RNA id: XR_004577925.1


Basic Information

Item Value
RNA id XR_004577925.1
length 4057
RNA type misc_RNA
GC content 0.47
exon number 28
gene id poln
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10693257 ~ 10747646 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTAAATGCACATTGTGCATTAAAGTACATAATTCTGgcagtgtttgttttaaacaaaattttgtGCATGTTATATATTTGTCCAGTACaaattacttattttatatcaaataaaaataaaagtatgtcAGTGAAAACCTGATCGGCTTCGCTTAAAGCATACAGTCTGAAGGCCTACGCTAACTGAGCAGTACTCtcttctctgtgtttgttttaggaCAGTTAGTGAGGAAGGACAGAAGAGTAGGTGAGATGGAGTGCCACCCCTCTAGCATGCTGACTGCAGGCCCTTTGTCTGCAGCTGCCCAGAGGGTCATGGCTGCACTGAGAGCTCAGTACGCAGGCAGAATAAACAGGAGACCACACATAGCAGACTCATTTGGCAGAGCCTCCAGGCTGTCCCAAAATCAGGGCACCATCAACAAAACTCCGGAACCACACATACATACTAAAATGCTTTATGTGAGCTCCAGCTATCATAGGGAAAGCATAGTAAATTCTCCTCATCCTGACCAGGTAGAGAAGCACAGCTATAACACCAAGCCACAACTTCAtgaggggagagagaggcaATTATTCAGACACTCCCCAGAGATGAAGCTCCCCAGCCAGCCTGACCTCCGGCAGTTGCATAGTAGAGATAACACATTTAATCAATGGGGAGCAGATAAACAATGTGATTGGAGGCCAAGGGATTATGGAGATGATGGCAGTCTGTCAGGATTTAATTCTGGTAATAATATCCCAGGTCCCAGCAGAACCCCTCCAGAGCCAGATCCACAGGGAGAAGAGCTTTTCCCCAGGAATGGCTTTGTTAATAGGGGAAATCCACAGACTGTCATGGGATTACCAGAGACCCGTAGCCAGACCTTCAGTAGTAAGGAAGAAATCCAGCTACTGGCTTGTAGTGAAGAGGATTGTAAAGCAGAGGCAATAACTCACACCCCTCCTGTGAAGAGATGGAGGTTTGGTAATCTGCAATTACCCATAATCACCTGTTCAAAACAGTTTAAGGAAGATGATTGTGGGCAGAAGAGTGAAGTTgggaaaacaaatgaaaaccttGATAAGATGCAGTTTTGGAGCTTtgaagagaaaacagaaataactgAAGAAACGGTATTTGATCAGAATTCAGATGGAGAAATAACAGAGAAGTttgaatttaattcagttttgtttggGGGTGTTGTTAAAGAAAGCAGTTGTGACAAGGTATGTGAAAATGGACAGAATGAAATAGAAGAATACTCAAGATCACTGGAGTACCAGAGTTATTTGAAAGAGACGCCAACATCCAGGAGAGAAAGTCAGAAAATTAGTTCCATCTTGGCCGATTCTTGTCATGATTCAGCTACGAATAAAATACTAACTAATGGAAGCCATCTGCCAGTTCATCACACTTTGGTTTCACTCAGAACAAGTGACTTTGATCAGTACACAGAGGACAAAGAAAAAGCATCAGTGGTGGAGACAGAACCAGCCAAAGTGGAACATGTCTGTCACAATGCTGGCCTGTACGTGCATCAGTCCGATATGAAAGATAATCAGATGGAAACCCGGGAGCGTAGCATAGAGCACATTGCAGCTCCTAAAGTCACAGAAACGCATCACAGCCAACAGACCTTTTCACAGGTAGGTCAGAGGAGTTCTGgagtagagtgtgtgcagaacGTCACCCTTCCAGCCAAGCAGCATGGAAAGTGGGAGCCTCCTCGATCGTCAAAAGGGACTTCTCAAATCACACTGTCGCAGGAGCCATGCGCTAATCAAACCTCAAACATCAGTGGATACACTAAAGTGCAACCTATTCACCAGTTACAGCAGAGCAAAGGTAGAAGGCAATTCCTATATCCACTGAAAAGTAATCAGGAGGAGATGCCAGTACAGACAACTGTCCCTTTGAGAGAATgtaagaaacaagaaaaagtgGAAATCATCTCTGACATCCCTAAAGCTGCCCAACAGAGGTGCTCTGCTTCAGAGGTGAATGAGCAGATACACCCggagagagacagggatggGGACAAGACCTTAGAGACTACCAAACGTACTCTAGCCCTAACCTCTGACCCCCGAGTGTGTGATGCCAGCTGTCTCTCACAGAAAGAGAGGATGTATGTGTTGGAGGAGGCTGCAAGAGCAAGGGCGCTGGTGGTTACGATGGTATATCAGGATGGAACCACACAACTGGACCCTGAGCAGAAATGTCCCCTtgctgtgtgtggagttttggtACTGCTGAAGAAGAGTCTAGATTCACTTGTTCTGGAGGAGACTGGAGATGTTGAGGAGAAGTTGCTGTTTCTGAGACTGGAACAGAGACCTGTCTGGGCTCAGCAAGACCCACACAACCAGGATCTAttcaccagAGAGATACTGTTGAAGATGGTGTGTGGAACTCAAACTTTAGTGTGTTATAAATCTAAAGATTTCCTCCGAACAGCACTCAGGCATTTCAACAAGGAACTGAGCTGGAAACAAGTGGCAGGTTGTCAGGTGTTGGATCCTCAGATTGCTGCCTGGTTACTAGATCCTGCTGATTCTGCTTCCTGCTTTCAGGACCTTTTCAACAAGTACTGTACTCGGACCACCACGCACACCCCTGCACAGGCAGAGCTCAGACACAGGaagGTAACCCATGTGATCTCCAGTCTGTCTCACCTACACAGGGTAATGGTGGAGCTTCGGAATAAGCTGGAGACACAGGGCTTATGGGAGCTCTACTTCTGCATGGAACAGAAAATGATTCCAGTTTTAGCAGCTATGGAGAGCCACAGGATCCATGTGGACAGAGATGCCTTAAAGAAGACATCAGAGATGCTGGGGACTAAGATGAAGCAGTTGGAGCAGAAGGCTCACCAGACTGCTGGTCAGAAGTTCCTGTTGTCCAGCAGTTCTCAGCTTCGACTGATTCTGTTTGAGAAGCTCCGCCTGCATGAACGCTGTGAGAATAAGAAGCTACCCAAAACAATGCTCAAACAGCAGCAGTCTACCTCAGAGGCTGTGCTCTTACAGCTCCAGGACCTGCACCCCCTTCCCAAAATCGTTCTGGAGTACAGGCAGGTTCACAAGATCAAGTCTACATTTCTGGATGGAATTCTATCTTGTATGACAAAGACGTTCATCTCCTCCACATGGAATCAGACGAGTACTGTGAGTGGTCGACTGTCTGccaaacatccaAATTTTCAGGCTCTGCCCAGGCAGCCAGTACAGATCTCAAAGAAGCAGTGTGCCAGAGGGAAGGAGGCAGAGCTGGTAACTGTTCACCCACGTACCATGTTCATACCACAAGAGGGCTGGACTTTCCTTTCTGCAGATTTCTGTCAGGTGGAGTTGCGTCTGTTGGCTCATCTGTCGTCTGACCCCGAGCTCTTGAGAATCTTCCAGAACCCTGAAGCAGACGTTTTTAACATGCTCGCCTCTCAGTGgAAGGGTGTAAGTGAGGACAGTGTAAGTGCAGAGGACAGAGAGCACGCCAAACGCATTGTCTATTCTGTGGTCTATGGAGCTGGAAAGGAGCGGCTGTCTGGTATACTGGGTGTGAGTGCTGAAGAGGCCAGTCATTTTCAGGACAGTTTCCTCCAGAAGTACAAAGAGGTGCAGGCCTTTATCCAGTGCACTGTACAGCACTGCCACAAATAcgGTTACGTAAAGTCCATAATGGGTCGGCGCCGCTCCCTCCCTCATATCCATTCAACAGACTGGGTCATCCGGAACCAGGCAGAAAGACAAGCCGTCAACTTTGTAGTGCAAGGTTCTGCTGCAGACCTCTGTAAAATGGCCATGATACACATCAGCTCACTCGTGGCCTCTTCCACCACTCTCACAGCCAGGCTGCTGGCTCAGATCCATGATGAACTACTCTTTGAGGTGGAGGACTCACAGGTGGAAGACTTTGCAGAATGTATCCGTACTTTGAAACAGTGTTGGTGAAGAAAACAATGGAGTCCCTTCAGCATATCGGTTGTCTCGGAGTCAGTCTAACAGTTCCTCTGAAGGTCTCTGTGTCCACAGGACGATCATGGGGCTCCATGTGTGAAGTCTTTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73670 lncRNA downstream 121769 10572155 ~ 10572360 (-) True G62183
TU73657 lncRNA downstream 155540 10538298 ~ 10538589 (-) False gba2
TU73654 lncRNA downstream 159707 10534073 ~ 10534422 (-) True G62167
XR_004577943.1 lncRNA downstream 195042 10497521 ~ 10499087 (-) True LOC117596989
TU73609 lncRNA downstream 210201 10474770 ~ 10483928 (-) True G62125
TU74041 lncRNA upstream 179194 10926840 ~ 10953744 (-) True G62469
TU74080 lncRNA upstream 294699 11042345 ~ 11074703 (-) True G62504
XR_004577933.1 lncRNA upstream 332885 11080531 ~ 11083012 (-) True LOC117596980
TU74367 lncRNA upstream 524554 11272200 ~ 11360044 (-) False LOC113540328
TU74365 lncRNA upstream 563927 11311573 ~ 11313616 (-) False LOC113538166
XM_026936769.2 mRNA downstream 35988 10646651 ~ 10658141 (-) False nelfa
XM_026936768.2 mRNA downstream 36538 10646651 ~ 10657591 (-) False nelfa
XM_034303246.1 mRNA downstream 36816 10646651 ~ 10657313 (-) True nelfa
XM_026936771.2 mRNA downstream 38395 10646651 ~ 10655734 (-) False nelfa
XM_034303222.1 mRNA downstream 63109 10601837 ~ 10631020 (-) False tesk1
XM_026936758.2 mRNA upstream 126 10747772 ~ 10754568 (-) False haus3
XM_034303224.1 mRNA upstream 126 10747772 ~ 10754568 (-) False haus3
XM_026936759.2 mRNA upstream 126 10747772 ~ 10754568 (-) True haus3
XM_026936738.2 mRNA upstream 27606 10775252 ~ 10863498 (-) False svep1
XM_026936739.2 mRNA upstream 27606 10775252 ~ 10863498 (-) False svep1
trnan-guu_12 other downstream 198891 10495165 ~ 10495238 (-) True trnan-guu_12
trnan-guu_11 other downstream 202466 10491590 ~ 10491663 (-) True trnan-guu_11
trnan-guu_10 other downstream 203708 10490348 ~ 10490421 (-) True trnan-guu_10
trnan-guu_9 other downstream 207388 10486668 ~ 10486741 (-) True trnan-guu_9
trnan-guu_8 other downstream 208617 10485439 ~ 10485512 (-) True trnan-guu_8
XR_004577924.1 other upstream 29114 10776760 ~ 10863498 (-) False svep1
XR_004577923.1 other upstream 33576 10781222 ~ 10863498 (-) False svep1
TU73964 other upstream 159481 10907127 ~ 10909999 (-) False nedd8
TU74341 other upstream 430065 11177711 ~ 11182313 (-) False mrpl52
XR_003404121.1 other upstream 461087 11208733 ~ 11208833 (-) True LOC113540753

Expression Profile