RNA id: XM_034303246.1


Basic Information

Item Value
RNA id XM_034303246.1
length 3615
RNA type mRNA
GC content 0.46
exon number 11
gene id nelfa
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10646651 ~ 10658141 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTAACATTGtagtgcactacctagggtGTACGAGACATTACGTAATACCTGCGTAGTGCACGTGCACAGGGAATAGCGATGCGTTTGGGATTGGGTGAGGGATTTAGAAGCGATAGCAGGATTAGCCAGGTGCGAGAGTTGCTATGTAGTTTGCAACAAAAAATGGATGATATAGAATCGTTATTTAGGGTGCTGTGAGGATCAGTGCAgttcagtaaacagtaataaatctTTATGCATTTATTAACGCAGTGCAAAAGAATTGAAAAGGTGAAGTTTCAGTCGAGCAGCCGAGGCTAACAGGCTAAGGCAGCTAAACTAGTCAGAGGGGCATTTGGTTTTTGGAGCGTATAAAGGCACCAGTGCTGTTTGTGATGTGGAAATGATTTCCTGCTCAGTTTTTTTAGCAAGTTGTCGACATTGTGAACAGTTAGTGATGAAATGAAAGTGATGCTTTCAGTTAGTTACTAACAGCCGAAACTTGGCGCTTCAGTGAGGCTGATGGAGATGGGCGGAGTTTTCCACTACACTTTCAACACTGCACCTGGAAATGATCTTCTGTTACTTTTTCACTGCCATcataatattaatgaatgaattttttacTGCAATCATGTGAAGTATTGACTTTATTGTCGTGGTTAATGGGTTCattggccacgccccctttatTAAGTTGCCTTCATGTGCTGCCTGAATTGTGTTGATTTAATTTCCCAACCTGCAAATTGCACACAAACCTCACTTAAATGTGGAATTCCAACTGCGAAGctttattaacaatatttaGACAACTCCCTGCCAttcagagattttaaaaaaatcaatataaggTTTCAGTTTTGTACTctacatcagattatttgctgtgaATAAATACAGATTATTTGGGAGTTTTGTGGAAAtgagaacagcagcagcaaaacTGTTAAGAAACGAGGCTGagactgatttttttctagcccagactgtagattcatgcagcctgtCACTGCCTACATTTGAATGCACATCAGAATATTCCcatatacatggttgttgtaagtatgcctgagttgccattcctaaatacctagcctacagctaagcatctgttagcacccacagtTCCTTGCGGACTGATGaaaatttccgattaaaacaggcatgttccaggggtgggaattggaatttggggaatcagaatattgtcttaatctcaATCGGGCAATCAGATTGCGGCATTTACACGCCTCAGTACTAATtcgaatattgccaaattctgattaatatcggaatattgatgtgcatgtaaacgtagccactgacagacacacactccctAGATTTGATtaccatttgggctgatattttcaTTCCATTTCACTGGAatcagtgattgagaaggcacATGTCATCAGTGTAATGAAAGCAAAAGAGATGGATTACTCtcacatactgtttttttttttttcctccaaatgtCTTTTGTGGAGAAAGtaaaagtagatagactaagCAGAAAGTGTCCATGCAAactacaaattacacaaaagggcagaacacagagctATGAAGGATGCTCTGTCAGAAATCATTCAGTTGGCCACAGTGGACACGGAGCCCTGGGTGCTGATGGTGGCCGATATCCTGAAGTCATTCCCTGAGACGGGTTCTCTCAACCTGGACCTGGAGGAGCAGAACCCCAATGTGCAGGACATCCTGGGAGAGCTGAGAGAAAAAGtgagtgagtgtgaggcGTCGGCCATGTTGCCTCTTGAGTGTCAGTATCTGAATAAGAGTGCTCTGACCACGCTGGTGGGTCCCCTCACACCTCCTATCAAACACTTCCAGCTCAAGAGAAAACCCAAAAGTGCTACACTGAGAGCTGAGCTTCTCCAGAAGTCTACAGAAACTGCGCAGCAGCTAAAGAAAACAGCAGGAGTGCCTTTCCACGCTAAAGGACGAGGTCTCGTCAAGAAGATTGACACTACAACACCACTGAAGGGGATCCCCAAAGCTCCGTTCCGCAGCCCCACTGCGCCGAGCATGTTCCCTTCCAGTAACAGGACGCCCATCACCCCGGCTCGCACGCCGCTGCGCAAAGAGAGAGGGGTCAAGTTATTAGACATTTCGGAGTTGGACATGGTCGGAGCAGGCAGAGAAGCtaagaggagaagaaagacaCTGGacACAGAAGCAGGAGAGAAGGCGGCCAAAGAGGAGGCAGTGGTGGAGAACGCAACCCCCGACTATGCTGCCGGCCTGGTATCCGCACAGAAACTGGGGGCACTAAACAACGAGAGTGCACTACCATCGACCAGCTACCTCCCAGCCACGCCCAGCATGGTGCCCTCCTCCTCTTACATTCCCAGCTCCGAGACGCAGCAGGCCAGCACAGGTGCTACAAACCGGCAGCCAGAGGAATCGACGGCGAGTGGCGCCGCAGCCTCCACACTTCCGGGTCAGTTTAAACAGAGAGCGCCCATGTACAACGCCAGCACTGCCAGTCCCACAGCCCCCACCTCTCCCACCACGCCCACCAGCACACCCCACAACAATGCCCCTCCCACTGCTGCCACTGCAACACAACCGGACACGGCCACGCCTCCATCCACCACCGCAGCTCAAGCCACGCCCACGCCTGCCCCCCAGCAGCCACAGCCCAAAAAGAATCTGTCACTCACGAGAGAACAGATGTACGCCGCGCAGGAAATGTTTAAGACTGCAAACAAAGTCACCCGACCTGAGAAAGCTCTTATCCTGGGCTTCATGGCAGGATCAAGAGAGAACCCATGTCCGGAGCAGGGTGACATCATCCAGATCAAGCTGAGTGAGCACACAGAGGTTCTTCCTAAAGCGGACGGTACAGGCAGCACCACCATGCTGGTGGACACAGTGTTTGAGATGAACTACTCCACAGGCCAGTGGACCCGCCTCAAAAAATACAAACCCATCACCAATGCATCCTGAGGaactggaaacacacacatatacatacatacaaatccATCACATTGTCTTTTGAAGAAGgcaacacacagacaaatcTTACCCTTGCTctgacagacaaacacacacacacacacacacacacacacacacactcactcactctatcTGGGCCAAAATGACAGATTAAGCAACTGTCTTGATGGTAAAGGGGTGTTTAAGAGGAGCGAGGTGGACTTCTTGTTTTGTTAAGCTCACTTCCTGTCCGTGTTCCTGTATTGCCAAAAGTCAGGGACCTACtttctatatttttgtttttgttttgtggtttgtaATATGTTCTTTAATTATCATTGCCCGGTTGTTGAAGATGGGTTGGAATAGAGGTGAGGTTGTTGCTCTAGGATGCTTTTAGCTTCATTGATTGACACCTGTATGTTTGGCCTTGCACGCCAGTACATgttccaaaacacaaaaacatgtccATCTGTTTCAATGTGAGAATGtaagaaaatatttacatttgcaaaaaaatataaaatgtaggTTGTTTGCTggttagattttttatttttttttttttttttttttttttttttttttttttttggaatgttcTGGAggatgtgtgtttcagtcatcCAGAAGAACGAAAGAAATAAATTGATCCATGTCCGGACAA

Function

GO:

id name namespace
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0006414 translational elongation biological_process
GO:0032021 NELF complex cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15179 WHSC2, NELFA; negative elongation factor A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73670 lncRNA downstream 74291 10572155 ~ 10572360 (-) True G62183
TU73657 lncRNA downstream 108062 10538298 ~ 10538589 (-) False gba2
TU73654 lncRNA downstream 112229 10534073 ~ 10534422 (-) True G62167
XR_004577943.1 lncRNA downstream 147564 10497521 ~ 10499087 (-) True LOC117596989
TU73609 lncRNA downstream 162723 10474770 ~ 10483928 (-) True G62125
TU74041 lncRNA upstream 269527 10926840 ~ 10953744 (-) True G62469
TU74080 lncRNA upstream 385032 11042345 ~ 11074703 (-) True G62504
XR_004577933.1 lncRNA upstream 423218 11080531 ~ 11083012 (-) True LOC117596980
TU74367 lncRNA upstream 614887 11272200 ~ 11360044 (-) False LOC113540328
TU74365 lncRNA upstream 654260 11311573 ~ 11313616 (-) False LOC113538166
XM_034303222.1 mRNA downstream 15631 10601837 ~ 10631020 (-) False tesk1
XM_034303223.1 mRNA downstream 15631 10601837 ~ 10631020 (-) True tesk1
XM_026936780.2 mRNA downstream 44966 10595693 ~ 10601685 (-) False si:dkeyp-75h12.7
XM_034303263.1 mRNA downstream 45022 10595693 ~ 10601629 (-) True si:dkeyp-75h12.7
XM_034303279.1 mRNA downstream 72859 10569552 ~ 10573792 (-) True msmp
XM_034303211.1 mRNA upstream 35944 10693257 ~ 10747646 (-) False poln
XM_034303212.1 mRNA upstream 35944 10693257 ~ 10747646 (-) False poln
XM_026936777.2 mRNA upstream 35944 10693257 ~ 10747646 (-) True poln
XM_034303213.1 mRNA upstream 35945 10693258 ~ 10747646 (-) False poln
XM_026936758.2 mRNA upstream 90459 10747772 ~ 10754568 (-) False haus3
trnan-guu_12 other downstream 151413 10495165 ~ 10495238 (-) True trnan-guu_12
trnan-guu_11 other downstream 154988 10491590 ~ 10491663 (-) True trnan-guu_11
trnan-guu_10 other downstream 156230 10490348 ~ 10490421 (-) True trnan-guu_10
trnan-guu_9 other downstream 159910 10486668 ~ 10486741 (-) True trnan-guu_9
trnan-guu_8 other downstream 161139 10485439 ~ 10485512 (-) True trnan-guu_8
XR_004577925.1 other upstream 36816 10694129 ~ 10747646 (-) False poln
XR_004577926.1 other upstream 48697 10706010 ~ 10747646 (-) False poln
XR_004577924.1 other upstream 119447 10776760 ~ 10863498 (-) False svep1
XR_004577923.1 other upstream 123909 10781222 ~ 10863498 (-) False svep1
TU73964 other upstream 249814 10907127 ~ 10909999 (-) False nedd8

Expression Profile