RNA id: XM_026936712.2


Basic Information

Item Value
RNA id XM_026936712.2
length 3286
RNA type mRNA
GC content 0.53
exon number 22
gene id copb2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31222287 ~ 31236901 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAATGCTTTGCGTGGCCACGTCATCGCTTCCGACAACACGTTTCAGGAAGTTCCACGTCAGATTAGCGGTGTAGCGGAGAAGCGCAGAGCTGCAGAGCGAAGCGGTGCTGTAGGTTTATTATACAGGAGAAGAGCAGACATGCCTCTCAGGCTGGACATCAAGCGCAAGCTCACGGCTCGGTCGGACCGCGTGAAAAGCGTGGATCTCCATCCCACCGAGCCGTGGATGCTCGCCAGTCTGTACAACGGCAGCGTGTGCGTCTGGAACCACGAAACACAGACCTTGGTGAAGACGTTTGAAGTGTGTGACCTGCCAGTGAGAGCTGCCAAGTTTGTCGCGAGGAAGAACTGGGTGATAACTGGAGCAGACGACATGCAGATTCGCGTCTTCAACTACAACACGTTAGAGCGCGTGCACATGTTCGAGGCTCATTCCGACTACATCCGCTGCATCGCCGTGCATCCTACTCAGCCCTACATCCTCACgagcagtgacgatATGCTCATTAAGCTGTGGGACTGGGAGAAGAAGTGGTCGTGCAGTCAGGTGTTTGAAGGCCACACGCACTACGTCATGCAGATCGTCATCAACCCCAAAGACAACAACCAGTTTGCGAGCGCGTCGCTCGACAGAACCATCAAGGTGTGGCAGCTGGGTTCCTCTTCCCCCAACTTCACTCTGGAGGGCCACGAGAAAGGAGTCAACTGCATCGATTACTACAGCGGAGGAGATAAGCCCTATCTCATTTCAGGAGCTGACGACAGACTGGTGAAGATCTGGGACTACCAGAATAAGACATGCGTGCAGACGCTGGAGGGTCACGCCCAGAACGTGTCCTGCGTCAGCTTCCACCCCGAGCTGCCAATCATCGTTACAGGATCCGAGGACGGCACCGTGCGCATCTGGCACTCCAGCACCTACCGGCTGGAAAGCACGCTGAACTACGGCATGGAGcgggtgtggtgtgtgtgcggcCTGCGCGGTTCCAACAACGTCGCGCTCGGTTACGATGAGGGCAGCATTATTATTAAGCTTGGTCGCGAGGAGCCTGCCATGTCCATGGACACCAACGGTAAGATAATCTGGGCCAAGCATTCGGAGGTACAGCAGGCCAACCTGAAGGCCATGGGAGACACCGAGATTAAAGACGGAGAGAGACTGCCACTGGCTGTCAAAGACATGGGCAGCTGTGAGATCTACCCCCAGACTATTCAACACAACCCTAACGGAAGGTTCGTGGTGGTTTGTGGAGATGGAGAGTACATCATCTACACAGCTATGGCTCTGAGGAACAAGAGCTTTGGTTCTGCTCAGGAGTTTGTTTGGGCCCATGATTCTTCTGAGTATGCAATCAGAGAAAGCAACAGCGTGGTGAAAATCTTCAAGAACTTTAAGGAGAAGAAGTCCTTCAAGCCTGACTTCGGAGCGGAGGgTATCTACGGTGGCTTTCTGCTGGGCGTCAGGTCCGTGAACGGCTTGGCTTTCTACGACTGGGAGAACACGGAGCTGATTCGGCGCATTGAAATTCAGCCCAAACATATCTTCTGGTCAGACTCCGGAGAGCTGGTGTGCATCGCCACGGAGGAGTCGTTCTTCATCTTGCGCTACCTGGCGGACAAAGTGGCCGCATCACAAGAGTCCAACGAAGGGGTTACCGAGGACGGCATCGAGGACGCTTTCGAGGTCCAGGGCGAGATACAGGAGATTGTGAAGACAGGTCTGTGGGTGGGAGACTGCTTCATCTACACCAGCTCTGTCAACCGGCTAAACTACTTTGTGGGCGGAGAGATCGTCACCATTGCTCACCTGGACAGGACCATGTACCTGCTGGGCTACATCCCTAAAGATGACCGGCTGTACCTGGGAGACAAGGAGCTGAACATCGTCAGCTACTCGCTGCTGGTGTCCGTGTTGGAGTACCAGACAGCCGTCATGCGGCGCGACTTCTCCATGGCGGACAAAGTGCTCCCCACCATTCCCAAAGAGCAGAGGACCAGGGTGGCCCACTTCCTGGAGAAGCAGGGTTTCAAACAGCAGGCACTGGCCGTGTCTACTGACCCAGAGCACAGGTTTGAGCTTGCTCTACAGCTCGGGGAGCTGAAGATTGGCTACCAGCTCGCCGTAGAAGCCGAGTCTGAACAAAAGTGGAAGCAACTGGCAGAGCTGGCCATCAGTAAGTGCCAGTTTGGCTTGGCACAGGAGTGCCTTCATCACGCCCAGGACTACGGaggcctgctgctgctggctaCAGCCTCTGGCAACGCCGCGATGGTGAGCAAACTGGCTGAAGGTGCTGAACGCGACGGCAAGAACAACGTCGCCTTCATGACCTACTTCTTACAGGGGAAGTTGGACCAGTGTCTGGAACTTCTGATCAGGACCAATCGCCTGCCGGAGGCCGCCTTCCTCGCTCGCACCTACCTGCCCAGCCAAGTGTCCAGAGTGGTAAAGCTGTGGAGAGAGAGTCTGTCAAAAGTCAACCAGAAAGCTGGAGAGTCACTGGCCGACCCCACTGAATACGAGAACCTGTTCCCTGGGCTGAAGGAGGCTTTCCTGGCTGAGCAGTACCTCAGAGAGACCTCTCTGGGCAAGAGCAGACCTGCCACTGACTACCCCCTGGTCACGCCCAATGAGGAGCGGAACGTGCTAGAAGAAGCCAGCGGTTATGAACCCAAAAACATCCTTCCCACCCACACACAGcaGACCGCTGGCCCTGAGGAGGCTGCAGTAGAAGCAGAAGTATCAGCAGTCAGAGCTGCTCCTGTAGTTACTCCGGTAGCTAGTGTGGCTCCTCCACAGCCTGAACCTGCTAAAAAAGTGGAGGAAGACATTACACAGTTTAGAGAAAAGActctggaggagctggaggacgACCTGGACAACCTGGAGCTGGACGACATCGACACTACAGACGTCAACCTGGACGACGACTTCTTAGACGACTGATCTCATAGCGAGAcgttcagttttatttaaaagaccaagcctttttttgtatttgttgtcCTGTCGTTAATCAGAAAGTCTCCCAGAAGTCAGGATATGGAAGGGTGATGTGGACTGAGAGGGATATCTTTTGGGGACAAGCTGTGTGTCGGGAAAAATATGGAGAAATCTTTGTCAAGTCAGAGTTTTGTACTAAATGCAGGATCTTCTTGTTTATTCCTTTTTCttcacttgcttttttttttgcctttacaTCAAACTGTACATTTCGAGTCATATCTGACCATGTGAATCCGCTTGATTCAAGTACTCAATAAATATATGCATTAATCtataaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030903 notochord development biological_process
GO:0030117 membrane coat cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K17302 COPB2, SEC27; coatomer subunit beta'

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87688 lncRNA upstream 190917 31030388 ~ 31031370 (+) True G74006
TU87694 lncRNA upstream 203813 31018111 ~ 31018474 (+) True G74011
TU87625 lncRNA upstream 449401 30772602 ~ 30772886 (+) True G73952
TU87604 lncRNA upstream 499485 30721031 ~ 30722802 (+) True G73935
TU87504 lncRNA upstream 628678 30593234 ~ 30593609 (+) False G73844
TU87857 lncRNA downstream 10189 31247090 ~ 31250757 (+) True G74158
TU87899 lncRNA downstream 118653 31355554 ~ 31356121 (+) True G74199
XR_004578070.1 lncRNA downstream 287202 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA downstream 290955 31527856 ~ 31528070 (+) True G74315
TU88025 lncRNA downstream 294552 31531453 ~ 31533223 (+) True G74309
XM_034303992.1 mRNA upstream 1267 31218928 ~ 31221020 (+) True LOC113540056
XM_026937114.2 mRNA upstream 9954 31130107 ~ 31212333 (+) False clstn2
XM_026937113.2 mRNA upstream 9954 31133269 ~ 31212333 (+) False clstn2
XM_034304124.1 mRNA upstream 9954 31157367 ~ 31212333 (+) True clstn2
XM_026936134.2 mRNA upstream 124358 31061737 ~ 31097929 (+) True spsb4a
XM_034303408.1 mRNA downstream 2667 31239568 ~ 31244079 (+) True si:ch211-119o8.6
XM_026936980.2 mRNA downstream 114300 31351201 ~ 31353130 (+) True c4h22orf39
XM_026935828.2 mRNA downstream 311379 31548280 ~ 31560707 (+) True prmt5
XM_034303928.1 mRNA downstream 329380 31566281 ~ 31581540 (+) True ap1g2
XM_026937095.2 mRNA downstream 347199 31584100 ~ 31586755 (+) True zp3f.2
TU87706 other upstream 124399 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 455155 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 455155 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1599250 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 2310183 28874356 ~ 28912104 (+) True G72873
TU87898 other downstream 114360 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 532921 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 709147 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 722121 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 722141 31959042 ~ 32330845 (+) False LOC117597173

Expression Profile