RNA id: XM_026936701.2


Basic Information

Item Value
RNA id XM_026936701.2
length 4010
RNA type mRNA
GC content 0.44
exon number 14
gene id plxdc2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22045016 ~ 22163581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccTTCTGCATCCGAGCAGCAGTCAGTCGTGTGCGCGAGGACTGTTATTTGATGACACTACTGTATTTAAGTGTGTCTCGTTTCTCCGTTTTCAGGACCCGTGAACtcagttctcacacacacacacacacacacacacacacagacagacagacaagcgCGCGCACATCCCGATCCACTTGAGCGGTGTGAGTTGTGGGAGCAGCGCGTGGCGGAGAGACGAGAGCGCGAGGAGGAGCTGACAGTAACACCGCGGCTCCAGTGAAACGCCTGCTTCAGTCCTGCCTGTGCTCGTGTGCAGAGGAGCAGAGGAGCAGAGCACATCACATCAGCCGCACATCTTCTCGTCATGGCGGGGGCGAAGGCGCTCGACCTCATGCTTGGAGTTGTGTTACTTCTGCATGCTCTTGGAAGTCTGTTCCAAATCACCCGCGGGGAATTAACCACAGAGGGAGTTTCCTATTCTGTGCTTCAGGGGCCGGGGCAAGACAATGACATCACAGTGGAAGTACTCAGGAAGAGACGGTGGCTGTCTGAGCCAAGAATGACCAGCAACAAAGCCAGTCAGGAGACTTCAGAGGCGGAGTCACAGGATGTACCTGGACCACTGGCAGATACTGATGCAGATAACAGCTCCCAGATAACCgagGACACAGATCACAACTATTACACATCAAAGACCTACGGCCCTAACGATCCCATGAGCAAAGAATTATGGGTGAACATTGATCAGATGGACAAGGAGAAAGTGAAGATCCATGGAAtcctgtccaacacacacagacaagcagcaCGGGTCAACCTGTCGTTTGATTTCCCCTTTTATGGACATTTTCTCAGGGAGATCACTGTGGCAACTGGCGGGTTCATTTACACAGGAGATGTGGTACACAGAATGCTGACAGCCACACAGTACATCGCCCCCCTCATGGCGAACTTCGACCCCAGTCTGTCCCGAAACTCGactgtcatttattttgacAATGgCACTGCACTGGTGGTTCAGTGGGATCACGTTCACCTCCAGGACTCGTTTAATCTGGGCAGCTTCACATTTCAGGCCACACTACACAGTGATGGCAGAATTATCTTCGCCTACAAGGAGGTTCCTATTCAGATCGGACAGATCAGCTCTGTTAACCATCCAGTGAAGGTGGGCCTCTCTGACGCCTTCGTGGTGGTTCACAGGATTCAACAAATTCCTAatgttcGGAGGAAGACCATCTATGAGTATCACCGTGTGGAGTTACTCAAGACCAAAATCACAAACAGCACAGCTGTGGAAATGATGCCACTCCCTACCTGTCTGCAGTTTAGAAGCTGTTCTGCCTGCATCGCTGCCGAGATCAACTTCAACTGCAGCTGGTGTCACCGACTTAACAGATGCTCTAGTGGTTTTGACCGCCATCGGCAGGACTGGGTAGACAACAGCTGCCcagatgagACAAAGGACAACATGTGCGACATCATCAAAACCACTCAGTTTGAATCATCTACCACTGCATCAGTGACCAAGACATCCACGAGGAACAGAGCCATTACAGAGACTGATTCCACCCAGTCTACATCACATCCACCCACCAGCATCCCTACAGAAGATGACACCAAGATTGCCCTTCATCTCAAAGACAATAGAGCGGCAGCGGCACACAGCATGGCGGAGAGGGAATCAACCAGCAACAAACACAACCTTCACACAGGCCTGATCCTGGCCATGCTCATGCTGATGTTGGTCATAGTGGCTGTGGTGCTGGTGACTGTTTACATCTACCACCACCCCAGCTCAGCCGCCAGCCTCTTCTTCAtcgagAGACGACCAAGCCGGTGGCCTGCCATGAAGTTCCGCCGTGGTTCAGGGTATCCTGCGTACGCCGAGGTGGAGCCTGTCGGCCAGGAGAAAGAGGGCTTCATCGAGGCTGAGCAGTGCTGAGgtcctgacctttgaccttgtgCCCCCATACACTGCCCTGCTCCCTCTTCATACACACTCATCCATGTAAGAACTGAAATGTCCCGCTTTCATCAACCGTCCAAATAGGAAACAACAGTGTGGATATAAAATCATTCCTGCAAGTAAGAGAAGTATCTGATGGCTGATGATTAGTAGCACAGAATCAGATTCCTACAGCTTGATGATCAAATGAGCCATGAGAGAACTGACAAAGGTCTGAATCTGGATCATCTCTAAACTGCACGCTGAGCGCTAGACCTGATCTGGAACCAGCACCCAAAGCCTCGATCCCACTGGAGCAGATTTGGATTCAAATTCAATGCATCTTTTTCCTTTCACCACAGAGGAATTTCTTTTtgaaaactctttaaaaatCAGAGCTGTGCATCTCCGGTTTATGGTTTAGGAGAATTTATTTAGGTCTTTATATATCTTTGCAACGGGTTTTAGGGTTTTTCTTTTGACCATATTGctttgtttcagttttaatttgatGTTTTGGAGGAATTTAGTGCAGATTGTTGCTTGAAATGCAGTTATACTCATATAAAATCATtcatgctttcattttctgctACAATTGGGAAACGTTTGCATGCTGTATCCAACAGTGGTGCTCAACTTTTCCATGCCTATGACTCATACTTAAATTTTTTGcacaaatcttttttaaatgcacatatgtttttggtttttttcaatttgtttggattttattcTTGGGTTACTAATGCAAAGTTACAAGACAGGCGCTTGTGGATCTTTGTCTCCTGTATGTGTCAAAATGGAGGTGGGACAGTGTTTGGATGAATTATCTTGTTtgttgatttatatttttgattggTTTCAAatggttttgtcttttttcctgtGACACACTGAttagagactccttccttccTACTGCAAATGTTCATTTTGCTAGTTAGAATTGATTCCTATTCAATTGCTTCAACACGGTACATGCAATAGACATGCCAGTGGACGTGACCACATAAATGAGAATATATATTTGATATCTGTCCATATGTAATTACttatataaatctataagaataacagtgtttaaatgttatCAGCTGTGTTCTCATGATGACATGAATGGAGTgggtttttttaatggaatgaAGACTATAAAATCCTTCAGGTTCATCCTGCGATTCATGCATTCTCCATATAGAATCAGAGAAATAGATTTCTATTAATGTAGCATAGACACAAATAAATACTAAACCctagtctttctttctttcagttaaTTCAATACGAGTGTGTTATTGCCGTTAAACTTTTAAGACTTGGTTCTCACTCTACAGTCGTATCAGTGGCTATAATCACAGCACTTCTTAATTTTTCTTGTAGCAAGTGTTTTACTGTTTTCAAAACCAAAGACCCATATCACTGCATCACAACTACTGTTCCTTATGTTCTTCCctctcattgtctctctttctttctctcacacacatacacacacatgcacacacacacacatgcacacagaggcACGGATTTAGACAAAAGGATAAGGCTTCTGAAACTACACAATAGACTCAGGTCCAGTTAGAAACATGATCGTGTGAATTACAGAGGAAACCAGAAGGACAAATAACAAAGATAACAATACATTACAGATGCAAAAATCCTCCATGGTTGCTCGTTTTACACAACCAATGCAGATGATAGTATATAAGAACCataataattaagtaaaaaatatttataagaatGCAGGAAAGACAACTAGGCCTTCTTTTAGTTTGTTGgggtttttgcttttgttttggtttaagtttttttttctgtatcacTGGACTCATTTGACGAATTTCATCCagcctgagagtgtgtgtgtgtgtgtgattcttaAAGTGAATGAATGTTTGACAGATGAGGAGAATGTTACATTTAACAGCAGGCTGTGCTCTCAAAGTCAGGATTTTTCACAATAACAGTCCTCTGAGAGCTGCTGGCCTAGTCGATGCTGTAACTCTGTGTGCTCCTCTATAACTACTGTCATTTTGATtgcattttaaatcaataaagttGTTTAAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81502 lncRNA upstream 127241 21914806 ~ 21917776 (+) True G68687
TU81415 lncRNA upstream 282735 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 282788 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 295698 21732946 ~ 21749319 (+) True G68621
TU81294 lncRNA upstream 557529 21486974 ~ 21487488 (+) True G68523
TU81775 lncRNA downstream 81007 22244588 ~ 22244825 (+) True G68947
TU81789 lncRNA downstream 219513 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 229258 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 363747 22527328 ~ 22527556 (+) True G68999
TU82061 lncRNA downstream 486362 22649943 ~ 22652447 (+) False LOC113540463
XM_026937183.2 mRNA upstream 9456 21974743 ~ 22035561 (+) True malrd1
XM_034304043.1 mRNA upstream 99429 21934492 ~ 21945588 (+) True arl8
XM_026936360.2 mRNA upstream 130785 21884260 ~ 21914232 (+) True cacnb2a
XM_034304011.1 mRNA downstream 6751 22170332 ~ 22184685 (+) True nfx1
XM_026936559.2 mRNA downstream 27105 22190686 ~ 22239624 (+) False smarcd3b
XM_026936557.2 mRNA downstream 46239 22209820 ~ 22239624 (+) True smarcd3b
XM_026936558.2 mRNA downstream 46239 22209820 ~ 22239624 (+) False smarcd3b
XM_034303733.1 mRNA downstream 46239 22209820 ~ 22239624 (+) False smarcd3b
XR_004578015.1 other upstream 282716 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 1154923 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1945214 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2695445 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3544246 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3734554 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile