RNA id: XM_026936675.2


Basic Information

Item Value
RNA id XM_026936675.2
length 4246
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC113540276
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13724314 ~ 13738910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCCTGTAGCTGGATGACGCAGAGGTCACGTGTTGTTTGTGCCGCGGTCCATAGAGATGTGTGTACAGAGGGAGTGAGAAGCAGATTGGCAGCGCCGCTAGGATCTACCGATAATAGAAACGGGTAATGTGGTCATGTTGCAGTGGCTTGGCTTGAATTCTTGTCGCGTTGGCTGCGTTTTCCTGAGGCGGCTCAGAGGAGCGCATCATCGGGAGGAATAAATTGCGCCGCTGCTGGAGGAGAACACGACCCCCCTCCCTCCCCAAACAAGAATGGGGTCTCATAGCGCAACACTAAGGCGAAGATAAACTTGACCCAGCGTTTACTAACCAAATGGCGAATCTTGCGAATTATCCAGAAGGCAACGCCGCCTTGCTGATGCTGGAAGTGCAGCAGAGGACTGTCGGAGCTAAAGCAGATTCAAACGGCGGCCCCTCCGGCGGGGATCCCCCTTCCTCCCCGCTGCACGGCGGCGGCGCTGCTCGCTTCCATCAACACCAGCAGGCTGCGCCGCCAAGCGCACATCATCAACCGCAggaccaccaccaccaccaccaacaacagcaacaacaacattttgATCACGAAAACTATCAACAGTCTCCAGCGCGAAAAAGCCTCTTGTCTTCTCTTAAACCAGCACATGAGGACTCCGCTGCTTCTGCTGCTACGAGCCACACACAGGCTACCTCATCTGCCACTGCCATGGCTGTTAACACCGGCGCCGCTGCTGCAGACGGGCTGGACGACATTAGGAAGTGCGGCTAcctgagaaaacagaaacacGGCCATAAGAGGTTTTTCGTCTTACGCTCGGCGAGCCGTTCAGGGCCGAGCCGACTGGAGTACTATGACAGTGAAAAGAAGTTCCGTAGTAGCCTTCGCTCTGCCGCCgctgccgccgccgccgccgccgccgcctcGTCTACCGGTGCTGCTGCAGCGAGCGCTTCTCCTCCCAAACGCGTGATTTATCTCTACCAGTGTTTCACTGTAAACAAAAGGGCGGATTCAAAGAACAAACACCTCATAGCTCTCTATACCAAGGACGAATACTTTGCGATTGTGGCCGAAAATGAGCAAGAGCAAGAAGACTGGTACTTGGCGCTCAGCGACCTGATGAGTGAAGGCAAAAAAGGCCACACGGAGGCCGACGAGCTCGACGACGGCTACGGTACAGTAACGCCAGGCACCGTCTTCAAAGAGGTCTGGCAGGTAAACGTGAAACCCAAGGGCCTAGGGCAGACTAAGAATCTCACAGGTGTGTACAGACTGTGCCTCTCTTCTAAAACCATCCACCTAGTAAAACTGAACTCTGAGACCCCATGTGTAAACTTGCAGCTGATGAACATCAGACGCTGTGGCCACTCTGAGAGCTTCTTCTTTATAGAGGTTGGGCGCTCCTCTTCAATCGGTCCTGGAGAGTTATGGATGCAGGTGGATGATTCTGTGGTGGCTCAGAGTATGCATGAGACCATTTTAGACACCATGAAGGCTCTAAAGGCCTACGCCGAGTTCAGGCCGAGGAGTAAAAGTCAGTCGTCTGGCTCTAACCCTATGGCTTTCATGACCACACGTCGCCACCTGGGAAACCTCCCACCCAGCCAGACAGGTCTGCAGAGGCGGTCTCGGGCTGAGTCTGTGGTTGGCACCCCACCTAGCAGTAAGAGCAGTGGTGCAAGTGGATACAGGTTTCGCACCTCCAGTGAAGGTGAGGGCACCATGAACCGCCCATTTCGATCAGTCACAGGCAGCCTGATCCACCTCAATACAGCCCGTGCCAACTTGGGTAGACAGGAGAGCAGTGGTGGAATGGGGAGCCGATACGTACGAGCCCCGCCAGGTGCCACCTACCATGCACGGTCTGCCTCACTTCCAGTGTCTCACTTCCCCTCCACCACCAGTCCCGTCAGTATGTCCAGTAGCAGCGGCCATGGTTCAGTCACTGATACCAACACCCGGCCTTCCAGCGCTTCCGTCTGCGGTTCGCCCAGTGATGGAGGCTTCAACTCCTCTGATGAATACGGCTCCAGCCCCGGAGACTTCCGCTACTTCAGAGTACGCAGCAACACACCTGACTCATTGAGCAACACGCCACCCATCCGGGAGGAGCACTGTCTGAGTGACTACATGGCTATGGGCTGGAGCCGAGACATGTTCACTGGGAGTGCCGGGGAGGTTTCCCGTGACGAAACTGCTGATGAAGATTCACGGTCATTTAGGAGGCGCACTCCTTCCTTTTCCAGACAGGTGGGAGCCGGCAGTGCAGGCGGAGTAGCTGTTTACCAGAAGATGACTCAGACCAACTTCTCGCTGGACGAGGCTGTAGCTGATGGAAGCTTTCTGGGCAGCAATAGCCAGGTTGCCTCCATCTCTTCATCACTTCGTTCTGATTACAGCTCCAGCTCTGAACACAGCCAGGACCACCCCCCTGCACTGCGGGCTGCTGATTCTTTCAAAGACGATGGATACATGCCCATGATGGCTGGTGTGGTACCCTCTGCACGAGACACAGATTACATGCCTATGCAACCCAGTCCTCTTGTCTGTGCCTCTCCACAAATCCAGAGCATGGCCTCTCCTCCCTCTCAGCACATGGACTCACAAGGCTACATGATGATGCTCCCAGGTGGGAATGGGGGTGCAGACCCCCCAGTGCCAGGCAGCCCCCACATTAGCTGCAGGGGCCTTAGTCAGAGAGGTAATGAGCGTCCTGAAAATGGAGAATACATGGATATGTCTCAGAGTAGGCCCATGGCAGGCAGGCGAAAATTCTCTAATGACAGTTACTACACATTGACTGCTCCTGAGATACCCAAATCCCACAGTTCATATTTCTCCCTACCACGTTCATACAAAACCCCAGCAAAACATCGGCGTGAGCATGATGAATACGTTCCCATGAGTTCACCTGCCAAACCTGTCTACATCTCTCCGAGTACCACACCTGAGCATAATGGCTGTAGCGATATGGATTGCCATTCTTCACGTCCAAATCTCCTCCCCCTTAGCCGACGCAGTTTCCATGGGTCTTTACAGGCGAGTGAGACGGTGGAATGTCCCTCCAGTCCTGGAGAGTACATTAACATTGAGTTTGGTGACCAGGCCTCATACTCGCTCACTACAGAGGACACTCTCACCAGCCAAAGCACCCACCGGCAGGACCGGCACTCTCCCCTTCCCCAGGACTACATGAGTGTGGAAGTGGATGGCCTTCCACCCAAAAGTCAGTCTTCACGTTCATCACTGGTGGCCCCTTGGAACCTCCCTACTTACATTCGTACCAGTGGTGGTGGAGTCACTTTGGGACAGTCGGATGACTACACAGAGATGAGCAGTGGTCGGCGTGAGGAGCGTAAAAGCCCCACAACTATGTTGCAACACCTTAGCATTTGTGAGCAGAGGTATTCAAGCTCTAGCGCACCCGTTGAGCCAAAGGTCATACGTGCAGACCCCCAGGGCAGGCGGAGACACAGCTCTGAGACTTTCATCACATCTACGGAAGTGACAGGAGCGACTGGCCTGGACAACAGCGCCTCAGTGCCTAGCACTGTTCCTCAGGTGGGGGATAACAAGTGGCAGAGCTCATCATCCTTCGACAGCACATGGATGTGTGTGGAGAACAAAGCAGCAGGTGACAAAGAGGAAGCACCGGGCCTCTCCTCAGACCGAGCTGAAGCAAGTGCCTCTTCTGTGAGAACCAGAAGGACTCTATCTGTGGAACACCAAAATGGCCTCAACTACATTGCCCTGGATCTGAGAGAGGACCAAGGGACTGAGAGTGCCAGCACTGAACCCCAAATGCCGGCCTCTGGCGTGCTCCTCCCAGAAAATGGGGAATACGCCAGCATAGATTTCACTAAATCTGAGCGGATCACTGCGGCTTCTAAAGAGTAAAGTTGAGCTACGTGGCTGCTTTTTGGAGAATGGAGGAGCCACCGAGCCACTTCCGGCCCGTCACACACCCTGCAGAAACGACCCCAGGGACCTCCACTTTGTTTTCTCGTCATGTCCTCGCTTTAAATTTCGCCTCTTTTAAGAGCGCATTATCTTCTGGGTTGGTGTTGTTTGAAGTCAGCGCTTTAATATTTTGAtcgttttttaatgttttactttttaattgtGCATAAAAGGGTTTTGCTCACTGACATGCAGAGATCCCAATGCTGTTGTCAGCAGTCTCATCCACACAGGTACACAGTGTTTACTGATTAAACATTACTGATTAAAATGCGGTCGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75791 lncRNA upstream 151481 13570002 ~ 13572833 (+) True G63976
TU75739 lncRNA upstream 219595 13504460 ~ 13504719 (+) True G63936
TU75682 lncRNA upstream 256588 13459362 ~ 13467726 (+) True G63898
TU75685 lncRNA upstream 306873 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 336360 13387598 ~ 13387954 (+) True G63889
TU75843 lncRNA downstream 16634 13755544 ~ 13759751 (+) True G64025
TU75876 lncRNA downstream 164531 13903441 ~ 13909459 (+) True G64049
TU75933 lncRNA downstream 273188 14012098 ~ 14012315 (+) True G64102
TU75934 lncRNA downstream 274309 14013219 ~ 14013418 (+) True G64103
TU75936 lncRNA downstream 278376 14017286 ~ 14017669 (+) True G64105
XM_034303628.1 mRNA upstream 4860 13705417 ~ 13719454 (+) True gc2
XM_034303627.1 mRNA upstream 4860 13705576 ~ 13719454 (+) False gc2
XM_034303629.1 mRNA upstream 4860 13705576 ~ 13719454 (+) False gc2
XM_026936929.2 mRNA upstream 6419 13705576 ~ 13717895 (+) False gc2
XM_026936262.2 mRNA upstream 24624 13692777 ~ 13699690 (+) True rasl11a
XM_026936438.2 mRNA downstream 59270 13798180 ~ 13880674 (+) False col4a6
XM_026936439.2 mRNA downstream 59270 13798180 ~ 13880674 (+) False col4a6
XM_026936440.2 mRNA downstream 59270 13798180 ~ 13880674 (+) False col4a6
XM_026936441.2 mRNA downstream 59270 13798180 ~ 13880674 (+) False col4a6
XM_034303948.1 mRNA downstream 59419 13798329 ~ 13880674 (+) True col4a6
XR_004577999.1 other upstream 4860 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 162048 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 249277 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 305618 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1429191 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578085.1 other downstream 516834 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 893120 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2284285 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2571303 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2629046 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile