RNA id: XM_026936717.2


Basic Information

Item Value
RNA id XM_026936717.2
length 2697
RNA type mRNA
GC content 0.45
exon number 12
gene id dnajc3b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16356241 ~ 16366191 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCACCACGCTGACATGTAGGCTGATTTGAATTCTACGCCCAAGACCTGGAAGGTAGTTTCGCAAGCATAAAGTTGACAGCTGATCGTAATAGGCATTAGAATGGCCTCTCACCTCAACTGTCTGAAATGACAATCCAGCTTTATAGCGCGGAGTAGGAGCTTATAAACAGAGCTTTATCGGAACTTTATTTCTGCGGTCTGATAAGGCAGTCGGAAGCATTTGTCAGTCGGACACGTGAAACATCATATCGGGAAGTTGATGTTTACCTGTAAAGATTATTTTTTGGCGATATCTTCATTAAAAGTTGATTTTACGTCTGTTCAATTTTTTGGATTAGTCGtcagaaattatatatataaaaaagtttaattaagGAGGTGTGACGATTTAAAACGATGGAGTCGGGACGCCGGAGAGGTTTAAGTAGCCTCCTGTCCTCAATATCACTAGTCTGTGTCGTCCTGGACCTGCAGCTGGACGGTGTGTTAGGTGCCACCCATGTGGAAATCGAGCAGCACCTGGAGATGGGCCGCAAGCTTCTGGCCGCAGGGCAACTGGCGGAGGCGCTCTCCCATTACCACTCAGCAGTTGAGGGTGACTCAAAGAATTACCTGACTTACTACAAACGTGCGGCTGTGTTTCTGGCCATGGGGAAATCCAAATCAGCCTTGCCCGATCTGACGCGAGCCATTCAGCTTAAACCAGACTTCCTAGCTGCTCGGATACAGCGGGGAAATATTCTCCTGAAGCAGGGGAACACTCAAGAAGCCAGAGATGATTTCCAGGAAGTGTTGCAGCGCTCTCCAGGCACGGAGGAGGCCCATAGTCAGCTCCACAGAGTCGAGGAGCTGGAGCAGCTCCAGGAGGAGGCACATAAGGCCCATCACCGCGGCgattacaccaccaccatccAGGTGCTGGAACGGGTCATAGAGCTCTCTCCTTGGGATCCAGAATCTCGGGAGCTAAGAGCAGAATGCTATATCCGCATTGGGGAGCCAAGGAAAGCGATATTAGACCTGATGCCTGCGGCACGGCTCAGAACGGATAACCGAGCGGCTTTTCTCAAACTCAGCCGTCTGCTGTATGACCTGGGAGAACACCATGAGTCACTCAGCGAGATCCGGGAGTGTCTGAAGCTGGATCAAGATGATAAGGAATGTTTTGGTCACTACAAGCAAGTGAAGAAGCTTAGCAAACAGCTGGACTCTGCTGAGGAACTGATCTCAGAACAGCGATATCAAGAAGCAATTGAAAAGTATGAGTCTGTAAAGAGGACAGAACCAAATGTTCCATTCTACACTAGCAAAGCAAAGGAGAGGATCTGCTTTTGTCTAGTGAAGAATAAGAAGGCAGAAGAAGCAATAGACACGTGTTCAGAGGCCCACCAGAGAGACCCTCAAAATATTCACATCCTCCGAGACAGAGCCGAGGCCTACATTCTGCTACAGGACTACGAGAAAGCTGTGGAGGATTATCAAGAGGCACGGGAGTTTgaccaggagaatcaggagatTCGTGAGGGTCTCGAACGTGCACAGAAACTCCTGAAGATATCACGTAAAAGGGATTACTACAAAATCCTAGGAGTGAGCCGGACTGCTAACAAACAGGAAATCATTAAAGCATATAGGAAATTGGCACAGCAATGGCATCCGGACAACTTCCAGtctgaagaggaaaagaagaaggcTGAGAAGAAGTTCATCGACATTGCTTCAGCTAAGGAAGTTCTTACAGATCCAGAGATGCGTCAGAAATTCGACTCAGGAGAGGACCCCTTGGACCCCGAGAACCagcaaggaggaggaggaggaggaggaggctggCCTTTTGGCTTCAATCCCTTTGAGTCGGGTGGAAATTTCCACTTCAAGTTCCACTACAACTAATATGGCTATGCCATTGAATATGGTGGACATGATTATTATGGACAATGGACTGGACTTATTTAAAATCCCACAAAGGGAAATTAAGAAGAAATTCCACATATTCTTCAGATGACTCTTCTGTTGGCTCTTATCACACAGGGGTAGTTGTGTGCCAATTCAGACTTGAATATGCCGACTGTTGGATTTCTTAAGGAATCAGATGTTCTTGCGTGATTGAAAAATTTGTTTGCTTGACTGCGTGCAGTCAATGGCTGTGATGAATGAAGtcttatttagtatttttcaaAGCTATACCATTTCAGCTTTTTCAGCTGACTATCTCTGTGGGGTTTGCTTTTCCATCTAtgttccatctctctctctgtcacacacaagTCTTCTGTCCTCCCATTTTTCTCTAACTGAGTAGTTCATATTGGTGGGTTctgatttcagtataaaataagtgtgtctctgtgacactgaatgtttttaggGTTCAGTCCCAACACTCCAgactttattacattaaatcagtattgcactttttttgtgcatttaattGATTGGTATAGTTTGCAGGGttttacaatttcttttttgtagcccatttctgttaaacataatCAGATGTCAGTACATCAGACCACATCAGTTACTGAACGAATGGAGAACCTACAAGTCTAGTTCTTGCAATCAGtccaagattcaagattcaagaggtTAATTGTCATATGCACGGTGAAAACACAACGGTTTAGaccatacaatgaaattcttactttgCATGtctccctttaaaaaaaaaaaaaaaaaaagagag

Function

GO: NA

KEGG:

id description
K09523 DNAJC3; DnaJ homolog subfamily C member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77337 lncRNA upstream 125126 16223418 ~ 16231115 (+) True G65335
TU77172 lncRNA upstream 292780 16062088 ~ 16063461 (+) True G65199
TU77152 lncRNA upstream 301096 16019857 ~ 16055145 (+) True G65184
TU77137 lncRNA upstream 354780 16001155 ~ 16001461 (+) True G65170
TU77079 lncRNA upstream 485470 15869198 ~ 15870771 (+) True G65115
TU77409 lncRNA downstream 25938 16392129 ~ 16392363 (+) True G65382
TU77422 lncRNA downstream 64270 16430461 ~ 16430686 (+) True G65395
TU77544 lncRNA downstream 65754 16431945 ~ 16442900 (+) True G65495
TU77609 lncRNA downstream 148446 16514637 ~ 16514841 (+) True G65542
TU77650 lncRNA downstream 203496 16569687 ~ 16577737 (+) True G65580
XM_026936718.2 mRNA upstream 278 16352761 ~ 16355963 (+) True cldn15a
XM_026936976.2 mRNA upstream 6840 16343344 ~ 16349401 (+) True fis1
XM_026935826.2 mRNA upstream 37075 16310213 ~ 16319166 (+) True LOC113539780
XM_034303999.1 mRNA upstream 37075 16311214 ~ 16319166 (+) False LOC113539780
XM_034303998.1 mRNA upstream 46084 16299941 ~ 16310157 (+) True mus81
XM_026937153.2 mRNA downstream 1776 16367967 ~ 16370957 (+) True LOC113540582
XM_026937150.2 mRNA downstream 5806 16371997 ~ 16411701 (+) False chd3
XM_026937149.2 mRNA downstream 5810 16372001 ~ 16411701 (+) False chd3
XM_026937151.2 mRNA downstream 5816 16372007 ~ 16418930 (+) True chd3
XM_026937152.2 mRNA downstream 8747 16374938 ~ 16411701 (+) False chd3
XR_004578074.1 other upstream 37075 16310213 ~ 16319166 (+) False LOC113539780
XR_003403994.2 other upstream 316257 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1697305 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2086901 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2636787 13705576 ~ 13719454 (+) False gc2
XR_003404046.2 other downstream 1765 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 394328 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 394558 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 394790 16760981 ~ 16761107 (+) True LOC113540745
XR_003404113.1 other downstream 395075 16761266 ~ 16761338 (+) True LOC113540743

Expression Profile