RNA id: XM_026936670.2


Basic Information

Item Value
RNA id XM_026936670.2
length 5005
RNA type mRNA
GC content 0.52
exon number 22
gene id astn1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25270222 ~ 25552839 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcgcacacacacacacacacacacacacacacgcacacataggggcaatttagaggcGACAATCCATCTACGTgtacttaaaaataattttaaataaatgcattttttacaAGGCTGCACGCTGTAACTAATGCATAACTGTTACAGTGAAATATACAGATGTAAGTGGTGCAATCAGGCTTATTTTGCTCAGGCACATCCTCCGCATCCTCACTGCAACGACAGCAAAGCGTTCAAATGGCTGCGCGTGGAGAGGCTGAGTAACCGAGTGAGGCTGATGCTGCTCCAGTGCTTCAGCGCCTCTCCTCGCTACGCCCAGCTTAACCATCAGCGCCAGCCCCAGCACCACGCCAGCGACCCTTCTCCCTCATCCAGAGCCGCGCGGAGTGTTTAATCGCCGTTCGGTTGCTTCTCGGAGCGGAAGCCTGCGCTTTTTCTCCGTCTCCTTCTCCCGCCTGTGACAGCCTCGCGCGCGGGACGCCGCAGTAAAATGGCTCCGCGCTCGCGTCCTCTCGCCGCCATCGTCTTGCTCGTTTTCGTCTCGGTGTCTCGCGGTCTGACAGGCGACGACGACCCGTCTCAGGACGCCGAGTGCAAGACGAAAAGCGTGACCGTGTCGGCGCTGCCGTTCCTCCGGGAGAATGACCTGAGCATCATGCACAGCCCGTCGGCCTCCGAGCCCAAGCTGCTCTTCTCCGTGCGCAACGACTTCCCCGGCGACATCGCGGTGGTGGACGACCTGGAAAACACAGAGCTGCCCTTCTTCGTGCTCGAGATTTCAGGGAGCTCGGAGGACATAGCCTTGGTGCGTTGGAGGCAGCAATGGCTGGAGAACGGGACGCTGCTTTTCCACATCCACCATCAGGACGGCAATCAGAATGCTGCGGGTGCCGACACTACTGAAGACCCAGCTAGTGACACTGCAGCAGAGGAGGAGCTGCGTATTCTGCACATCTCTGTGATGGGTGGGATGATTGCTCTACTGCTTTCCATCTTGTGCTTGGTGCTGATCCTGTACACACGGAAGCGCTGGTGTAAGAGGCGTCGGGTGCCTCAGCCTCAGAAGAGCGCGAGCGCCGAGGCAGCTAACGAGATTCACTACATCCCATCTGTGCTGCTGGGTGGTCAGGCGCGTGAGAGCTTAAGGAACTCCCGGTGCCAGGGTGCCAACGCCAGCGGCACCCTCAGTATCCGTGAGACGCCAATTCTCGATGGCTATGAGTACGACATTGGTGAGCTGCGCCAGCACCTGCAGCGTGAGTGCATGAACGGTGGTGAGGATTTCGCCAGCCAGGTGACGCGCACACTTGATTCGCTTCACGGCTGTAATGACAAGGCCAACGTGGATCTCACCCCTGcGGGTTCAGCTTTCCTGAACCCGGACGGGGATTCTGGGCCTGAGACAGATGGCGAGCCACAGCTCACCTTCTACACTGACCCCAACCGCAGCCGCCGCCGCAGCCGAGGTATGAGAAACGGTAACGCCAACCCAGCGTGGGGCTCCGGGGgctccccacgcAGTCCCATCAATAAGACTACCCTAACTTTGATCAGTGTGACGAGTTGTGTGATCGGCCTGGTGTACTCCTCTCACCTGTCATGTGGCCTGAATGTGCGTGTGGTTCTTCACGTACCTGAGCACCTCATTGCTGATGgttCCAGGTTTGTCCTGTTACAGGGTAGTCAGCTGGATGCCTCTGACTGGCTCAACCCTGCTCAGGTGCTGCTCTACTATCAGCAGAATGCCAGCGGGCCATGGCTTAGTGAGCTGTGTGGTCGTCGCCTTGTAGATCCCTGTGAACACCAGTGTGATCCtgacacagGTGAATGCCAGTGTTTTGATGGGTATATGAAAGACCCTGTTCACAAGCATCTCTGTATTCGCAATGAATGGGGACCAAATCAGGGTCCTTGGCCATACACCATTTTCCAGCGTGGTTTTGACTTGGTGATGGGGGAGCAGCCATCAGATCGCATCTTCAGGTTCACATACACTCTGGGAGAAGGAATGTGGCTGCCGCTGAGCAAAAGCTTTGTCATTCCACCGGCTGAGCTGGCCATCAACCCCTCTGCCAAGTGTAAGACAGATATGACTGTCATGGAAGACGCTGTAGACGTTAGAGAGGAGTTGATGATTTCCTCATCGTTTGACAGTCTGGAGGTTCTGCTGGACTCCTTTGGCCCGGTGCGAGACTGCTCAAAGGACAATGGCGGGTGCAGCCGTAATTTCCGCTGCATATCTGACCGGAAGTTGGACTCCACCGGTTGTGTGTGCCCTCCTGGTCTGAGCCCAATGAAGGATGGTACTGGTTGCTATGACCACCACATTGGCATCGACTGCTCTGATGGATTTAATGGTGGCTGTGAGCAGCTGTGTCTTCAGCAACTAGCTCCCCTTGAGGAAGACCCTACCCTTTACAATATCCAGATGTTCTGCGgCTGCATTGAGGATTATAAGCGTGGGGCGGATGGCCGCACATGTTTGCCTCTGTCTGAATCCTGCACTGAAGGAGTGGACTGTGGCGAGACAGCTGGCACTCCAGCCAATCAAACCATGTTTGGAGATGTCTTCTATGGCTATGACAACCGCACCAAGGAGATCACCACAGGCCAGATCCTTAAGGCTACCTTCAGGCAGAAGAACTTTGCCCGTGGCATAGAACAGCAGCTTCCGGATGGCATGGTGGTGGCGTCAGTACCAAATGAGGCACAGTGCCGCGAGGAGCTTTCTGATCCAGTTCCTGATCCTGAGTATCTGACTGgGATGGTGAACTACAGTGAAGTTTCTGGATATCCTTTAGTGCAGCACTGGAAGCTTCGTTCCATTTTGTATCATGTCAGGCTTAACCAGTGGACCCTCTCTCAAGCCTTCAGTTCAGCGATCCATTCTTTGGATGGTGCCACACTGCGCAGTGACTTCGTGTCCATTCTGAAGGAGTTTGGGAATCATTTTGTCCAGGAGGCAGTGTACGGCTTTGAGGAGTCCTGCACCATCTGGTACCCCAATAAGCAGGTGCAGCGGCAGCTGTGGCTCGAGTATCAGGACATCAGCAAAGGTAATTCTCCATCTGATGAGTCAGAAGAGCGGGATAAAGAGGCACGCGCTCTCACCTATCCAGCCTATATAGCCAGCCTGCTGGACTCGGGGGCCAAGCGTTTGACAGCAGGTGTGCGCATGGACTGCAGCAGCCAAGGCCAGTGTCCACTCTCATGCCACCTGTGCCACATGAGCCCTGGGACACCAAGGCCCACAGAGCCTGTGCTACTGCAAGTCACCAAGGCAGCACCAATCTATGAGCTTGTCAACAACAATGAAACctaccagGCTCTGCAGGAAGCTATGATGAGCATGTTGTGGTGTTCAGGGAAAGGCGACGTCATTGATGACTGGTGTCGCTGTGACTCCAGTGCCTTTGGTGCTGATGGACTGCCAACGTGTGCCCCACTTTCTCAGCCAATGCTCAAGCTGTCCCACTCATATGAACCCAGCAGCTCATTGGTTATTTTGGAATGGAATCATGCAGAACCACCAATTGGTGTGCGCATTGTTGATTATCTCATCAGCCAGGAGAAAATCACTGAGAGGACTGACCACACAAAAGTTGAAACAGAGACCATGCTGAGCTTTGTGGACGACATTCTGTCTGGGGCCAAATCTCCATGTGTGATGCTGGGTGAAATCCCAGATCCACTCACTTCTATCTCCATGATCATACGCTGCCTGGAGCCTGACACCACCTACATgttCAGACTTTGGGCCGTAGACAACACAGGAAGGCGCTCCAGCCCCAGTGAGGTCACCATCAAAACTCCCTGTCCTGCAGTGGACGATGTGAAAGCACAAGAAATAGCAGACAAAATTTACAACCTGTTCAATGGCTACACAAGCGGGAAGGAGCAGCAGACAGCCTACAACATGTTGATGGATTTGGGCTCACCCACGCTGCACCGTGTCCTCTACCACTACAACCAGCGCTATGAAAGCTTTGGGGAGTTCACTTGGCGCTGTGAGGATGAGCTCGGGCCCAGGAAAGCAGGCCTGATTCTGTCGCAGCTTGATGACCTCAGCGGCTGGTGTCGAGGACTTCTTCAAGAGCCCAAAATTGGCCTACGCCGAGCGTCACTCAAATTCCTGGCATGCCGTTACACAGACACCAAGGCATTCGGCCTCAGCTGGATGGAGCTTGGCCAAGGGCTGCACAAATCTTGTGATGAACAAATGCTGCCCGTGATGTACAATGACTACGGAGAACCTAAAGAAATTTgaacagaaaaggaaaggaacGACCATAGTCTGTTTCTTTAAGGCTCCTCATAAGGAAAAAAGTTTCTAAAGTTGTACAGCAAATGTTCCTTCTATGTCAGTTAAATTTACCAGTTTGTTAGTCATTGCTTGAGCAATTACTCCAACTACTTAAGTTCAAGCCAGTGCCGTGACCGATTTCATTCCCTATTCACTAAAAAGTACACAAGTTTGTGTGCAGCCATTTTGTAATGTTATCCAAATTCTCATTGGACAAATTATATTCCCTGGATAGCAGACTATAgtattacccagaatgcaccgTAAATCCAGTGTACAACCAATGCACCTTAAATACCATAAGGCATAGGGTTTCTTTTAACTTTGTATGCAAACATGGTTGTTTAAGGACCACTAAAGCCAACAGGTACTTCTTACTGgtgtatttattacagaaaattacttttaatacttGTGTTTTTGTGGATTTAGGTTGCTAAGTAATTTGTAACATTTGAATTGTTTCTGTAATGGAGAGTCAAGGTGATGTGTTTCTGGAACACAAGTAAGTGTTAGCTGAATTCAGTTCGCTGTCTGTTTGCTTTCTATACAGTACTCTATATAGAACGATCTATAAACAGTGACTGTGTGAGCGAAGGACTGATTTCAGACACAGTGCTGGGGCTTTTGTTGTGttgtactggagctacaaggcaaatGTATTCAACTGgaagtaaataaaagtaaataacagCAATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83637 lncRNA upstream 271998 24997916 ~ 24998225 (+) True G70520
TU83566 lncRNA upstream 420736 24839247 ~ 24849487 (+) True LOC113540553
XR_003404038.2 lncRNA upstream 423502 24839221 ~ 24846721 (+) False LOC113540553
TU83567 lncRNA upstream 423502 24839247 ~ 24846721 (+) False LOC113540553
TU83289 lncRNA upstream 520310 24681981 ~ 24749913 (+) True G70204
TU83828 lncRNA downstream 3998 25556837 ~ 25557761 (+) True G70695
TU83897 lncRNA downstream 5588 25558427 ~ 25561346 (+) True G70763
TU83912 lncRNA downstream 32487 25585326 ~ 25585534 (+) True G70778
TU83914 lncRNA downstream 33414 25586253 ~ 25586458 (+) True G70780
TU83916 lncRNA downstream 37128 25589967 ~ 25590187 (+) True G70782
XM_026937138.2 mRNA upstream 222906 25021613 ~ 25047317 (+) True dars2
XM_026937276.2 mRNA upstream 256917 24994877 ~ 25013306 (+) True klhl20
XM_026935923.2 mRNA upstream 399059 24859026 ~ 24871164 (+) True kif2c
XM_026935924.2 mRNA upstream 399059 24859027 ~ 24871164 (+) False kif2c
XM_026936109.2 mRNA upstream 462819 24792295 ~ 24807404 (+) True kiss1ra
XM_026936709.2 mRNA downstream 90563 25643402 ~ 25664410 (+) True cop1
XM_026936708.2 mRNA downstream 90563 25643402 ~ 25664372 (+) False cop1
XM_026936640.2 mRNA downstream 154988 25707827 ~ 25881110 (+) True tnr
XM_034303945.1 mRNA downstream 154988 25707827 ~ 25881110 (+) False tnr
XM_034303944.1 mRNA downstream 192684 25745523 ~ 25881110 (+) False tnr
XR_003403979.2 other upstream 398960 24859026 ~ 24871263 (+) False kif2c
TU83028 other upstream 1160334 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 1949880 23318504 ~ 23320343 (+) True G69509
XR_004578016.1 other upstream 3507922 21756781 ~ 21762301 (+) False LOC113540377
XR_003404013.2 other downstream 154988 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 345296 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 675925 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 735451 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other downstream 735451 26288290 ~ 26292784 (+) False zgc:66427

Expression Profile