RNA id: XM_026936808.2


Basic Information

Item Value
RNA id XM_026936808.2
length 1421
RNA type mRNA
GC content 0.39
exon number 7
gene id c4h20orf27
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10460219 ~ 10474141 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTGCTACCCATAGCGAAAATgcaacattttcctttttctcgGGTCGAGTTTACGTTCTGTTAGTCAACAGCAGTGGTCATTTCCGTCTTCAGAAATCACGATTGAAGGCGTGCAGTTGCAGTTGTGTTCCAAAGACAAAATCAGCCATGTTTTTGAGTTCTCCTTCCTGCACGTTCTTATTCATCAGCAGGGTTATTGTTGGTACATCATCATGACGCTGTGACTGATTCTCTGTcttaacaaacacaaatatggcaACTGCCAAAAAAGGTTCCTCTAAGGCGGGGGGCATTCGCTTTGCTGAAGcaaatgctgctgctgctgctcactCCCATGTGCACTTTGATGAGAAGCTGCACGACTCTGTTGTCATGGTGATTCCTGAGTCTGATGGGAACTTCTTGGTTAAGGTGGGCTTCCTGAAGATTCAACACAGGTATGAAATTGTCTTCACGCTGCCAGAGGTTCCAGGGCTTGGGGATGATGTTTGTCCGGCTCCTGTGCCCAACCCTTACCTTCAGATTAAAGATCTTACTGCAGCCCCTAGCGGAGGTTTAAAGGTGATGTGTGAGTATGTGGCTCACAAGGAGGGTGTGCTGTGTGAGGAGATGCTAATACTCAGTGAAAGCAAAGAGGATGTGTGCCTGAAGGTGAAAGTTCACGCTCGTGTTATGGatCGACATCATGGGACACCTATGTTATTAGAAGGGGTACGATGTGTTGGAGCAGAGCTTGAGTATGACTCAGAGCAAAGTGATTGGCAAGGATTTGACTAATTGGTGACCTGTTCCTCTCAGATATTCTCACTGATAGTGTAAATGttggaataaacacacacacacacacacacacacacacacacacacacacacacactgtatatttacagtactgtgcaaaagtcttaggcaccctgttTAGTAAAaattttgttaatgtttatagATGTTTTATGAGTTCTGCATTACTGaatcagtacaaaaatattttatatttccaaacattacttttccaacaaaaaaattaaatgttatagaagAATGTTTGTATaccagtaaagaaagcaacatattacgtaacagaccacttttcagacaaaaaatataatgaGGACTGCTgtctgtggcagattctccaagatgctcagtaaaacttaccagccaatttccttataaaactgcgcAAAATGTACAATGAGATTactgatgcttttttttctaaagtaaatggttatcacaccaaatattgtctttttttttagtttattactgtttactgctctttatagaatTGTTTTGttaagaaatgtttaatttcatcatttctgaAAGCATATTTGCTTTACAGCAGTTTTTTGCATATACCTAATACTTTAGTACAgtactgtctctgtgtgtgtgtgtgtgtatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73582 lncRNA downstream 89656 10368321 ~ 10370563 (-) True G62109
TU73581 lncRNA downstream 95327 10364012 ~ 10364892 (-) True G62108
XR_004577927.1 lncRNA downstream 248987 10202231 ~ 10211232 (-) True LOC113540369
TU73517 lncRNA downstream 380002 10078927 ~ 10080217 (-) False LOC113540372
TU73473 lncRNA downstream 387026 10070406 ~ 10073193 (-) True cxcl19
TU73609 lncRNA upstream 1121 10474770 ~ 10483928 (-) True G62125
XR_004577943.1 lncRNA upstream 23872 10497521 ~ 10499087 (-) True LOC117596989
TU73654 lncRNA upstream 60424 10534073 ~ 10534422 (-) True G62167
TU73657 lncRNA upstream 64649 10538298 ~ 10538589 (-) False gba2
TU73670 lncRNA upstream 98506 10572155 ~ 10572360 (-) True G62183
XM_026936795.2 mRNA downstream 11742 10430289 ~ 10448477 (-) True vax2
XM_026936764.2 mRNA downstream 43654 10406112 ~ 10416565 (-) True shtn2
XM_026936805.2 mRNA downstream 55303 10398553 ~ 10404916 (-) True tex261
XM_026936751.2 mRNA downstream 100849 10346280 ~ 10359370 (-) False f13a1b
XM_026936746.2 mRNA upstream 64596 10538245 ~ 10562006 (-) True gba2
XM_034303280.1 mRNA upstream 95903 10569552 ~ 10574841 (-) False msmp
XM_034303279.1 mRNA upstream 95903 10569552 ~ 10573792 (-) True msmp
XM_026936780.2 mRNA upstream 122044 10595693 ~ 10601685 (-) False si:dkeyp-75h12.7
XM_034303263.1 mRNA upstream 122044 10595693 ~ 10601629 (-) True si:dkeyp-75h12.7
TU73337 other downstream 422644 10027987 ~ 10037575 (-) False G61900
TU73432 other downstream 654901 9776278 ~ 9805318 (-) True G61972
TU73323 other downstream 931416 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 1121474 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 1132788 9314849 ~ 9327431 (-) False LOC113540087
trnan-guu other upstream 747 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 1974 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 3209 10476858 ~ 10476930 (-) True trnan-guu_2
trnan-guu_3 other upstream 5650 10479299 ~ 10479372 (-) True trnan-guu_3
trnan-guu_4 other upstream 6868 10480517 ~ 10480591 (-) True trnan-guu_4

Expression Profile