Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026936718.2 |
| length | 1451 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 5 |
| gene id | cldn15a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 16352761 ~ 16355963 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0048546 | digestive tract morphogenesis | biological_process |
| GO:0035148 | tube formation | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| id | description |
|---|---|
| K06087 | CLDN; claudin |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU77337 | lncRNA | upstream | 121646 | 16223418 ~ 16231115 (+) | True | G65335 |
| TU77172 | lncRNA | upstream | 289300 | 16062088 ~ 16063461 (+) | True | G65199 |
| TU77152 | lncRNA | upstream | 297616 | 16019857 ~ 16055145 (+) | True | G65184 |
| TU77137 | lncRNA | upstream | 351300 | 16001155 ~ 16001461 (+) | True | G65170 |
| TU77079 | lncRNA | upstream | 481990 | 15869198 ~ 15870771 (+) | True | G65115 |
| TU77409 | lncRNA | downstream | 36166 | 16392129 ~ 16392363 (+) | True | G65382 |
| TU77422 | lncRNA | downstream | 74498 | 16430461 ~ 16430686 (+) | True | G65395 |
| TU77544 | lncRNA | downstream | 75982 | 16431945 ~ 16442900 (+) | True | G65495 |
| TU77609 | lncRNA | downstream | 158674 | 16514637 ~ 16514841 (+) | True | G65542 |
| TU77650 | lncRNA | downstream | 213724 | 16569687 ~ 16577737 (+) | True | G65580 |
| XM_026936976.2 | mRNA | upstream | 3360 | 16343344 ~ 16349401 (+) | True | fis1 |
| XM_026935826.2 | mRNA | upstream | 33595 | 16310213 ~ 16319166 (+) | True | LOC113539780 |
| XM_034303999.1 | mRNA | upstream | 33595 | 16311214 ~ 16319166 (+) | False | LOC113539780 |
| XM_034303998.1 | mRNA | upstream | 42604 | 16299941 ~ 16310157 (+) | True | mus81 |
| XM_026936115.2 | mRNA | upstream | 54040 | 16291819 ~ 16298721 (+) | True | ovol1a |
| XM_026936717.2 | mRNA | downstream | 278 | 16356241 ~ 16366191 (+) | True | dnajc3b |
| XM_026937153.2 | mRNA | downstream | 12004 | 16367967 ~ 16370957 (+) | True | LOC113540582 |
| XM_026937150.2 | mRNA | downstream | 16034 | 16371997 ~ 16411701 (+) | False | chd3 |
| XM_026937149.2 | mRNA | downstream | 16038 | 16372001 ~ 16411701 (+) | False | chd3 |
| XM_026937151.2 | mRNA | downstream | 16044 | 16372007 ~ 16418930 (+) | True | chd3 |
| XR_004578074.1 | other | upstream | 33595 | 16310213 ~ 16319166 (+) | False | LOC113539780 |
| XR_003403994.2 | other | upstream | 312777 | 16023195 ~ 16039984 (+) | False | LOC113540079 |
| XR_004578093.1 | other | upstream | 1693825 | 14632030 ~ 14658936 (+) | False | zgc:194930 |
| XR_004578085.1 | other | upstream | 2083421 | 14255744 ~ 14269340 (+) | False | brms1 |
| XR_004577999.1 | other | upstream | 2633307 | 13705576 ~ 13719454 (+) | False | gc2 |
| XR_003404046.2 | other | downstream | 11993 | 16367956 ~ 16370684 (+) | False | LOC113540582 |
| XR_003404110.1 | other | downstream | 404556 | 16760519 ~ 16760583 (+) | True | LOC113540740 |
| XR_003404111.1 | other | downstream | 404786 | 16760749 ~ 16760819 (+) | True | LOC113540741 |
| XR_003404115.1 | other | downstream | 405018 | 16760981 ~ 16761107 (+) | True | LOC113540745 |
| XR_003404113.1 | other | downstream | 405303 | 16761266 ~ 16761338 (+) | True | LOC113540743 |
