RNA id: XM_034303264.1


Basic Information

Item Value
RNA id XM_034303264.1
length 4390
RNA type mRNA
GC content 0.37
exon number 6
gene id LOC113540334
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10333469 ~ 10344131 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTATGGTTTGACGTAGATGAACGATGTTACTAGCCTAACAGTTTGGTAAACTAATCCCTTATTTCAACATTCATGTTGCATTTTACACAGACACTGAGATTCACTTGAAAACAATGATAAGGAAATGAATAGTAAGTAAAGAGGAAAGCAGCAGTACTACAGCTTTGGACTGCCGTTATCTTTTGGCTATGATTAAGCTTGCCCTGATGAGCAACTGTGAGGACTGGAGACCTCTCTGCTTCTGGAGTTTCAGCCAAAATTCAGTGAACTTGTGAGCTGGATTTTCTCCCTTTAGTTGGTCAGTGAAAATATGGGAAGTCAGATATttatgttttTTCTTGGTTAATCTACAGCCAAGCAAGCTGATCAGCAGCCTTTACTAGATGATACAGATGaagAACCACTCATTGAGAAGATCTCAGTTGTGCTTATGGGACATCATGGAGTTGGGAAGAATACAGTTGGAAATGCTATTCTGAAGAAGAAAGCCTTCAGATTCCAGGATAGCTCTAAGAACTATTACTTGAAGGATGAAAACACAACATTTGACAGACATGTTACTGTAACTCGTGTCCCAGGCTGGTCTGCAGATTTAAACTCTGAAAAGAATAGGCAACTTTGGCAAGTGATTAAAGACAGTGTGCGATCAGTTGATGATGGACCCCATGCTATTATACTGGTTGTTGATAAGAACACTGAACCTGCAGAGACGAcaaaagagaaattaaaacaACTCCTGGGTGATAATGTTTTCCAGCATATTTTAATAACTTCAGTGGATGCAAAAAACATTGTGGTTTATCACAGTGCTATAAAACAAACCATCATTAACAGATGTAAATATCACTTCTTTGTAAGATGCACATGTGGAAAGCAAAATAGAAAGCTGATCGAAACAATTGAGGACTTTATTGTATATAAGGATGACATTCGTTTCTACGCTATGGGAAAGAAGGCACCAAACCTTGATCTCCAGCATCAGGATCTGGCTAACCTTGTAAATGGACTAAAACACAAAATTTCAGCTCTCTCTGACTCCCTGGATTCCAACAtgtatgtaataaaatcaaaaaatgctgaaataaggGACCTAAAACGTCTGCTGAAAGAAAAGGAGGATATGCTGAGAGCCAAGGAGGAGGAGATAGAAAAGTTAAAGTCAAATCAAAATCACACAGAGCTCTCTGTCCTGCACAAAAAGACTGAGCAGCTTGAGCATGCAGCAAAGCGAGCAGAAAAGTTTCAGCGAAAGATGAAAGAGTTTCAAAGAAATATTggtgaaatggaaaaaaaaattgaagaaaaaaataaagagatagaagaactggaaaaagaaaatcaagcaTTGAAAtctcaaaatgaaaataaaaaaagggcaAAGCCATCATCCATGACTGGGCCGAGGCAGAAGGGTACTAATTCAATTGAATTAATCTCAGTGACCTCAGCAGaaaCATTATTGGGCGATGAAGTATTTCAAGCCAGTGAAGTCCACAGAGGTGTGCGATTTCTGAAGAAAAACCGCAAAGCTCATTGAAAGAATTGTGGCGGTGAAGCCCATTGTTGATGAACTGCTTCAGTTTATCGGCCACCATAAATATGAGAAGATTCTACAAGCTCCAACTGAGTATGAGCAAAAGAGACAGCTCTACGACATAATGGATAAAGGCGGAGCAAAATTGCAAATAGAGTTCTACAAATGCCTGTTAAAACATGAGAAATATCTTGTTGAAGACTTAGAAAAGTCaccataaaatacaaaacactgGTAAGCCTTAAGAATGGGAAGGTTCAGTTTCTAAAATAGACATAATTTCTTTTCTGGGAAAAAACTAATGGACAGATGAGATGAACAACTGTATcataatgagaaaatgagaaaattgtggagagaaaaaaatgattgcTATCCAAGCAGATTATCTAATCAGACTGCCTAATCTAACAAACTAAAAGCCTTCAACTCTTGAAACAGTGCAATGCCTTCAAATGTACTGCTAAAACAACTGTGGAGTTTATCAGTATCAAAAAATTCTTCAGGGAATGTTCTTCACTGGGTGAGACACTTACTCAAGAGAATAAGAAATGTTAAAAGTCTCGAAAAATGAAACTGTAAGTGAAAATCGCTACAGGCAAAAAGTCCTGAAAAGCAATAAGCGAATAAAGCCAGATTTCAGGTCTGACAGAGCATCGCCCAAGAAGATACATATCATTTGCTGTTATTTGTAGCTACTGTTGATAGCAAAGTATTTGCAACTATTTTTCCGGAATCAATTCCTGTAACAGTGGGGACAAGGAAGGAGAATTCACCTTGGATTaggatgccagttcatcacTGGGCACCttgcacacattcattcacaccaaggggcaatttagtgtcgCTAATCTGtgtacctgcatgtttttggacattgggaggaaaccagaaaacctggaggaaacccctgcaAACACGGAGAGAACTCTCTGCACACACAATAACCCAGTCAAGATACATTCAAGATACATACTACAGCTTTGATTTGTTAAACATTTGAGAGCCAACCAGCTCCAGCTCCATTAACCTCAGGGAAGTCCTGTAACAGACATGGCTGAATATATCTGAGGAACACCTGGAAAAAAAGTTGGGgtttttgtcattgttgttgtttaaggtttaagttttgttttttttttttaatttattaatgtattgttgaatttatttagttaatGTCTTAATACCTGCATGTGTGTTCTTGTCTTCTTAAACATGATTCGCTTTAATATGTTAgttcaaatgaatgaaaaaaccccactcatttattaaaacactgtTATGAAAGATAAAACATTTAGGAGAAGAATGTTTTACATTCAGTTTTGATATGGCATCAATGGAAGAGAGTTTGGTTATAAGAAGTGTCAAGGCTGCTCAGCCCTCTGTTCAACGATGATGTCTGTGCTCGCTTTGTGTGGCACTTGTCTTGCTTTGTGGCTTTGTGGATCCAGGGTGCAGCATTCATATGTGTGGTGCCAGGTGGCATTGCAGCCGTGTGGGCCACAGAGTGTGTACCAGCGAAAGCTTTCTCTGAGAAAGTGATCAGCCACATCATTGAAATTAGATCACGGCAGATTTTGAGGGACTCTGCTaaccagtctgtctgtctgttttataatttataactgAATATagaatatgttattattattattactctcaTTCTATTATGCAGATGCAATTTTaattgctttaacaaacctaCAAAGCTTACTTAAAATCTACATCAAGAAACTAGCTTGCTAATGTTAGATAGCTAGATCATGTTCTTACTGAGTTGCATATTGTTGGTTTAGTTAACTAGCTTTGTTCAgctaataaatgaatttatggCATTTGACTCGGCAGCACCTCAGCTTTCACAGCCACAACATCTTCaattttgtaattgtaaatcATAACGTCTTGAACATGCCTATGTACAACAAGGTTTACAAGACTTGTATGCCTTCAATTTCTCGCTAGTGCTAGAGCACTGCTTAGAATCATTTAGCCACTCACAGGGCTCCAAGCCATAATGATCTTCTAGAGTCACACCATTTGAAAGTGTTAGTTTGGCCAAATAGCACTACCTGTCTTTTTGTGGTTATCCTTAAGAATATGTGAATAACATTTAGCTAATGTCAGTTagattcctaaataaaattcctGATAGATTCTTCAGTTAGAATATAACCAAGTAGTTGCTAGGCTACTCAGGTctttatgcaaccaggttgtgTATGCATCTCTTTACAAATACCAAAGGAGTGTATATATCCTTCAAAAACAAGTTCTCTCTAAACTCTCGGTTGCATGATTCAGCTGGTTTGCTAAGCCACTGTTGCATCTGTTTACGTTCATTGCAAGGTGCAGTGTATCTCAAacattgttattaaaataaGTGAAGACCTTCAACTAAGTGATAAATACTGTGCAAGAGAATAATACATACCATGACAAAGCtattttaaattctattttcATGCTGGAATTTTCCTTTAAGTTTTGAATATAAGGGCTAAGaaacacttcatttaaaaattataattatctTGTTCTTTGGTCTGTCCTACATCAAAGTTTAGTTGAAGCATCTTATTTTAAAGTTAGATGCAAATGCAATAAAAGATAACTGCCTATGCAGTACACATCTATTTATCATTTCCAGCTGAAGGTATTAGTTACGGTAGACAATCTGTTCTCTCTTCCTGCAGCTTTCAGTGTGAAACTGTTTATCTACCATTTATATAAAGTCCATTGAAAGTGCTTTTGTGCATCTGAGATCAGAGTGACTCAGCAAGTTTATTGCATTTATCACTTTTGCATCAGAATACCagttttatttggttttctctttcacttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577927.1 lncRNA downstream 122237 10202231 ~ 10211232 (-) True LOC113540369
TU73517 lncRNA downstream 253252 10078927 ~ 10080217 (-) False LOC113540372
TU73473 lncRNA downstream 260276 10070406 ~ 10073193 (-) True cxcl19
XR_003404074.2 lncRNA downstream 291690 10041567 ~ 10041779 (-) True LOC113540700
XR_004578135.1 lncRNA downstream 292775 10040482 ~ 10040694 (-) True LOC117597227
TU73581 lncRNA upstream 19881 10364012 ~ 10364892 (-) True G62108
TU73582 lncRNA upstream 24190 10368321 ~ 10370563 (-) True G62109
TU73609 lncRNA upstream 130639 10474770 ~ 10483928 (-) True G62125
XR_004577943.1 lncRNA upstream 153390 10497521 ~ 10499087 (-) True LOC117596989
TU73654 lncRNA upstream 189942 10534073 ~ 10534422 (-) True G62167
XM_034303275.1 mRNA downstream 13269 10308651 ~ 10320200 (-) True LOC117596978
XM_034303829.1 mRNA downstream 96857 10231674 ~ 10236612 (-) True LOC113547269
XM_034303249.1 mRNA downstream 143541 10167917 ~ 10189928 (-) True LOC113538503
XM_034303827.1 mRNA downstream 190040 10111162 ~ 10143429 (-) True LOC117597105
XM_026936742.2 mRNA downstream 226940 10095779 ~ 10106529 (-) True LOC113540311
XM_026936750.2 mRNA upstream 2149 10346280 ~ 10359403 (-) True f13a1b
XM_026936751.2 mRNA upstream 2149 10346280 ~ 10359370 (-) False f13a1b
XM_026936749.2 mRNA upstream 2149 10346280 ~ 10359369 (-) False f13a1b
XM_026936805.2 mRNA upstream 54422 10398553 ~ 10404916 (-) True tex261
XM_026936764.2 mRNA upstream 61981 10406112 ~ 10416565 (-) True shtn2
TU73337 other downstream 295894 10027987 ~ 10037575 (-) False G61900
TU73432 other downstream 528151 9776278 ~ 9805318 (-) True G61972
TU73323 other downstream 804666 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 994724 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 1006038 9314849 ~ 9327431 (-) False LOC113540087
trnan-guu other upstream 130265 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 131492 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 132727 10476858 ~ 10476930 (-) True trnan-guu_2
trnan-guu_3 other upstream 135168 10479299 ~ 10479372 (-) True trnan-guu_3
trnan-guu_4 other upstream 136386 10480517 ~ 10480591 (-) True trnan-guu_4

Expression Profile