RNA id: XM_026936654.2


Basic Information

Item Value
RNA id XM_026936654.2
length 7095
RNA type mRNA
GC content 0.51
exon number 28
gene id lamc1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31619845 ~ 31684467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGAGTTCTCAGCCGGAAGTAGATGTAGAAAGTTTTTTCCGCAGTGGAGCTGCTGGACCTGCGCACTAGCGGGCAGGGTGTAGCCTGTAGCCTGGTCAGATGTAGAACTTTTCCTCTGCGACTTTTCTCCTTCATGGCGGCGCTCAGGGATCAGTAGCTGAAGAAGGAGCGGAATAAagtggagaaaagagagaagagaaaggagagaataCAGAGCAGGAAGGGTGGAAGTGCATGGTTTTGTCTGGGGCTCCGCAGGGCTGTTGAGAAGGCGCAGGGAGAGCAGGAACAGGAAGGTGCTCGGTTTGGGGAACGCGCCAGGACGCACGGAGACGACAATGCGCGGCGTGGCTCTGGCTCTGCTGGCTCTGCTGGCCGTGTGCGCGCGGCGCGCTCACGCAGCCATGGACGAGTGCGTGGACGAGCTGAGCCGCCGGCCTCAGAGCTGCATGCCCGAGTTCGTGAACGCGGCGTTCAACATGACCGTGGTGGCCACCAACACATGCGGCTCTCCTCCTGAAGAGTACTGCGTGCAGACCGGCGTCACCGGAGTCACCAAGTCGTGCCACATCTGCGATGCCCGAGACCCGAGACAGCATCACAGCGCCGTCTACCTCACCGACTACAACAACCAGGCGGACATCACCTGGTGGCAGAGCCAGACCATGCTCGCAGGAGTCCAGTACCCCACCTCCATCAACTTAACCCTGCACCTAGgaaaggcCTTCGATATCACCTACGTGCGTCTGAAGTTCCACACCAGCCGCCCCGAGAGCTTCGTCATCTACAAGCGCACGCGCGAGGACGGCCCGTGGATCCCGTACCAGTACTACAGCGGCTCGTGCGAGAAAACCTACGGCAAGGTGAACCGAGGTTTCATCCGCACCGGCGAGGACGAGCAGCAGGCGCTCTGCACGGACGAGTTCAGCGACATCTCGCCGCTCACCGCAGGAAACGTGGCCTTCTCGACACTCGAGGGACGCCCCAGCGCATACAACTTCGACAACAGCCTGGTGCTTCAGGATTGGGTGACTGCGACAGACATCAGAGTGACCCTGAACAGGCTGAACACGTTCGGAGATGAAGTGTTCAACGACCCCAAGGTCCTGAAGTCGTACTACTACGCCATCTCCGACTTTGCTGTGGGAGGAAGGTGCAAGTGTAACGGCCACGCCAGCGAGTGTGTGAAGAACGAGTACAGCAGGCTGGTGTGTAACTGCAAGCACAACACAGAGGGCGATGACTGCAACGTGTGTAAACCCTTCTATAACGACCGGCCGTGGAAAAGAGCCACCACTGACAACGCCAACGAGTGCCTGCcatgtaACTGCAATGGCAAGAGCAGCGAATGTTTCTTCGACCCGGCTCTGTACCGTGCCACGGGTCACGGAGGTCACTGCCGCAACTGCGCCGACAACACGGACGGCCCCAACTGCGAGCGCTGCCTGGACAACTACTACAGAGTGGGTCCAAACCAGCGCTGCCTGCCCTGCAGCTGTAACCCTGTTGGCTCTCTGAGCACTCAGTGCGACAACACGGGCCGCTGTAGCTGCAAACCGGGTGTGATGGGAGATAAGTGTGACCGCTGCCAGCCCGGATACCACTCCCTGACCGAGGCAGGCTGCAGCCCCTGCTCCTGCAACCCTGCCGGAAGCACACAGGAGTGCGATGTCAATACAGGACGCTGCCAGTGCAAGGAAAACGTGGACGGCTTCAGCTGCGACAGGTGTAAACTCGGCTTCTTCAACCTGGACCCCCAGAATCCTCAGGGATGCATGCCGTGCTTCTGCTTCCATCATTCCACTGTGTGTGCGAGTGCAGAAGGCTACAGCATACACACCCTCAAGTCCACCTTTGATCAAGGTGATGAAGGCTGGAAGGGTCAGCAGAGAGACAGCTCCAGCGTGCCAGTGCACTGGTCTCCGAGCTCTCAGGAGATCTCGCTCATTTCAGAGGATTACTTCCCCATGTACTTTGTGGCTCCAGAGAAATTTTTGGGGAACCACATCCTGAGCTACGGTCAGAACCTGACACTCAACTTCCGGGTGGATCGCCGTGACACTCGTCTTTCAGCCGAGGATGTGGTGCTGGAGGGGGCAGGACTCCGCATCGCTGTGCCGCTCATCGCTCAGGGAAACGCTTATCCTGACGACCAGATGCAGACCTATGTGTTCAGGCTCCATCACACCCCAGACTCCTCTACCTGGAGACCAGAGCTGAAACACGCAGAGTTCCAGAAGCTTCTCCACAATCTTACTTCCATCAAGATCCGTGGAACCTACAGCGAGAGAAGTGGTGGATATCTGGATAACATGTCTTTGGTGACTGCGCGGCGAGGACACGGGGATCCAGCACGCTGGGTGGAGAAGTGTTCATGTCCTCCCGGCTACGAGGGTCAGCACTGTGGGAAATGCGCTCTGGGATACAGGAGGAGCCAACCAGAGCTGGGTCAATTCAGCCCCTGTGAAACCTGCAACTGCAATGGCCACAGCGACACCTGCGACCCTGTAACAGGAATGTGTAACTGTGAGCACAATACATTTGGCATGAGCTGTGAGAGGTGTAAGGATGGTTTCTATGGCGATGCCACAGTGGGTTCGGCTTCTGACTGTAAACCGTGCCCGTGTCCTGCAGGAACCGCCTGCGCGATCGTGCCCAAAACCAAAGAGGTGGTGTGCACCAACTGTCCGCTCGGCACCACAGGGAAACGTTGCGAGCTTTGCGACGACGGATTCTTCGGCCCCCCACAAAAAGTTAACGGTGTAGTGAGGGTGTGCCGGGCGTGCAACTGCAACAATAACATCGACCCCAACGCCGTGGGCAACTGTGACCGCGATAGTGGCGAGTGCCTCAAGTGCATCTACAACACGGACGGCTTTTTCTGTGATCGCTGCAAAGATGGTTACTATGGCAACGCCTTGGCTAGCAACCCAGCTGAAAAGTGCAAAGCTTGTGCGTGCTCTCGGTACGGCACGGTGGACGGACAGAAGACCTGCACGCAGGTGACGGGGCAGTGCGAGTGTCTCCCTCACGTCACCAACCGAGACTGCAGCGCCTGTGAGCCCGGCTACTACAACCTTCAGAGCGGAGAAGGCTGCCAACGCTGCAACTGCAACCCTGTTGGCTCCACGAATGGGCAGTGTGACATTGTGAGTGGACAGTGCGAGTGCCAGCCTGGGGTCAAGGGTCAGCACTGTGAGCGCTGTGAAGTCAACTTCTTCGGCTTCAGCTCGTCTGGATGCAAACCCTGCGACTGCGACCCTGAGGGCTCGCGGACGGCTCAGTGCAGAGACGACGGCCGGTGCGAGTGTCGGCCCGGCTTCGTCGGTAATCGCTGTGATATGTGTGAGGAGAACTACTTCTACAACCGCTCTGTCTCTGGCTGCCAACAGTGTCCCAACTGCTACAGTCTCGTCAGGGACAAGGTGAACCAGCAGAGACAGAAGCTCCATGACCTGCAGAATCTGATCGACAACTTGGGCAGCCAGGATACAGTGAGCGACAAAGCCTTCGAAGACCGTCTCAAAGAGGCTGAGAAGACCATCATGGATTTACTGAAGGAGGCTCAGGCCAGCAAAGAGGTGGACAAAGACCTCTTGGATCGTCTTAAGAGCATCAACAGCACGCTGACGACGCAGTGGAACCGGCTGCAGAACATCAGGAACACCGTGGAAGACACCGGAAACCTGGCGGATAAGGCACGCAGCAGAGTGAGCGAGACGGAAAAACTCATCCAGCGGGCTAGAGAGGAGCTGGACAAGGCGAAGGATGCCATCAGCAAAGTGGATATCAAAATTCCCACAACCACTGGAGATCCGAACAACATGACGCTCCTGGCTGAGGAGGCGCGCAGTCTGGCAGAGAaGCATAAGACAGATGCAGATCAGATTGAGAAGATTGCGAAAGACGCTAACGACACTTCGACTAAAGCCTACAACCTGCTGATGAAGACGCTGGACAGCGAGGACAAGATCAACAAGGACATTGATGACCTGAACAAGAAGTACAACGAGGCCAAGGATCTGGCGAAGAACCTGGAGAAACAGGCCACTAAAGTACGAGctgaagcagaagaagcagGAGACAAGGCTATGAAGATCTACGCTAACCTGACCAGCCTGCCTCCATTCGATATCAGATCACTGGAGGATGAagccaataaaataaagaaggaGGCATCGGACCTGGATAAGCTTATCGATAAAACCGAGAGGGAATACAACGATCTAAGAGAAGACttgagaggaaaagaaaacgaTGTGCGCAGACTGCTGGAGAAGGGAAAGACTGAGCAGCAGACAGCGGATCAGTTGCTGGCACGGGCCGATGCAGCCAAGGCCCTGGCAGAGGAGGCAGCAAAGAAAGGCCTGTCCACATACCAGGAGGCGAAGGACATTCTCAACAACCTCCGAGACTTCGATAAGAGAGTGAACGACAACAAGACCACAGCGGAGGAGGCTTTGAAACGCATCCCACAAATCAACGCGACAATCAACGCAGCCAGTGAGAAGACTCGTCAGGCCGAGACGGCCCTCGGCAACGCGAGCGCCGACGCTAAAGAGGCCAAATCCAAAGCAGAGGAAGCTGAGAAAATCGCCAGCAATGTCCAGAAGGGTTCGGCTAAAACCAAAGCCGAAGCAGAAAAGGCCTTTGGTGACACGATGAAGCTGGACGACGAGGTGAAGGACATGATGAAGCAGCTGGCAAACGCAGAGAACGAgctggagaagaagaaagaagaggcAATGCAGGACATGATGATGGCTTCTATGGCATCAGACAACGCGAAGGAAGCAGAAGAAAACGCACGCAAAGCCAAAAACTCCGTCCGCACTGTTCTCGACGCAATCGCTGACTTACTCGGCCAGCTAGGCAACATTGACAAGGTGGATCTGAGTAAGCTGGACCAGATCGACAGATCTCTGAAGGAGGCCAAGGAGAAAATGGCAGGCAGCGACTTGGACAGGAAGCTGAAGGAGCTGAATGACGTGGCCAAGAGCCAGGAGGATATGATCACCGATTACGACCGGCAGATCCGCGAGATCCGTTCCGACATCGCCAACCTCAACGACATCAAGAACACTCTGCCGAACGGCTGCTTCAACACGCCGTCCCTCGAGCGGCCTTAacctctcatcctctcatcctctcatccctcCCTCTCCGCCCCTTCCTGTCTCTACTACACCTGTCGCCATCTAACATTTGGGGCAAGATGCCATCTTTTAccaaaatctctctcttttttttttttttttttttttgtttgttttagctgTGTTTTCTTCTCCATCAGTGAAGCCACATTTTTATCAAATCCGACAATTCACAGACAATAGCAGCTTTTTACTACCGCATATGCAATCATACTGAAAAGACAGGCTTGGAGAGGCGGCTTCTCGAGTTGTGTGACCGCACCATCTCCAGAACTTTTATTTCCTCCTCCATCCTGCCTTCAATCCCAGTGAAGCAGTCTCATCAGTTTGCTTGGAGAAGggtgtgatatttttttgttataactTTTTTAAGCTACTATCCAGCACATTACTTTATAACTCCAACTATTTACCATTGGTTCAGAAAACGGACAGTGAAGGAATCTTAGTTGCTGTTTTCTTTGtaatctgcctctctctctctctctctctctctctctctctccgcctgTGTGTGCGCTTTCACAAAGCTATAGACACCAGCTATCTGTGGCTGTGCAGAGAGAGCtagcaacacacactacagtacagtattCAGCTCGTCTCATCTTGTCTCATGAGCGTAACTGCAAACAGTGATGCACAGAAGCCGTGTAGATTCAGACTTCATATCCCGTTCACATTCAGCTCAGTGGTCTAAACACATTTCATGTAGTCATTCTAACGCTACACCGTCGTCATCTTCTATAAAAGCTGCTGCTTCCTTACAGGTGTACTGCAAATCACAcgttcacatttttattttcaaggcAAAATTTCAACACTATGCAACTTTGTACATTTGCGCAGCGAGACTTATCTGATACACTGGTGCtaataattatttcaaatgttatatttttgtgtgaatgttttttttaattattattattatgatatagagtgaggattttttttttttttttttttgtgtaaatatattcTTAAATGTTTCAGGAATGGCTGATTTTTGAAACTCCATCACCACCCAGCCAGCTGTAGGTTATTTCACAAGAGAAAATCAGCTAAAATCTCCACCTCCataatatataaatctatatatatatcaagtTCTGTGGTATAATATGCTTGCTTGTATACATGGCTAATTTTTTGTTGCCTCATAGCGCtgccatttattttaattgtgtttaattcTCAGCGGGtggttaattaataaataaaaaaagatataatgCTTTTGTAAGAAGAACACTCCCTTAACTAAAACTGCCTAAACACGTACAAGATGGCTAACATTTCAAAAAGTGTTTTGACAGCTAGCTGGTCACGTGACTAGTTCAGCAGATATGATGGTGTCTTGTGCCTTAACTGCTGGAGAAGATCGTCAGCCCACCTACTCCAAgatttatatacttttttttttataaggctGTACTCAGAAAATGTGCACACACTATGCGATTCTTGTTGTCACTTGTTTTGAAGAAGCAGGAAGAGTATTAAGCACTCCGCTACAGATACAGCTTCTCAGAGAAATTATTACtcattttttgtctcatttctgGTCATGAATGGCTTTGACACTCCTACTTTATGTATATTTCCTGGTGAATTTATCCTGAACACTTCTTCGAAACCTCTCGCATTACCACTGTGGACACGAGTGCAACATGTACACAGTTATGTATACAACAGTATTTCTAATTTATAATAGAACAAGTATTTGTTTATGCTGTTCTTcagtatgtgggtgtgtgttgcaCAGTCTTTAAGTTGGTTTTAAGCTCCTGCTTTCCTCTGTTGATCTTCAAggcactcttcacacacaccacacactcgaAAGGGCCTGAGAAACTCCAGCTTGTCACCCATTTGCCTGTTAAATCAAATTATaacatttgaataataaacTGTGGTTATTTCCTGATAACCTGA

Function

GO:

id name namespace
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0007634 optokinetic behavior biological_process
GO:0007155 cell adhesion biological_process
GO:0005604 basement membrane cellular_component

KEGG:

id description
K05635 LAMC1; laminin, gamma 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578069.1 lncRNA upstream 73050 31544698 ~ 31546795 (+) True LOC117597165
TU88025 lncRNA upstream 86622 31531453 ~ 31533223 (+) True G74309
XR_004578070.1 lncRNA upstream 88649 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA upstream 91775 31527856 ~ 31528070 (+) True G74315
TU87899 lncRNA upstream 263724 31355554 ~ 31356121 (+) True G74199
TU88103 lncRNA downstream 22761 31707228 ~ 31707436 (+) True G74370
TU88120 lncRNA downstream 50189 31734656 ~ 31743095 (+) True G74384
TU88089 lncRNA downstream 85354 31769821 ~ 31775982 (+) False LOC113540067
XR_004578059.1 lncRNA downstream 93654 31778121 ~ 31846428 (+) False LOC113540254
XR_004578058.1 lncRNA downstream 93658 31778125 ~ 31846428 (+) False LOC113540254
XM_026936824.2 mRNA upstream 9648 31596514 ~ 31610197 (+) True dhx9
XM_026936825.2 mRNA upstream 9648 31602387 ~ 31610197 (+) False dhx9
XM_034304000.1 mRNA upstream 25158 31587261 ~ 31594687 (+) False LOC113540625
XM_026937209.2 mRNA upstream 25168 31587261 ~ 31594677 (+) True LOC113540625
XM_026937095.2 mRNA upstream 33090 31584100 ~ 31586755 (+) True zp3f.2
XM_034303858.1 mRNA downstream 5708 31690175 ~ 31706269 (+) True lamc2
XM_034303620.1 mRNA downstream 48145 31732612 ~ 31753667 (+) True smg7
XM_034303622.1 mRNA downstream 48146 31732613 ~ 31753667 (+) False smg7
XM_034304128.1 mRNA downstream 75422 31759889 ~ 31776798 (+) False LOC113540067
XM_034304129.1 mRNA downstream 85360 31769827 ~ 31776798 (+) False LOC113540067
TU87898 other upstream 266701 31351261 ~ 31353144 (+) False c4h22orf39
TU87706 other upstream 521957 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 852713 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 852713 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1996808 29619993 ~ 29623037 (+) False asip2b
XR_004578111.1 other downstream 85355 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 261581 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 274555 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 274575 31959042 ~ 32330845 (+) False LOC117597173
LOC117597122 other downstream 276402 31960869 ~ 31965136 (+) True LOC117597122

Expression Profile