RNA id: XM_034304036.1


Basic Information

Item Value
RNA id XM_034304036.1
length 1786
RNA type mRNA
GC content 0.45
exon number 11
gene id spata6l
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18020211 ~ 18028051 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agcacatatgggtgtgatggttagatgtccacaaccttttggccatgtagtgtataatCCTGTGCTAGACACAGATGTATTAAAATGGCATATTGATTAGTATGAGCTTTTCTACCTGGCTTATGTGTACTTAATAAATTTGGCATTACTTTTCCCTGTACTAACTTACACCACTGTTACTGAACATCTGCATTAATATTCCAAGTACATGGTAACGTTGTACTGTTTTCAGTTAGGCTGCCGTcataaaaatacaacacacatcTGATTATATTGGTATGAAAGCTGTTAACAAGGGCCTCACGATAAAGACTACAAAACCCAACAACCCCATTTCAATTTCCGGTGTGTAGTTCCTCGtaaagggaaaataaaagtCTCCAATATAAATACTATGAAATACCATGGAAACGCGACGCTATCTTGAATATCCGTCGTGCTGTAATTAGCTGGCATAACGTTCAAAAAGTCAGAGTTTTAGTTTCTCAAGTAAACCCGAACTTCTGAATTACTGGACATATTTGAGCAATGCCTCAGAAAGCAGTCAAAGTGGTGGCTGAACTTCACGTTAAAGCGGTGACCTGTCCTGGAGTGCACCTACCAGCCAAGGATGACATTTACCTCAGTGTGTGCCTGATGAACCAGTACAGAATGTCACAATGCCTACCAGCTGTATTCCCATTACGGTTTAAGAGGAAAATGACATTTGACAAGATATTCAAGTATGCCAGTGATCCTGCAGATGTTGCTGAAATGTTGCAAGGTGAAACTGTTAAAGTTGAGCTTATACAGCTGATTCCCCCAGTTGGGGAAGTGTTGGCCGTATATGAGAACGATGCTAGAAGTTTTCTTTTCCCAGAGCCTAAGCTGGTGCCTTCTTTTTCTGGGAGAGACCATGAAGTGCTAATGACAAGAGACCCCACTTTCCCTGGTATTTCTCCAAGGTTAGAGTTCTCCACCAGGACGAAAATCAGCGAGTGCTCTGAGAGGGATCTTTTCCAGAGTGTCCCTGTGAGAGTAATAACAAGGAAAAGAACAAAGTCGTCCAGACATcagggctgcttctctgcacCAAGAGGCCTCAGGAACACAGAGATGCTGAGGTCCCGTTCCCTCTCTCCGTTCAGGAGCTCCGGTTCAAGCCGGAACAACTCTGAAACTGTAAATAGTCATgTCCCTGATGATAACTCCTCAGACACAGATGATCTCCTTGACAACACAGAGGAACCATCCCAGTGTAATCCTCTTTTGGGATATGAGGGATCTCCCAGCTCAGTTGCACTGAGTCGCTCCAAAATGGCGTGCCCGAAGCTGAACAGTTCTTTCTTGTACTCGCCAAACTCGTGGGAAGAGGTTCAGGAACGAGTGCGCAGTCTCATCACCTCTCCCCGAGCCGTGCACAGACTGGCCTATGGTGCAACGAAGTCTGAAAGAGACGAGGTGTTAGAGCGCAGGTCCATATCACAGCCCTCAACTTTCTGAGAGCAAGGgtttttcaggtgcactttcatctGCAAGTCTCCCATTCTACCAAAAGGTGTtctgttggattcagatctgctgactgggaaggccactgaagaacactgaactgtTCATGAAAGTTTGAGAGGACTTAAGCTTTGTGACATTGTGCATTATTGTGCTGGCAGTAGCATTAGAAGCGATGATTGATTAGTATTAACAGCCCAAAGTGTGCCGagaaaacattcctcacacCACTAtgccacctccaccagcctggactgttgacacaaggcaggttgggtccatggattcatgctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78493 lncRNA upstream 27965 17990435 ~ 17992247 (+) True G66237
TU78438 lncRNA upstream 44853 17973998 ~ 17975359 (+) True G66186
TU78405 lncRNA upstream 101115 17904611 ~ 17919097 (+) True G66169
TU78403 lncRNA upstream 101115 17911594 ~ 17919097 (+) False G66169
TU78468 lncRNA upstream 143138 17873399 ~ 17877074 (+) True G66214
TU78533 lncRNA downstream 64467 18091588 ~ 18096583 (+) True G66263
TU78778 lncRNA downstream 84564 18111685 ~ 18111915 (+) True G66426
TU78810 lncRNA downstream 150113 18177234 ~ 18177642 (+) True G66452
TU79006 lncRNA downstream 354835 18381956 ~ 18382162 (+) True G66637
TU79026 lncRNA downstream 403441 18430562 ~ 18431136 (+) True G66654
XM_026937096.2 mRNA upstream 1133 18015129 ~ 18019079 (+) True gabarapb
XM_026935856.2 mRNA upstream 9250 18000158 ~ 18010962 (+) True ctdnep1b
XM_026935857.2 mRNA upstream 21996 17992640 ~ 17998216 (+) True elp5
XM_026936445.2 mRNA upstream 51901 17966324 ~ 17968311 (+) True LOC113540162
XM_026936444.2 mRNA upstream 69824 17936846 ~ 17950388 (+) True tnk1
XM_026936697.2 mRNA downstream 22168 18049289 ~ 18082430 (+) True rap1gds1
XM_026936698.2 mRNA downstream 22168 18049289 ~ 18082430 (+) False rap1gds1
XM_026936699.2 mRNA downstream 22169 18049290 ~ 18082430 (+) False rap1gds1
XM_034303317.1 mRNA downstream 86312 18113433 ~ 18143631 (+) False frem1a
XM_026935846.2 mRNA downstream 86323 18113444 ~ 18143631 (+) True frem1a
XR_003403977.2 other upstream 9250 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 255678 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 400133 17609704 ~ 17620079 (+) True LOC113539940
XR_003404112.1 other upstream 1258337 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 1258565 16761572 ~ 16761647 (+) True LOC113540744
XR_004577948.1 other downstream 86323 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 170191 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 829335 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1801190 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 1801698 19828819 ~ 19828890 (+) True trnah-gug_5

Expression Profile