATCAAAGACTAAACAAACGCACAAAGTTACACTAGTAATGTGTACCAAATATGTAACGCAGCTTCTAGTGCATTTTCATTGGTTGTTGCACATAGCCAATCAAAATCCTTTCAGCCTTGAGAGGCTGTTTCCCATGGGCGGAGCTCCAGTTTTAGCTTTGAGACCATTACACAGCCACTCAGAGGAACGTGAGGACTTCCTGTCCTGTTGAACGGCATGATGGGAAAgcaggaggcggggcttatTCACCATTGAGCTTCACAttgaaaagctgaaaaacacTGATGCCTTTTTATGTCCTTTTTTCCATCAGACTTGAATAATGCACGCAAGTGTATCAGGGAAAAACGTGTGTGTGAGCCACGTGTGCACATGTGATGATGGAGCACAGCTGGATTTCTGTGCTCTGTCCTACACGCTGCTTTGCTTTTACATCAAGTGCATTAAGTTTGTATCTttatatgctttttattttaataaaatgtttcttattGAGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K23966 CCNL; cyclin L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84986 lncRNA downstream 902 26671641 ~ 26671845 (-) True G71700
TU84985 lncRNA downstream 1211 26671260 ~ 26671536 (-) True G71699
TU84984 lncRNA downstream 1609 26670267 ~ 26671138 (-) True G71698
TU84983 lncRNA downstream 4189 26668295 ~ 26668558 (-) True G71697
TU84982 lncRNA downstream 5017 26667063 ~ 26667730 (-) True G71696
TU84990 lncRNA upstream 10222 26689070 ~ 26690394 (-) True G71704
TU84992 lncRNA upstream 16098 26694946 ~ 26696321 (-) True G71705
TU84994 lncRNA upstream 18045 26696893 ~ 26697097 (-) True G71707
TU85024 lncRNA upstream 168498 26847346 ~ 26859455 (-) True G71734
TU85022 lncRNA upstream 174419 26853267 ~ 26856672 (-) True G71732
XM_026935989.2 mRNA downstream 76757 26578794 ~ 26595990 (-) False sppl2
XM_026935988.2 mRNA downstream 76757 26578795 ~ 26595990 (-) True sppl2
XM_026935883.2 mRNA downstream 219916 26446458 ~ 26452831 (-) True si:dkeyp-66d1.7
XM_034303639.1 mRNA downstream 296339 26371921 ~ 26376408 (-) True ltb4r2b
XM_034303641.1 mRNA downstream 304798 26338735 ~ 26367949 (-) False sdr39u1
XM_026936093.2 mRNA upstream 29234 26708082 ~ 26712304 (-) True slitrk3b
XM_034303683.1 mRNA upstream 91734 26770582 ~ 26786518 (-) True copa
XM_026935911.2 mRNA upstream 108239 26787087 ~ 26790914 (-) True pex19
XM_034304027.1 mRNA upstream 113175 26792023 ~ 26805367 (-) False map1sb
XM_026936912.2 mRNA upstream 113175 26792023 ~ 26805367 (-) True map1sb
TU84853 other downstream 121717 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 121717 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 296659 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2367821 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2635893 24036718 ~ 24036854 (-) True LOC113540746
TU85159 other upstream 417754 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 524935 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 716509 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 717303 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 749572 27428420 ~ 27432678 (-) False LOC113540508

Expression Profile