RNA id: XM_026936697.2


Basic Information

Item Value
RNA id XM_026936697.2
length 3762
RNA type mRNA
GC content 0.46
exon number 15
gene id rap1gds1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18049289 ~ 18082430 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCGGCGTCGGTGCTTTGAAAGCGGTCTGCTCCGGCAGGAGGAAGTGCATAGTACGGTGTGTTATTTTCATGTCCGTGTTGGTTAATTTATAcgaataaaaatacataaccGCCGACATCAGACTAGCGGGTGCTGGGAATTTTCCGCACTGTCCGGAGAGCTTTGAGCGTTTAAATATAAAGCAGAGTGGATAGTGTGTGTAGCTGGAGCAGCGTGGGTTAAGGTGGGCCTTGCCCGGATATCTGCCAagcaaactgaaaaataaataaataaataataataattaaaaaaagcattagcGAAGCTTCTCCTGTCACCTGCCTGCTAGGAGTTGAAAATATAAATTGGCACGCATTTATATTGGAGCTTTGAACCCAAACAAGAGGACTAAAACACCCTCATGCAAATGGCAGATAACCTGAGCGAAGCCCTGAAGACGCTGAAGCTCTCATCAGCGGACAGTGCATCAGACAGTGTGGAGAGTTGCCTGGACTGCCTGCTCAAAGCTTTGTCCCATAACAATGTGGAAGCCAGTGGAAAAATCCAGGAGATGGGTGTTCTTTCCATGATGCCTTCTTTATTGGCCACACAGAACTCCTGCACACCCAAAGTAGCCAACATCATAGCGGAGGTGGCCAAAAACGAGTTCATGCGGAGTCCCTGTGTGGAGGCAGGCCTCATCCCCCCACTGGTTCAGCTGCTCAACTGCAAGGACCAGGAGGTGCTGCTTCAGACGGGTCGAGCCCTGGGCAACATCTGCTACGACAGCCATGAGGGCAGAAGTGCAGTTCACGAAGCGGGCGCTGCTCAGATAGTAGCAGAGCACATTAAGGCTCTGGCCCATAACACTGACCCGGCCACCGGGAAGCTCTTGACTGTCTTTTGTGGCATGCTGATGAACTATAGCAATGATAATGACACATTGCAGGCCCAGCTGATTAGCATGGGAGTGATACCCACCCTGGTGAAGCTTCTGGGAGTCCATGCGCATAACACAGCTCTCACAGAAATGTGCCTCATTGCCTTTGGAAACCTGGCAGAACTGGAATCAAGTAAGGAGCAGTTTGCAGCTACAAATATTGCTGAGGAGCTAGTGAGACTTTTCCGGAAGCAAGCGGAACATGAAAAGAAGGAGATGATCTTCGAGGTGCTGGCTCCTCTGGCTGAGAATGatgTAATAAAGCTGCAGCTGGTCGAGGCAGGTCTGGTCGAGTGTCTGTTGGACGTTGTGGCTCAGACggtggacagtgacagagaggaAGACCTGGCTCAACTCAAAACAGCGTCTGACCTcatggtgctgctgctgctgggagatGAATCCATGCAAAAGTTGTTTGAGGGGGGTAAAGGTAGCGTGTTCCAGAGGGTTCTCTCTTGGGTTCCGTCCAACAACCATCAGCTCCAGCTAGCTGGGGCTCTGGCTATTGCTAACTTTGCCCGCAATGATGGGAACTGCATCCACATGGTAGACACAGGAATTGTGCAGATGCTGTTGGACCTGCTGGACAGACATGTTGAGGAGGGGAATGTTACAGTGCAGCACGCAGCCCTCAGCGCCCTGAGGAACCTGGCAATCCCAGTGGTGAACAAGTCTAAGATGCTTTCAGCTGGAGTGTCTGACGTGGTGCTGAAGTTTCTTCAATCAGAAATGCCACCAGTTCAGTTCAAGCTGCTGGGAACGTTAAGAATGCTTATTGATACACAAGCGGATGCTGCCGAACAGTTGGGAACAAACCGTAAGCTGGTGGAGAGGCTGGTAGAATGGTGTGAGGCGAAAGACCACGCAGGGGTGATGGGAGAGTCCAACCGCCTGCTCTCGGCACTGATCCGACACAGCAAGTCAAAGGAAGTGGTACGGACGGTCATTCAGTGTGGGGGTGTAAAGCACTTGGTGACCATGGCAACGAGCGAGCACATGATCATGCAGAACGAAGCgctggtggctttggggctcaTAGCAGCACTGGATTTGGATTCAGCTGAGAAGGACTTTGTTGGAGCCACTTTGGTGCAGGTCCTACATAAGCTGCTGACAGAGGAGAAGAGCGCTCCTGAGATCAAATACAACTCCATGATCCTCATCTGCTCCGTCATGGGCTCAGAACCTCTACATAAAGAAGTACAGAGCCTGGCCTTCATTGACGTGGTGTCCAAACTACGCTCCCATGAGAACAAAACGGTGGCCCATCAGGCCTCGCTAACAGAACAGAGGCTAACTGCGCAGAGCTAAAAGACTCtttaaacacaccacacacactccatccattctctgcCTGCCAAACCTTCCTATACACACTCAACCTCCTATGACTCCCACCGTCTCCCTCTGTCATGTGCCAAGGTATCCAGTCCCACTCAGCCTCCCTGCTATAAAGTCCCCGCTTCTCACCCAGCTCGTTTCACGCATGCGTTCAACACTTCGTAGGACATTGTAGACTGCCTTCTGCAATAGGTTGTGCGAGTGAGATAGGGAGCGTGCAACACTTATAAAAAGACCATAGCTGTGATAAACAAAGCATTCACATCTCATTGAGGAAGACGAAACctgcaaaaaataacaaaaaagtgaCTAGACAATAACTACATGAGGGCTAGAGGAGAAACTAGCGCAGCCATATGTTCATGCCGTGTAAACCCCACGTGTTCTGTGTAGCTTGAATACCTGCTGATTTTGacacctgcatgtttttttaagtagtCTAATTTAATGGTGTATCTGTGTTCAGCTAGCCAGACCTCGCTCTTTACGATACACTCTGCCCCTTTAATATATACGAATACCTGCCTTTGACATGTTCGAGTAGAGATCAaatgtgtttgtactgtacatGGGATGACAGGACCACAGAGAACGCTTTACATTTTAACCCCCCATGGTCCTAGTGCCAGTCATGTTCATACCTATGAAGTCACTTTACTGGAAAGAGCTAATTCCATTTCACTAGTCTGTTGAATTTTCAAACAGATTACTGTTGTCATATGGATATTATGAACAAATAATAGCATCTTGTTAACAATTAATAAGTATTTCTATTTGCTGCCCTTTGTCGAAGAGTTTATGAATGTTGTCTAGGCTGCATACACTTagtcaggatagtgaaaaaagATGTTGCTTGTTAAATGACAGTACAATGTTAATGTTATGCTATATAATCTGTTGGGATATAGCATGCTGTTTAACGTGACTGCCATTACACCAGGTATAACAACAGCTCAAATGGACATGGATCATTACAAggccataaataaataatgcaatcAAGTTTCAAGAATGGGCTTAGACAAGTCAGTGTATATGAGTGTTTTATGTTCTGAGGTGGTTGGAAATACTGCCAACAGTTCCACAATCCATGACCCCAGCATTGAATAACAACCTATTTTGAGTGTCTTAGATAATGTGCTCTCTTGAGTGCTCTCTATCAAAGGTGTACATTTGATACTGtggtacatttttatttcctgaGCTGGATTTTGCATGTGTACAGGTTTGTCTTTTACCAACCCACTGAGTATCACAAAACATGCATTTCCACTGCATGTTGGGATACCGTACCACTCTGATGTGGCCACTTTATGTTCGataaatgttatgttatttaTCAGATTTGTAACCTTAAGGAACCACTCAGCAATCCAATATATCTATATTAACTGCATTACAGATATTTAAACTCGACTAGTTGTTGTAAATGTCACTGATTAATTGTACATTTGGGAGAtagaaaatgattattaaagaCAATTGCTGGCGATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78493 lncRNA upstream 57042 17990435 ~ 17992247 (+) True G66237
TU78438 lncRNA upstream 73930 17973998 ~ 17975359 (+) True G66186
TU78405 lncRNA upstream 130192 17904611 ~ 17919097 (+) True G66169
TU78403 lncRNA upstream 130192 17911594 ~ 17919097 (+) False G66169
TU78468 lncRNA upstream 172215 17873399 ~ 17877074 (+) True G66214
TU78533 lncRNA downstream 9158 18091588 ~ 18096583 (+) True G66263
TU78778 lncRNA downstream 29255 18111685 ~ 18111915 (+) True G66426
TU78810 lncRNA downstream 94804 18177234 ~ 18177642 (+) True G66452
TU79006 lncRNA downstream 299526 18381956 ~ 18382162 (+) True G66637
TU79026 lncRNA downstream 348132 18430562 ~ 18431136 (+) True G66654
XM_026936730.2 mRNA upstream 21238 18020211 ~ 18028051 (+) False spata6l
XM_026936729.2 mRNA upstream 21238 18020212 ~ 18028051 (+) False spata6l
XM_026936727.2 mRNA upstream 21238 18020212 ~ 18028051 (+) False spata6l
XM_026936731.2 mRNA upstream 21238 18020806 ~ 18028051 (+) False spata6l
XM_026936732.2 mRNA upstream 21238 18020806 ~ 18028051 (+) False spata6l
XM_034303317.1 mRNA downstream 31003 18113433 ~ 18143631 (+) False frem1a
XM_026935846.2 mRNA downstream 31014 18113444 ~ 18143631 (+) True frem1a
XM_034303316.1 mRNA downstream 31043 18113473 ~ 18143631 (+) False frem1a
XM_034304071.1 mRNA downstream 139194 18221624 ~ 18243797 (+) True sec24d
XM_026936118.2 mRNA downstream 343928 18426358 ~ 18430359 (+) True gba3
XR_003403977.2 other upstream 38327 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 284755 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 429210 17609704 ~ 17620079 (+) True LOC113539940
XR_003404112.1 other upstream 1287414 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 1287642 16761572 ~ 16761647 (+) True LOC113540744
XR_004577948.1 other downstream 31014 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 114882 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 774026 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1745881 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 1746389 19828819 ~ 19828890 (+) True trnah-gug_5

Expression Profile