RNA id: XM_034303271.1


Basic Information

Item Value
RNA id XM_034303271.1
length 1703
RNA type mRNA
GC content 0.41
exon number 10
gene id trmt10b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10046572 ~ 10053214 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGCGACAAAGCTACGCAACAGCAGAGTGTTATCATGTGCGCGAGGAGAAGGATGCAGCTTATTTGAAACGAGTCGTGCTAACTGATGCATCTTGGAAATGAGTGAAACTGTGGAAATAGTTGAGAAACAGAAGTCAAGCTTTGAAGACCGACTTCTAAATGATGAATCTGTGTCTGGCATGATGGAGTTTCTCAGCATTGATGTGGATCTGAGCTCCAGCGCATCAAACAGAGAGGAAACATTATGCTCTAAGAATGTGATGCGAAAACAGCGGAACTGGGAGAGGAGATTGGAGGcaaaaaagagcaagaggaaagaggaaaaacagagaagGAAACAGAACCAACAAGATAAAGATGTTGTGTCTCAGTTTAGTAAACGTGTGACCAAGGCTATCACAAGAGAGCGTCTGGAGGAGGCGAGAGCAGCTGGACCAAGACTGTGTGTGGATCTGAGCATGAGCGACTGCATGTCACACAAAGAAATCAGTCGTCTCGCCAGTCAAATAAGACGTCTCTATGGGTCCAATAAGAAAGCCATGCAGCCGTTTCACCTCTTCCTCACAGACATGAAAGAAGACAGTCTGCTTTATAAAGAATGCATCAGAATGAACGAAGGCTTTCTTAACTACTTGATTGATATCACTGCGGAGAGTTGGATTGATCTCTTTCCTTGTGAggatgtaatttatttaactcCAGATGCGAGTGAAGCTTTAGAGGAAGTAAATGGAGACAAGGTCTACATTCTTGGAGGCCTGGTAGATGAGAGCATTCAAAAGAAACGGAGCTACACCAGGGCAAAAGAGCTCAGCGTGCAGATGGCGAGGCTGCCCATTGATGAGTACATGATGAAAAGACCAAACCCCAAGAATTTTCACTCAAAAATCCTAGCCATCAACCAAGtATTTGAAATCCTGCTGACTTATCGTGACACTGGAAGCTGGAGCAAAGCCCTCAGTGCTGGAGTTCCCACAGGAAAGGGATACATCGTGTCTTCTGAAGTAGAGTTGGATTTACCATTATGACCAATAACACGTATACCAGCACAACAACCTCAGGATGCCaatttaaacagaaatctcaCAGGCCTTCGAGAGAGAATTGAGAAGTGATTCTGCACTGATCtgcTCAGCACTAACCAAGTGTAAAAGCACTGACCAGATTAAGATATTAACACAGTTGTGACTGCTGTTCTTCTGTGAACCCTGTTGTCACTAAGCATGACATCCTTCGGTTTTTGAATTTCTGTCttaaacaatcattttaattatcatAAATGATGGAATAAACTTAGACAATTACTCAATTCAGATGCTATTAGTTTGCTCTTAGAACTGCAGCTTTTCCCCAGGATATAATCTATTTTAATGATTGTTTAATTTATAGTATTTATCTAAAACACACtaatctttccatttttttcagctaTTCATAATGATTTCATGGTAAATGCATTTTCCATATCAGTATgttgttttttggtttcttgCACTGAATCTTTATagccatatttatttataggtaGCCAGTTAGCAAATTACTGTAATGTCTGGAAAGCTGGACAGAAACCATTCCTATTCATGGCCACTAGATGGCGCGCTATACAACTATGTGACTCAGCAGTTTCTTTCCATCACTTATGTTGTCTTACAATATGCAGCAGGCAGAGattaacagaataaaatacatttatagtttt

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404074.2 lncRNA downstream 4793 10041567 ~ 10041779 (-) True LOC113540700
TU73344 lncRNA downstream 4806 10024698 ~ 10041766 (-) True G61900
TU73334 lncRNA downstream 4806 10038976 ~ 10041766 (-) False G61900
TU73338 lncRNA downstream 4806 10038976 ~ 10041766 (-) False G61900
TU73340 lncRNA downstream 4806 10038976 ~ 10041766 (-) False G61900
TU73473 lncRNA upstream 17192 10070406 ~ 10073193 (-) True cxcl19
TU73517 lncRNA upstream 25713 10078927 ~ 10080217 (-) False LOC113540372
XR_004577927.1 lncRNA upstream 149017 10202231 ~ 10211232 (-) True LOC113540369
TU73581 lncRNA upstream 310798 10364012 ~ 10364892 (-) True G62108
TU73582 lncRNA upstream 315107 10368321 ~ 10370563 (-) True G62109
XM_034303217.1 mRNA downstream 22795 9997315 ~ 10023777 (-) False intu
XM_034303216.1 mRNA downstream 22797 9997315 ~ 10023775 (-) False intu
XM_034303215.1 mRNA downstream 25108 9997315 ~ 10021464 (-) False intu
XM_034303214.1 mRNA downstream 25108 9997315 ~ 10021464 (-) True intu
XM_034303262.1 mRNA downstream 53705 9980997 ~ 9992867 (-) False aadat
XM_026936815.2 mRNA upstream 17602 10070816 ~ 10073229 (-) False cxcl19
XM_034303281.1 mRNA upstream 25474 10078688 ~ 10080237 (-) True LOC113540372
XM_026936816.2 mRNA upstream 40533 10093747 ~ 10095116 (-) True LOC113540363
XM_026936742.2 mRNA upstream 42565 10095779 ~ 10106529 (-) True LOC113540311
XM_034303827.1 mRNA upstream 57948 10111162 ~ 10143429 (-) True LOC117597105
TU73337 other downstream 8997 10027987 ~ 10037575 (-) False G61900
TU73432 other downstream 241254 9776278 ~ 9805318 (-) True G61972
TU73323 other downstream 517769 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 707827 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 719141 9314849 ~ 9327431 (-) False LOC113540087
trnan-guu other upstream 421182 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 422409 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 423644 10476858 ~ 10476930 (-) True trnan-guu_2
trnan-guu_3 other upstream 426085 10479299 ~ 10479372 (-) True trnan-guu_3
trnan-guu_4 other upstream 427303 10480517 ~ 10480591 (-) True trnan-guu_4

Expression Profile