RNA id: XM_026936709.2


Basic Information

Item Value
RNA id XM_026936709.2
length 3427
RNA type mRNA
GC content 0.43
exon number 20
gene id cop1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25643402 ~ 25664410 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGCGGTGGattgaaatgtggaaaaaaaaaaaaccttctgagTGTCAACAAATATCGTTGTAGTAACAAATGCTCGAGTTTTGTTGCGTCGTTCAAGTTcgttaagcttttaatgatagATCTCCTCTGAAcgtgttaaacaaacaaaagcgcTATTTGGTGGTAACAGCCAATGTGATAACTCTTAGCTCAGTCTTAGTGCGTTAACTGGCTAAAACATAaagcagctagctagcattatccGCCCGGATGCGGTGAAAGCGCCTGAGGAAGCTAACGGCAGCGCAGCTTTTTGCTACGGACGGGCCTCGAAAAGGAGTTCAGAGGCGTCTTGAAAGATGTCAGGCTGtcggcagcagcagcagcagcagcagcagcagtccgGTGGTGCTTTGGGATCTGTACCGGGAACGAGCTCTGGGAGCACGGCGACTGCTAACATTGCTAATAACGGGGGGAGCAGCGCTAATGCTAATGGCAATGGCATTTCTTTGCGAAGTCTCGGATCTGGGAGCGAGGCGCAGCTACTGGGTGCACAGAGACCCAGTTTATCCGGCGCCAACCACAGCAAGAAAAGACCTCTATATAACGGTCTTATTAATCCATATGAAGATAAgagtaatgattttgtgtgTCCCATATGTTTTGACATGATAGAGGAAGCTCATATGACTAAATGTGGTCACAGTTTCTGTTACAAATGTATACGGCGGAGTTTAGAGGACAGCAACAGGTGCCCGAAGTGTAATTACATTATTGACAATGTGGATCAGCTGTACCCCAACTTCTTAGTTAATGAGCTGATCCTCAAGCAGAAACAGAGATCCGAAGAGAAGCGACTAAAACGGGACCACCCTAATGGAACCAAATGGCAGTTTTTCCAAGATGTTCTTGGCACAGACCAGGAGCATCTGGATTTAGCAAATGTCAACTACATGTTGGAACTGCTGGTGCAGAAAAAGAAGCAGCTTGAAGCGGAATCGCAAGCAGCTCAGCGTCAAATCCTAATGGAGTTCTTGAAAGAAGCTAGGAGGAATAAGAGAGAGCAACTAGAGCAATTACAGAAAGAACTGAACTTTTTGGAAGAGGACATAAAGAGTGTTCAGGATATGAGTGGGCTGTACTCACCAGTTATTGATATGGACCCCAATTTGGACAGCACTGTTCCCCAGTTTGGAGATGCACACTCTCCTGCACCCAGtaGCATCATTGAACCCACAGAGTATATCCAGCCTCCTCAGTTTGGAGGAAGCTCACAGGGTAAAAGACAGACATCATACAATAGCACTCTGGCCTCTCGGAGAAAGAGGCTAACAGCACACTTTGAGGACTTAGAGCAGTGCTACTTTTCCAACAGAATGTCACGAATCACAGATGACAGCAGAACTGTTAACCAGCTGGATGACTTCATGGAGTGTCTCTCCAAATTCACACGTTACAACTCTGTACGCCCTCTGGCCACTCTGTCTTATGCAAGCGACCTCTACAATGGTTCTAGTATTGTTTCTAGCATTGAGTTTGACCGTGACTGTGATTATTTCGCCATTGCCGGTGTCACCAAGAAAATTAAAGTTTTTGAGTATGGAACAGTGATCCAGGATGCTGTGGACATTCATTATCCTGTCAACGAAATGACATGCAACTCCAAAATAAGCTGTATCAGCTGGAGTAGCTACCACAAGAACCTGTTGGCAAGCAGTGACTATGAGGGAACAGTGATTCTTTGGGATGGGTTTACGGGGCAGAGGTCAAAGGTTTATCAGGAGCATGAGAAGAGATGTTGGAGCGTTGATTTCAACCTTATGGATCCCAAACTTTTGGCATCAGGCTCAGATGATGCAAAAGTCAAGCTGTGGTCCACTAACCTGGATAACTCAGTTGCCAGCATTGAAGCCAAGGCCAATGTGTGCTGTGTCAAATTCAGCCCAACATCTAGGTATCACCTCGCATTTGGATGCGCAGACCACTGTGTCCACTACTATGATTTGCGGAACACTAAGCAACCCATCATGGTCTTCAAAGGTCACCGGAAGGCTGTGTCCTATGCCAAGTTCGTCAATGGAGAAGAGATTGTGTCTGCCTCCACGGACAGCCAGCTAAAGCTGTGGAATGTGAACAAGCCCCACTGCCTGCGCTCTTTCAAAGGCCACATTAATGAGAAAAACTTTGTAGGCCTGGCCTCCAATGGAGATTATGTAGCATGTGGAAGTGAGAACAACTCCCTATATCTGTATTATAAGGGGCTCTCCAAAACATTGCTGACCTTCAAGTTTGACACTGTGAAGAGCGTTCTGGACAAGGACAAGAAGGAAGACGACACTAACGAGTTTGTCAGTGCCGTATGTTGGCGGGCTTTACCAGACGGGGAGTCCAATGTGCTGATTGCAGCCAACAGTCAAGGAACAATCAAGGTACTTGAGCTAATTTGAAGGTCTACTAGAAACAATCATCACATCCTTTTGACAAACCAGTGGAATATTTCTAATGCAATGTGACTgaccacaaaagaaaaaacctcTGGATGCTGACACTGatgttttcacaaaaaaaaaaaagtgctccaGTTTCAGGACCGGTTGTGACCTCCAGGGAATAGATGTGGACAATTCTGGTGGAAAAGGAAATGGTGACTCTTCTTTTAAAAGCCTCATTTGGAGTAAAATGCTTAATTAAAGGCATTAATAAAGACTGAGCCTTCAAAGTAGAGGCAGAAGTTAGAGCTGTGTGAGTACAAAGCCAAAGCACAAGACCAGAACACAATGAAATGCTTTTTGTTGTACAAATAATCAATTGCCACATCATTATTTTGAGCCTGTAGTATCCATATATTCTTTTCATTTGATACAGTATCTGTCTATAAAATTTCCACTCTGTTTGGCTGATGCCACTGGACTCTCCAAAATAATTCTTGGGCCTTCTTCAGTTTATATGTTGCTTATATCAAGGGACCTCGAGACTTGGCTGCCTCATGCAAATAAGGCAGATTTCCTTTAAGATGCTTTGTAAGTCATGTTGAAAAGAAGAtactaaactgatttttaactttaatgtCATTAGTTGCCATGACTTCCTTATTCTTTTCCCCCTTGTGGACATATTTTGTCAGACCTAGGGATGAATAAGATGTTATGATGACACTATGTATTCTCTATTGGGATTATTTAACAATCACCCAAAAACATTGCTGCTCTTTTTATCATTAAATTTCTGTacaagtattatttatttttgtaatttatagAAACTTTGTGAACTTCACACCCAATTATAGAGTGTAGGTTTTTTGGAGCTTGGATTTATGTTGCATCCCAGTAATTCCCTTTTTGTGTACGCATTCTATGATTTTAACCCATtcatttgaatgaataaatgattctCTTTGCATTGattatttgaatgaataaatgattctctttgcattgatta

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83942 lncRNA upstream 16465 25626713 ~ 25626937 (+) True G70808
TU83932 lncRNA upstream 29726 25613444 ~ 25613676 (+) True G70798
TU83916 lncRNA upstream 53215 25589967 ~ 25590187 (+) True G70782
TU83914 lncRNA upstream 56944 25586253 ~ 25586458 (+) True G70780
TU83912 lncRNA upstream 57868 25585326 ~ 25585534 (+) True G70778
TU84208 lncRNA downstream 233725 25898135 ~ 25901959 (+) False LOC113539772
TU84210 lncRNA downstream 233725 25898135 ~ 25901916 (+) False LOC113539772
TU84212 lncRNA downstream 233725 25898135 ~ 25901916 (+) False LOC113539772
TU84214 lncRNA downstream 233725 25898135 ~ 25901843 (+) False LOC113539772
TU84331 lncRNA downstream 259542 25923952 ~ 25928740 (+) True G71163
XM_026936668.2 mRNA upstream 90563 25270222 ~ 25552839 (+) True astn1
XM_026936669.2 mRNA upstream 90563 25270222 ~ 25552839 (+) False astn1
XM_026936671.2 mRNA upstream 90563 25270223 ~ 25552839 (+) False astn1
XM_026936670.2 mRNA upstream 90563 25270223 ~ 25552839 (+) False astn1
XM_026936672.2 mRNA upstream 90563 25270223 ~ 25552839 (+) False astn1
XM_026936640.2 mRNA downstream 43417 25707827 ~ 25881110 (+) True tnr
XM_034303945.1 mRNA downstream 43417 25707827 ~ 25881110 (+) False tnr
XM_034303944.1 mRNA downstream 81113 25745523 ~ 25881110 (+) False tnr
XM_026936641.2 mRNA downstream 120519 25784929 ~ 25881110 (+) False tnr
XM_026936643.2 mRNA downstream 157686 25822096 ~ 25881109 (+) False tnr
XR_003403979.2 other upstream 772139 24859026 ~ 24871263 (+) False kif2c
TU83028 other upstream 1533513 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 2323059 23318504 ~ 23320343 (+) True G69509
XR_004578016.1 other upstream 3881101 21756781 ~ 21762301 (+) False LOC113540377
XR_003404013.2 other downstream 43417 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 233725 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 564354 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 623880 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other downstream 623880 26288290 ~ 26292784 (+) False zgc:66427

Expression Profile