RNA id: XM_034303269.1


Basic Information

Item Value
RNA id XM_034303269.1
length 3625
RNA type mRNA
GC content 0.40
exon number 8
gene id si:dkey-11k2.7
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10763575 ~ 10770209 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgaaaacataaaataacaagAAGACATAACATCAGGAAAAGCATACAGCCAATCCTTCACAATTCTCCGACCTAATCAAACGCCAAAAGCTTGATAAAATAAGTAGGTCTTCAagtcctttttaaaaatgtccatgcTTGACGAGGATTTTATAGATAACGGTAACACATTCCAGAGTGCAGGAGCTGCAACAGAAAAAGCGCGGTCTCCACTACTCCTCAACCGAGACCGTGGGACAGTTAGGAGCATAGTTTGAGAGGAACGCAGATGACGTTGAGATTGGTAAGAGATTAACATGTCCTTTATATACTCAGGAGCCTGATTGTGCAATGCTTTATTCAGGGATTCACTTATGCCTAGATAAAGtgcattacaataaaccaacTGTGTGGCAATAAAGGCATGCAAAACAGTCTCCAAGTCCTTGTTTGAAAGGATAGGTTTCAGTTTAGACAATTTtcttaactgaaaaaaagatgttttcacAACGCTGTTAACTTGACGATCAAAGCGGATTTCAAAATCGAAAATTACTCCAAGATTCTTCACATAACTATTATTGGACAACCGTCCATAACTTTCAATCAGGTCATTTCCGGGTAGTGTGTTCCCAAACATAATAAACTCAGTCTTATCCTCATttagttgtaaaaaaaattatttgctaGCCATCCCTTTACCTCAGTCAAACACTCATAAAAATTAGCAAAAGATGTACAGCCATCTCATTCCAAAGGAAAATACAGTTGTAGATCATCAGCATACAAGTGATAATTAATATTGTATTGCCTAAAAATTGACCCCAAGGGTAacatatataatgaaaataaagtcgAACTGAGAATTGATCCCTGAGGAACCCCCCAAGTGATAGTCGCAGATGACGAAACATAATTTCCAATTTTAACTGAGCATGTCCTGTCCTACAGATAGGAGGAAAACCACTTAAGGGCTACACCCTTAATCCCAACATAATCTCTAAGGCGTTCTATTAAAATCACATGATCTAAAGTATCGAAGGCTGCACTTAAATCTAACATCATTTAGGCAACACTTTTCCCAGAGTCAATacttaaaaaatatcatttgtaaCCTTTAATAATGTTGATTCTGTGCTGTGTTTGGTCCTAAATCCAGACTGAAAAATATCCATTATGTTGTTTCCAATCAAAAATTCAACAAGTTGATTATGGACAACTTTCTCTAAAATCTTATTCATAAAAGGCAATTTGGTAATAGGcctaaaatttttaaaatcctgtgaATCTAAGTTCATTTTCTTTAAGACTGgttcaataacagcatattctggatttaaataattatgtagCTGTTATTTATTCTATTCTGACGTTCTTTGGGATCTACTCACTGCAGTGCTGAACACGATTGTTTCTTCTGGAGGATCTTAACACTGTGTGGTTTAGTGTTGTGCCCATTCCTGCTCTTGAAGATTCACATTCCAGCAGAGATTCAAATCTAACAGAACTGAGTCTGACATTCCTCCTTCAAACTGGATTACAGTTAGAGCTACACTTTGCAGTAGTGTTGTTACAATACAGTAAATGAATGGGTGATTATCTAACCATTAACTTTTGCAAAAATGCAGAGTAAAATGGGTAtccatctttccttttttttttttcaactcatTTTGTTAAAGCACACTGCCTTTCCTCACAACCACTCTCTCTTTTAGCTTATAATGACCATGTGATAAATACCCACAATgtaagagattttttttggaagagtcattttcaaaaatatcttttcATTTGGATTGAGCTCTTTTAAATTGAACAATTTTCTGTTCTACAAAATcataaatttttaattcatcttcagtaaatgttttatccatgtcagggttatggtggatCCTAAGACTATCCTGGAAGCATTGGATGTAAGGaaagaatacaccctggacagaatacacacatacattcccCCACTTGTTCACACATATGGGCAAATTAGAGTCACCAGTCCATCAACTGGCATGCTATTGGGAggtgttaggaaaccagagagccTGGACACTATTAGTTCTTTAGTAGTTTTTCACGTCCAAGTGAATTAAAAGTTTGAAATTTTAGGGATTCAAAATCCAGATCATTTTACAACATGTGAACTCTTGACACACTGGGTACGACTAATAATCTGCTGAATCACTGTGACCAAGGCTATAAATACACCTTTGTGTAAGTTTTGTGGGAAAGACAAATCTATCAAACTGATAAATGAGCTGAAGTCACTCCTGACTAGCAACATACAATGCCATGTATGTATGCAATGGTTTGTGTTTTGCAGCCATGCAGCTCAACCCTGATCTgatcttttaataaataaatgctgtaagtCAAGCCATCAGAATGTATTGCATGGGcagatattatttttcttcactaAGCCActgtttatatacatattacatatattacatacagcATGCCTTATTTTTCCAACCCCCAGTGCTTGGCGTAAAAATCTGCTGTTGATGGGTGGAGTGCTCGGATATAAAGCATGGTGTTGCAGTGTTTATACAGCAGAGCACTTTAGAAGGAAAGTTTTCACTGCAGCAGAAACATGGTTAAAGCTAAGGTCTGGACACTTCGGAAGCATTTTGTTGGCTTTCCAAAGGAGAGTGACTTTGAGCTTAAAGAGGAGACATTACCTGAGCTTCAAAATGGAGAGGTCCAACTGGAGGCCATCTTCCTCAGCCTTGATCCATATATGAGAGCTGTGAGTTCAACTTTAATGAAAGAAGGTGATGTACAGATTGGAGCTCAGGTTGCAAAGGTACTTCAAAGCCGGAACCCAGCATTTCCTGTGGGCTGTTATGTGGTTGCTCCATGTGGATGGAGGACACACAGTGTGACCAATGGCAAAGCAATTTTTAGCCTTGAAATGACTCGAGTTCTTCCTGATTGGCCCCAAGACGTTCCTCTTTCCTTGGCTGTTGGTGCACTAGGGATGCCTGGTTTGACTGCCCTGTACGGCCTAGAGGAGATTCTGCAGGTGAAGCCAGGTGAAACTGTTCTGGTGAGTGCAGCAGCTGGTGCTGTGGGTACCATGGTGGGACAGATTTGTAAGATTAAAGGCTGTAAAGTGGTGGGTTCTGCTGGGAGTGAGGAAAAAGTGGCCTACCTGAAGGAGCTGGGCTTTGACTACGTTTTCAACTACAAGACCGTAACATCTCTGGATGAGGCACTGAAGCAAGCTTCACCTGAAGGCTATGACTGCTATTTTGAGAATGTTGGAGGTGCTTTCTTTACTGCAGCACTTAGTCAGATGAGGCCTCGAGGACGCATTGCTGTGTGTGGTGCAATATCGCTGTACAACGCCACCACACCTCAGATGTGTCCTTTTCCCCACATGACCATGCTGGCCAAGAGCATTAGGATGGAGGGATTCCAAGTCAGTCAGTGGCCAGAGAAAGATGTGGCATCTGTCAGAAGACTGCTTAAGTGGCTGAAGGAGGCAAGTTAAAACTGAGTGGGCCAAACTGACTGTAGTGTATTAACATAAGAGCTATGAGGGGAAACTTAAGGCCAAAGAAAATGTCACAGTGGGCTTTGAGAAGATGCCTGCTGCCTTCATCCAGATGCTGAGAGGGAC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73717 lncRNA upstream 100168 10657852 ~ 10663407 (+) False c4h4orf48
XR_004577940.1 lncRNA upstream 257098 10499275 ~ 10506477 (+) True LOC117596986
TU73615 lncRNA upstream 266215 10497130 ~ 10497360 (+) True G62131
TU73272 lncRNA upstream 277533 10474768 ~ 10486042 (+) True trnak-cuu_13
TU73244 lncRNA upstream 404611 10357814 ~ 10358964 (+) True G61842
XR_004577939.1 lncRNA downstream 45662 10815750 ~ 10816552 (+) True LOC117596985
TU73906 lncRNA downstream 94567 10864655 ~ 10864861 (+) True G62373
TU73963 lncRNA downstream 136937 10907025 ~ 10910142 (+) True G62416
XR_004577928.1 lncRNA downstream 250045 11020133 ~ 11022796 (+) True LOC113540371
XR_004577929.1 lncRNA downstream 250051 11020139 ~ 11022796 (+) False LOC113540371
XM_026936790.2 mRNA upstream 3550 10754877 ~ 10760025 (+) False ptgr1
XM_026936791.2 mRNA upstream 3550 10754879 ~ 10760025 (+) True ptgr1
XM_026936800.2 mRNA upstream 73923 10679257 ~ 10689652 (+) True nat8l
XM_026936818.2 mRNA upstream 100164 10658050 ~ 10663411 (+) False c4h4orf48
XM_026936819.2 mRNA upstream 100164 10658050 ~ 10663411 (+) False c4h4orf48
XM_026936814.2 mRNA downstream 1359 10771447 ~ 10775236 (+) True txn
XM_026936772.2 mRNA downstream 115418 10885506 ~ 10905558 (+) True slc7a8a
XM_034303268.1 mRNA downstream 140828 10910916 ~ 10917550 (+) True gmpr2
XM_034303255.1 mRNA downstream 148415 10918503 ~ 10939471 (+) True LOC113539892
XM_034303256.1 mRNA downstream 148415 10918503 ~ 10939471 (+) False LOC113539892
TU73719 other upstream 100168 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 197851 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 232047 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 232531 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 268105 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 874814 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 1522426 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2648289 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2700681 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2788535 13558623 ~ 13562266 (+) True cited1

Expression Profile