RNA id: XM_026936755.2


Basic Information

Item Value
RNA id XM_026936755.2
length 3892
RNA type mRNA
GC content 0.48
exon number 9
gene id ajuba
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11183735 ~ 11191994 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CgctacagaagaagaagaaagaagggggAGGTAGAGAAAAATtgcagcaaagaaagaaagttaaTCGGCgttgtttcattttcagcttttaaGAAGACGTTTTCCGCGCTCGTTTCCCTCTCTGAAGGTTTGGATAAGTGCTCCGACGCTTTTGCGACTTcttcacacatttctttttgtcCCTCATGTTTGAGGCTTTTCCACTATTTTTTTGGAGTTCATTTTCTTTCCAGCAGGATTGGAAATAGTGGGAAAGCTCAGAGGAAGCGTGTCCGTGTGCTCAGGTAGACATTATTAGTTGGTGTACAGCGTGTTTCTGTCTTACTGGTGAAGCCGAAGCCTTTTCTCTTAGAAAGCTGAGGAGAAAACGACATTTTTCTGCCTTCCCCGTGTTTGGAGCCAGTTAGCTGTGGCACAGCGGCTGCAGTGTCGCAGAACCACAGCTTATCTGACCACTGAAGTAGCTTGAAGTTGACTTAAAGGTGTCATATACCTGCTATCAGCAACACGTCTTTGAAACTACGGACTAAGTGGCAGTTATTAGGAGACTTTTCAGCtgcaaccagaaaaaaaaaacaaaaacacaaacagcagcCTTTTCTGAATGTGACCGCTACATTCACCACACTTCAGCCGACAACTACAACGaaataactttcttttttttatgaagacTAGCGTGCGTTAAAAGCTCGGACATCAGGTGCTGAGGTAAAGCGTCTTGTTTTGTTACTTGGCAGCTGGCGACGGGAGCGCGAGCAGGGTGGGAAGGCATCATTCAGCCGCTAGCAGATGGATGTGCATGCTTCCCTCCTCACATGCACCAGCAGATCCGCGACGTGGAAACTTTCAGGCCACATCAAACATCTCTTCAAGTCTCATTAATCCGAGATGTAGCCCACATGCCAtaacgtattttttttttaacttatctttattttatctgAGATATTTATTGTTAGCTgaacaaacaatacaaaacagcttttgaactgttttttttttttttgtcttaatccTTGTTTGTTGTCTTTGTCATTTCATTTGCTGTAGATTTAGAAAGACTTGaacattgttttgtgtttacacTGTATTTATGATACTGTATTTAAGCTGTAGTCTTTCAGGtgtcatttcagaaaaaaaagaaaagtgtttaaCACTTGTTCAGGCTATTTATTAGAAATTTGACATCATGGAGAAAATTGGTACCAAATTGAAGCAAAAGTTTAAACTGGCCGATTCTGGCAGTGTCAAGtttagcaaaaagaaaaatgaactcTCCAACACAAATAACAACAGTAACAGTGTAAGTGGTGCACCGCCAGTTGTGACCCACTTGAGCCCGGCAACAAGCCCGTCACCTGCGAGTACGGTTCAGTTCAGCCTCACCTGCTCACCCTCCATTGAGGCATCTTCAGGCGTCAGATCGGCAAAGGTGGTCAACTCTCAGAGGGTGTCTACCTGTGTTGCCTCCACCACCTCACCATCTGTACCAGAAGAATCTGGGCCTTCGCTTGAACACCACCCAGTGACTCTTGCTCCTTTGCGGCGCCGCTCGCCTCAGCAGCGCGTGTCTTGCTACCTGCCTGACACTGTGGAAGGCCGAGGTGCCTGTGATCAGTCCAGGCGTACCGATTTGCCCCAAGGTGAGCATGCCGACCCACAAGGTACTTACAGCCCAAATTCGCGAGTCGCCCTGAACCAGCGCCGGTATTCTCTGGAGCTTCAGCAGCTTGTGAGAAGGCAGCAGCTCCTTGCCCAACCCCCACTGTCTTCCATGCCGCCTCCATACCCAACACCTAGCCCAGTCACCCGCTCAGGTTCTGCAGAACCAAGCTTTCTGCCTGAACCAGAACGCCACAAACGCCTCTCCCTGCAGGAGGCACTGTTCTACAAGCGCTGGAGCTCTGGAGGAGAGCCATGGGACAGCGGCAGGCCAGCATCACTTTCACATCCTCCAGTGAGGAGCCATGAAGGTGCTGGGGCTACCTGCCTCTTTCCTTCTGGACCAGCACTGAGCCCCTGCTCCTCCTTTAGCCTGCAGGAGTCAGTGTTAGCCAGCCCACGCTCAAGCTTTGCCAGCAGCACAGCTagtggaggaggtggtggtggttggtggtggtggaggaggggCACAAGCGGAAGTCCTATCGGTAGCCCGTGCAGCAGCAACCGCACCAGCGGCATTAGCCTTGGCTACGACAGTCGCCACGTGTCTGGCCCTGCCCAGCCGCTGCACTTCTCCTCCACACAGCTAGGTGGCACCACCACTGGGCATGTGTACCCAACATCTGGCCCTGGGAAAGCACCCCCAATAGAGGTGTGGAGGGACTATCTAGAACGAACATCAGGGATCGGAGGAGGTTTTCAAGATGGCCGCCACTCATACCCACCAGCGGGCAGTTCCCCAGCAGCAACAGAGTGGTGGAGTGGCACAGAGCAACGGGGACCAAGGACAGAGAGCACAGGGGAGCGGATGAGGCACTCAGACCTGCCAGGTACCCACTACCAGCAGGAGCTGACCCGCCTCCTACTGAGGGACATGACATTGGAGGGAGAAGAGCAGTTGGGAGGACTAGCCTTGAGGGAGCAGCCTCTGTCCACCTCTGCACCTCCTGCAGCCAATGTATCTGTGGCTCTGAAACCTCAGGAGGAACAGGTGTCTCTGAGGGAACCACCATCAGCCCTGGACCGGCAAGAATTTTTTGGAACATGTGTGAAGTGTGGAAAAGGTGTGTATGGTGCAGATAATGCTTGCCAGGCTCTGGACAGTCTGTATCACACTCGCTGCTTCACCTGTGTGTCCTGCGGTCGCACACTTAGAAACAAGGATTTCTACAATGTTGGTGGATCAGTGTACTGTAAGGAGGATTACATGTTTTCTGGCTTCCAGGCAGCAGCAgaaaaatgctgtgtgtgtggccatCTGATCCTGGAGCAGattctGCAAGCCCTGGGGAACTCGTATCACCCGGGCTGTTTCCGCTGTACGGTCTGCTCCAAGACGCTGGATGGCGTGCCTTTCACAGTGGACTACCTCAATAACGTCTACTGCGTTGCAGACTACAACAGGACATTCGCTCCTAAATGCGCTGCCTGTTTACAACCTATTTTACCTGCTGAGGGCAGTGAGGAGATTCTCAGGGTGGTATCCATGAACAAAGACTATCACTTTGAGTGCTATCACTGTGAGGAGTGTGGGAAGCAGCTCTCTGATAAACCAGGCTCTCAGTGCTTCCCCCTGGACTCCCACCTCCTCTGCCACTCCTGTCACATGAGCAGGGTGTGCGCCTCTCACAACCTTCccccacacaacacacactaaatgTGGGGACCATTCTGTTGGACCAATACACTGCTTTGTAATATGTATGCATATTTGTGACCAAGATTATTTGTCACTGTCTTTTAAAGTATTTGctcttttcttgttcttttccatcacctgcacacacatgcTTCAGATTGCAACACTGAAAAGAGGTAGTGTGATGTTATTGACTGATTTTTCAAACTTGAGGTCCTACATTTCAAGTGTGGAACTAGAGGGATGTGTGCCCCTCTAGTGGCCAGTAAGTTCACAGACAGAATCCTGCTGACTAAACTTTCGGTACAAGGTTTGATCACTGTTGTCAACCTTACTAAGTTATTAGGGCATATGAAATATCATGTTGAGCTACTGTTTATATTCTCATATCTgctgtagaaaaaaatacaagggACTTATtcttaactttttaaaaaaaatatttaatatcactAGCAAAGGTTTTGCACTTAAATGAACATGTTTACCttttaagagattttttttttaaaagaaatgtttctGCAAAAGAGTAAAAACATTCCTGTATCTGTCTTTATTAATAAACTTCTTTCTATCTCA

Function

GO: NA

KEGG:

id description
K16682 AJUBA, LIMD1, WTIP; LIM domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577937.1 lncRNA upstream 1 11182770 ~ 11183734 (+) True LOC117596983
XR_004577928.1 lncRNA upstream 160939 11020133 ~ 11022796 (+) True LOC113540371
XR_004577929.1 lncRNA upstream 160939 11020139 ~ 11022796 (+) False LOC113540371
TU73963 lncRNA upstream 273593 10907025 ~ 10910142 (+) True G62416
TU73906 lncRNA upstream 318874 10864655 ~ 10864861 (+) True G62373
TU74145 lncRNA downstream 23161 11215155 ~ 11215743 (+) True G62554
TU74174 lncRNA downstream 83445 11275439 ~ 11366783 (+) True G62572
TU74196 lncRNA downstream 128103 11320097 ~ 11360515 (+) True G62585
TU74200 lncRNA downstream 130476 11322470 ~ 11325192 (+) False LOC117596981
XR_004577934.1 lncRNA downstream 130482 11322476 ~ 11325752 (+) True LOC117596981
XM_026936767.2 mRNA upstream 12395 11159921 ~ 11171340 (+) True mmp14a
XM_026936763.2 mRNA upstream 46309 11130175 ~ 11137426 (+) True LOC113540324
XM_034303254.1 mRNA upstream 72641 11090981 ~ 11111094 (+) True LOC113539896
XM_034303253.1 mRNA upstream 72641 11090981 ~ 11111094 (+) False LOC113539896
XM_034303247.1 mRNA upstream 120207 10989215 ~ 11063528 (+) True LOC113540335
XM_026936802.2 mRNA downstream 48680 11240674 ~ 11244577 (+) True dhrs4
XM_026936804.2 mRNA downstream 63944 11255938 ~ 11258662 (+) True cideb
XM_026936747.2 mRNA downstream 191440 11383434 ~ 11400606 (+) True si:dkey-183c6.8
XM_034303244.1 mRNA downstream 248094 11440088 ~ 11445185 (+) True LOC113539902
XM_034303260.1 mRNA downstream 261936 11453930 ~ 11462747 (+) True LOC117596977
TU73719 other upstream 520328 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 618011 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 652207 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 652691 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 688265 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 452908 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 1100520 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2226383 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2278775 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2366629 13558623 ~ 13562266 (+) True cited1

Expression Profile