RNA id: XM_026936772.2


Basic Information

Item Value
RNA id XM_026936772.2
length 4400
RNA type mRNA
GC content 0.40
exon number 11
gene id slc7a8a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10885506 ~ 10905558 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACGGACGGACCGAGACACCGAGGGAGCGCGGCTGCTGCCGCCGGGGAAGAAGCGACACAAGCCGGGAAAGCAGAAGGACAATCATCCGTGGCTCTGAAGAAGGAGATCGGGCTTGTGAGCGCCTGCGGGATTATTGTCGgtaACATCATTGGCTCGGGGATCTTCGTCAGTCCTAAGGGTGTGCTGGAGAATGCTAGCTCCGTGGGGCTAGCACTTATCGTCTGGATCATTACAGGTGTCATCACTGCTATCGGCGCTCTCTGCTATGCTGAACTGGGGGTCACCATCCCTAAGTCTGGTGGTGACTACTCTTATGTCAAGGACATCTTCGGTGGACTGGCAGGGTTCCTGAGATTATGGATTGCTGTCTTGGTGATCTACCCCACCAACCAAGCAGTCATTGCTCTCACTTTCTCCAACTATGTTCTGCAACCTCTCTTCCCCACCTGCTTCCCACCAGAGAACGGCCTTCGCCTACTCGCAGCCCTCTGTCTCTTGCTGCTGACTTGGGTGAACTGTGCGAGCGTGCGCTGGGCCACACGTGTACAGGACGTGTTCACGGCTGGGAAACTGCTGGCCCTCATCCTTATCATCATCATGGGCATTGTACAGATCTGCAAGGGTGACTATTATTGGCTGGAGCCAGTCAATGCCTTTGAGCCGTTTCAGGACTATGATGTCGGTCTGATAGCTCTAGCATTTCTTCAAGGCTCTTTTGCTTATGGAGGTTGGAATTTCCTTAACTATGTGACAGAGGAGCTGGTCGATCCCTATGTGAACCTGCCTCGTGCAATCTTCATCTCCATCCCTCTGGTGActtttgtttatgtgtttgctAACATTGCCTACGTCACTGCCATGAGCCCTCAGGAGCTGCTGGCCTCCAATGCTGTTGCTGTGACGTTTGGTGAGAAGCTGTTGGGAGTGATGTCATGGATCATGCCCATCTCGGTGGCTCTGTCCACCTTTGGGGGGGTCAACGGCTCCCTCTTCACCTCCTCTCGGTTGTTCTTTGCTGGTGCCAGAGAGGGCCATCTCCCCAGCCTGCTAGCTATGATCCATGTGAAGCGCTGCACACCTATTCCTGCTCTACTCTTTACTtgtATCTCGACCCTTCTGATGCTGTGCACTAGTGACATGTACACACTTATCAACTATGTGGGCTTCATCAACTACCTCTTCTATGGTGTGACAGTCGCCGGGCAGATTGTCCTGCGCATCAAACAGCCTGACATGCCACGACCAATCAAAGTCAGCCTAGTGTGGCCAGTGATCTATCTGCTGTTCTGGGCCTTCCTGCTGGTCTTCTCTCTGTACTCTGAACCTGTGGTTTGTGGCATTGGCTTGGCCATTATGCTCACTGGTGTGCCCGTCTACTTCCTGGGCGTCTACTGGGACAACAAGCCCCAGTGCTTCAACACATTTGTGGATAAGATGACGTACCTGGGCCAGAAGTTCTGTGTGGTGGTCTATCCAGCAGAGGACGAGAAACCTGAAGACGGCTGCGGGGAAGAGGGGATAGAGATGAAGGAGGAGTCTGCTCCTCTGTCTGCAGCAGACAGTGCAACACCAAACTCAGCCAGTTGCTGAACACAAGaatgcagtcacacacacagtgcccgACTGATACAGATCCACACTGGTAAAATGGGTGTGAACTCGTAAAGCACACACTAGTAAGCCTTTTTCGATTGCTGCATCTGCCTTTGCACATCTGCAGGGTTGTCATTTTCTAACGGAGTGAGATACACTGAGGTAGAGGTTAGAGGTGAGAGATGTAAAAGTGAGCTTCTGTAAAATAAGGCAAAATAAGATCATAAACCATCAAAACTAAAAATTGTACATAAGACACTGCTATTTTGGTAATGTCTGATTTGTAATACAGAATTAAATCCACACTCGTTGTTGATGTATAAATCCaactaaaattattttaatattcacagTCTAGCATTGTACCTCTCATCCTCTGACCTCAAGTACTcctccaccttttttttttactacagaTGTAGTCAATGTAAATGTACTACAGCtcttcatccacacacacacacacacacacacacacacacacacacacacacacacacacacaaatacacacacacatacaaaacacacactataaatatatatttatatatgccACATCCAGCTCCACAGAGTGTCCGCTTAGTGCAGTATTAGTCTTTCACATTCTACAAAATCATCTTTAGTGTTGTATGAACATGCCAGAGTATTTTGATTCCAATATTTCATATTAGATTCAGCTGCACAATACACTAAGAACCGTTTtttgattttagatttttttgttttaattccaaaatgttgttttttttatccataattatgatgttttgttattattgttattattactttgtgtcattttcagtcaatgcttttattttgttttttatccaATTGATAACTCTGGGATTTTCTTTTCAAGCTTGAGATAGtatctataaaatatatatatttaagaacCACATTTTGTGGCTTAGAGTAGTTTTCTACCAGAGTCTTTGTCTGGTGTGAGTACAATTCTATCGCTTTTAATGGCCTTAATTATAATACTTGGATAATATGCCTGTATTTTGGCAttcatgttatcacttttttttttttttttatcaccactgaacaataatttttttgaagatttttttgaAGATAAAACagtttacaaaaaacaaaaaaaggctcTGAAATTCTATGCTGACTGCTGACTTGCTTAATAGAATTAACCGAATTAACAGCATACATAATTTTActgctgattttcttttatattcacACACCCTGAAGTATAAGTCACAATCTAAACACTCATATGCATGTGTTCGATTGtaaattaaatgaactaaatatgttttaagtaatttcatGTGAGTAAAAAGGATGTATTTTCATGTGAAGTAGTTTATCTTCAGTTTATTTTTCGAAAAAGGAAAATGACAAGAGTAAGGGAGTGCTATATTTTTGTTCTTGACATGATTGTGGAAAAGACAcgaatatataaaaacaaaatagaggACTGTATAAATGAGTACTTGAGTACTAAACATGTATTCAGAGTCAGATAAatcataatattcatattactcTAAAATAATACAGATGTATTATAGGTGTTAATGTAGGTGCAATAACTTGACTAACTTTAACTGACCAAGCTAGCCCTTCTCTTCACCTTCTATGTCACATTATATCTGTGCtgccactgtaaataaaaaatgaaggtATACGCAGTTGACTGTGCTTATATTGTCCATATTTGCTATTGTGAGATGCCATTTGTTTAACAGGGTTTCATGTAGGATTATATTCTCCCATGTCCAAAGTCctacataatatatacattttgctACCCAAAACTCTGTTCAGTCTTACTGTAGCCCGATACTTTTAGTTTTTACAAAGATTTGAATACATCATAGATGTATTCGAGTGATTGAGATAACATGAGACACACTTTTTCAtgatttcacagattttttactttttttaaaaaaaaataaaataatatgacaGAGGTGCAATCATTCAGATGTACTTCCTAACAATAGCAAAAGTGGACAGAAAGGTTCAAAGTctgctgttgtgtgtaaaaatgtcatGATGTTCGTGGTCACAGGGTCTTTGTCTATGTGCCTACGTAGTGATGTCACACTTTTACCTAATTAATACTCTTGAAAAATGATCACCACTAAAATGAGTGCCAGTTGTTCCCCTTAtgtataaatatagtaaatgtgtgtaagtgCTGTATAAACAAGCAATAGAATGTTTAGTGACTTTCAGGACACATCTTAAGTCTcacagtaaaagaaagaaacaccaTTAAAACAACTTTATCCATGCTTATAAATGTGTTTGATTTATAAGTATATTTATAATTCTATGCACATCATTTTGCAAGAGCTTTAGACCTCACTAGATCGTTCATATTTTACGTGATAAACAATAGGAAATCTTAAAATTTTCCGCTGCAGTGCACATCTCATTCACTACAGACACTCGCTGCATATACAGGCTGTTAATTCCCACAGACTTTTGAAGATAGGTCACTGAAAACCATGCAAAATGTTGGTGTAACCCATGACTGAGCTCTTTAGATGTGTCCGTAGAATATGACTGTACCCACCATCAGCAAGACGTGATTGATGTTTGTgatattttaaatgtctttgtcatgttgtttcagtttttctttatgGTTTTGCTTAGATGTTTTTGACATTAAAAGTTTGATAAATTCAGTAAAAATCTAGTCATCCAACAATTACTTCCAGATGATGTTTCTATTGAGCTCGTTTCTTATAGATTTTGTATGTGTTTCAGCTGTGTATTGAAGTCAAATAAATCTGTAcacccaaataaataaa

Function

GO: NA

KEGG:

id description
K13781 SLC7A8, LAT2; solute carrier family 7 (L-type amino acid transporter), member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73906 lncRNA upstream 20645 10864655 ~ 10864861 (+) True G62373
XR_004577939.1 lncRNA upstream 68954 10815750 ~ 10816552 (+) True LOC117596985
TU73717 lncRNA upstream 222099 10657852 ~ 10663407 (+) False c4h4orf48
XR_004577940.1 lncRNA upstream 379029 10499275 ~ 10506477 (+) True LOC117596986
TU73615 lncRNA upstream 388146 10497130 ~ 10497360 (+) True G62131
TU73963 lncRNA downstream 1467 10907025 ~ 10910142 (+) True G62416
XR_004577928.1 lncRNA downstream 114575 11020133 ~ 11022796 (+) True LOC113540371
XR_004577929.1 lncRNA downstream 114581 11020139 ~ 11022796 (+) False LOC113540371
TU74139 lncRNA downstream 271471 11177029 ~ 11193851 (+) True G62549
XR_004577937.1 lncRNA downstream 277212 11182770 ~ 11183734 (+) True LOC117596983
XM_026936814.2 mRNA upstream 110270 10771447 ~ 10775236 (+) True txn
XM_026936788.2 mRNA upstream 115297 10763576 ~ 10770209 (+) True si:dkey-11k2.7
XM_034303269.1 mRNA upstream 115418 10763575 ~ 10770088 (+) False si:dkey-11k2.7
XM_026936790.2 mRNA upstream 125481 10754877 ~ 10760025 (+) False ptgr1
XM_026936791.2 mRNA upstream 125481 10754879 ~ 10760025 (+) True ptgr1
XM_034303268.1 mRNA downstream 5358 10910916 ~ 10917550 (+) True gmpr2
XM_034303255.1 mRNA downstream 12945 10918503 ~ 10939471 (+) True LOC113539892
XM_034303256.1 mRNA downstream 12945 10918503 ~ 10939471 (+) False LOC113539892
XM_034303248.1 mRNA downstream 38621 10944179 ~ 10962559 (+) True LOC117596975
XM_034303252.1 mRNA downstream 58504 10964062 ~ 10988566 (+) True LOC117596976
TU73719 other upstream 222099 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 319782 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 353978 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 354462 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 390036 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 739344 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 1386956 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2512819 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2565211 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2653065 13558623 ~ 13562266 (+) True cited1

Expression Profile