RNA id: XM_026936778.2


Basic Information

Item Value
RNA id XM_026936778.2
length 2734
RNA type mRNA
GC content 0.46
exon number 4
gene id syt4
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11426298 ~ 11432252 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacagatagagagagaaagtgagagagagagagagagagagagagagagagaggggtgtgtgtataGTTCCTCAGTCTCAGCTCAGAAAGCATCTCCACAGGGCGGCTGCTACAAAACCTGTAGCGAAAGAGAAAAATCTCAGAAGTGTTtttgaaaaagaagaaaccaaGGCACAGTTGATCTCGATCTGGCCGTGTTAGAGATTTAACCGGCCGCTTCAGCACCTCGAACAGCGCACACAATGGCTCCTGTAAGCGCGGAAGAAGGGCATGTCGCAGAGGTCCCAATGAGCGTGGCCATAGTAAGCGTCTTTGGTCTTGTCTTCAGTGTTTCTGCCTTCTCTTGGATTTGCTGCCAGCGCAAGACCAACAAGAGCAGCACCAAGACCCCACCATACAAATTTGTCCACATGCTCAAGGGTGTGGACATCTACCCCGAGAGCTTAAATGGCAAGAAAAAATTTGCTGGAGAGAAGCTGCCAGACCCAGTGCAGGGGAAGGCAAGTCCAAGTCCCAGCAGTGGGCGTCCACCACTTCACCTCGACCTGGAAAAACGAGACCTGAATGGGAACTTCACATTTGTACCACCTGTTGCCCATCCCAAAGTGCGAAGCTCTCCAGATTTGGACATCTCTTCCCCACACCCTGGCTTCAAACAGGGGGGATACCAGGAGGAGGAAACCTCAGAGAACAATGTCTCTAGCCAGACGCCCACACCAGCTCTGGACAAGGCCCAGGACAAGGACAGTGGCGTAGGCACACTCTCCTTCTCGCTCGAGTACAACTTTGAAAAGAAGGCTTTTGTTGTGCATATCAAGGAGGCGCATGGCCTGTCTGCCACTGATGAGCAGTCCCTGACCTCTGATCCTTACATCAAGCTCACTCTGCTCCCTGAGAAGAAGCACAAGGTGAAGACGCGGGTGCTCAGGAAGACCCTAGATCCAGCTTTTGATGAGACCTTCAGCTTTTACGGCATTCCATATGCTCGTGTCCCTCAGCTGGCTTTGCACTTTATGGTGCTGAGCTTTGACCGGTTTTCTCGTGATGAGGTCATTGGAGAAACACTCGTTCCATTGGCTGATGTCGACCTTGCCGAGGGGAGGGTCATGATGAGCCGTGACATCATCAAGAGGAATGTGAGGAGGAGTGCAGGAAGAGGAGAGCTACTACTGTCTCTATGTTATCAGTCGACCACCAGCACCCTCACTGTGGTGGTTCTTAAGGCTCGCCACCTGCCCAAGACGGATCACAATGGACCTTCTGACCCCTACGTGAAAGTGAACCTGTACCAGGGCAAGAAACGTGTATGCAAGAAGAAGACCCATGTAAAGAAGTGCACACCAAACCCTGTCTTCAATGAGCTCTTTGTCTTCGATGTGCCTTCAGAGGAGGGCCTGCGGGACACCAGCGTGGAGCTTCTGCTGCTGGATTCTGATAGGACGGCACGCACGCCTGTCATTGGCCGCCTCCTCCTGGGCACTTCCTCCCCAGGCACCGCTGGTGAGCACTGGCGCGAGATCTGTGATCATCCACGGCGGCAGATTGCCAAGTGGCATGCGCTGGCCGAAGACTAGTTCATGATACATGACACATGCTTAAGAACTGTCAGAATACAAAGGAAATGAAGTGGGACTTCAGGGGTTTAGGGGACTTATTACGAGCGATGTCATCTGTTGGCTATGTAATTAAGATGGGGCTTCTTCCAAAGGGGAGGAGCCAACTGTATCCAGCCAATCAATGATTCCAAAGACAATCTGCAACACCCAGTGATGCTTCTCTTCATACTTCATACAATATCTAATTGGTCACCATATTGTGCAGTTCCAAATGTCATGTCTCTATCGCTGTTCGCTgctcaatatcaatatcaatgtacggaaaaaagtgaaaaaaaacataaaacagttACTctgaatatatatgtaaatatatgtggATGAACCTTATATTTTGTAAAGGCCTTTAATTTTATCAAATTTCATTCTCTTTTAACagatttattctcttttttgtaCTCCATTTATTGATTTTTGGTTCAGGGTATTTTGCCTGTGTTTTTGTAAGTTAAAGTGGCCGGTCATATCTCATATTTCAGCTATGTGGAGGTAGCCTAAATTAGGCCAACCTTTCTGAACGATGGCCTGCATGAACTAAAGAAACCTGGTTGTATGAGAGGCTTctgtctatatgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtattcagttcTGATTGGAGAGAGAGCTCTCATTACAGTGAGCACAATGGCAGAATGTAATGTACCTGTACCTTAACATAAAATGTCAAGTTCAGAGAAAGACACTGTGCCTCCTAATTATTTCATTCTTAAAGTTAGCACAATGAAGCTGTTAAGGtaaacatacagtcaggttttttttgtcagaagtTAGCTACAGTAATTGTTTTGAAAATCCAAACACATACAGAtcctttgtttactgtttaactGCCAAACCCATCCATGCTCTGCCTAGTCTAGAAATTAGTACAATGCTAGTGCTACAGAGGAAGCTTTTTGAATTCATAGGAAACATGATCGAAATGATCGATTACTCGTTGGTAGTcgacataattttttttctcctgtttataGAACCTGGTGTGTCATAGACCAGAGCTTCTCCTCTGTGCAGATATGTTACAGAAAGGTGTAAAAATGTGAAGAGAAGCTTGCCAAATAGTAAATAAAGTGTTCTGacttaaaaatca

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19904 SYT4; synaptotagmin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74413 lncRNA downstream 23277 11402269 ~ 11403021 (-) False si:dkey-183c6.7
TU74374 lncRNA downstream 60117 11365255 ~ 11366181 (-) True G62735
TU74393 lncRNA downstream 64869 11321370 ~ 11361429 (-) True G62754
XR_004577938.1 lncRNA downstream 67744 11350697 ~ 11358554 (-) True LOC117596984
TU74382 lncRNA downstream 80339 11312414 ~ 11345959 (-) True G62743
TU74373 lncRNA upstream 8865 11441117 ~ 11471047 (-) True G62734
TU74432 lncRNA upstream 19186 11451438 ~ 11547288 (-) True G62791
XR_004577935.1 lncRNA upstream 27818 11460070 ~ 11463038 (-) False LOC117596982
XR_004577936.1 lncRNA upstream 27818 11460070 ~ 11463038 (-) True LOC117596982
TU74459 lncRNA upstream 125332 11557584 ~ 11607947 (-) False G62813
XM_026936784.2 mRNA downstream 10401 11402027 ~ 11415897 (-) True si:dkey-183c6.7
XM_034303276.1 mRNA downstream 44379 11377829 ~ 11381919 (-) True ccdc166
XM_026933044.2 mRNA downstream 78710 11342706 ~ 11347588 (-) True LOC113538167
XM_034303832.1 mRNA downstream 85115 11320035 ~ 11341183 (-) True LOC117597109
XM_034303259.1 mRNA downstream 115549 11286449 ~ 11310749 (-) False LOC113538166
XM_034303241.1 mRNA upstream 77479 11509731 ~ 11519651 (-) False LOC113540344
XM_034303239.1 mRNA upstream 77479 11509731 ~ 11518925 (-) True LOC113540344
XM_034303240.1 mRNA upstream 77479 11509731 ~ 11518654 (-) False LOC113540344
XM_034303833.1 mRNA upstream 92574 11524826 ~ 11535243 (-) True LOC117597110
XM_026937343.2 mRNA upstream 190633 11622885 ~ 11626845 (-) True rab39bb
XR_003404120.1 other downstream 211876 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 213364 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 217465 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 243985 11177711 ~ 11182313 (-) False mrpl52
TU73964 other downstream 516299 10907127 ~ 10909999 (-) False nedd8
TU74378 other upstream 101512 11533764 ~ 11535013 (-) False LOC117597110
TU74889 other upstream 815022 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 839966 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 840120 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 840120 12272372 ~ 12277669 (-) False LOC113539775

Expression Profile