Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026936814.2 |
| length | 635 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 5 |
| gene id | txn |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 10771447 ~ 10775236 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0045454 | cell redox homeostasis | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0033158 | obsolete regulation of protein import into nucleus, translocation | biological_process |
| GO:0009314 | response to radiation | biological_process |
| GO:0006662 | glycerol ether metabolic process | biological_process |
| GO:0043388 | positive regulation of DNA binding | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0015035 | protein disulfide oxidoreductase activity | molecular_function |
| id | description |
|---|---|
| K03671 | trxA; thioredoxin 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU73717 | lncRNA | upstream | 108040 | 10657852 ~ 10663407 (+) | False | c4h4orf48 |
| XR_004577940.1 | lncRNA | upstream | 264970 | 10499275 ~ 10506477 (+) | True | LOC117596986 |
| TU73615 | lncRNA | upstream | 274087 | 10497130 ~ 10497360 (+) | True | G62131 |
| TU73272 | lncRNA | upstream | 285405 | 10474768 ~ 10486042 (+) | True | trnak-cuu_13 |
| TU73244 | lncRNA | upstream | 412483 | 10357814 ~ 10358964 (+) | True | G61842 |
| XR_004577939.1 | lncRNA | downstream | 40514 | 10815750 ~ 10816552 (+) | True | LOC117596985 |
| TU73906 | lncRNA | downstream | 89419 | 10864655 ~ 10864861 (+) | True | G62373 |
| TU73963 | lncRNA | downstream | 131789 | 10907025 ~ 10910142 (+) | True | G62416 |
| XR_004577928.1 | lncRNA | downstream | 244897 | 11020133 ~ 11022796 (+) | True | LOC113540371 |
| XR_004577929.1 | lncRNA | downstream | 244903 | 11020139 ~ 11022796 (+) | False | LOC113540371 |
| XM_026936788.2 | mRNA | upstream | 1238 | 10763576 ~ 10770209 (+) | True | si:dkey-11k2.7 |
| XM_034303269.1 | mRNA | upstream | 1359 | 10763575 ~ 10770088 (+) | False | si:dkey-11k2.7 |
| XM_026936790.2 | mRNA | upstream | 11422 | 10754877 ~ 10760025 (+) | False | ptgr1 |
| XM_026936791.2 | mRNA | upstream | 11422 | 10754879 ~ 10760025 (+) | True | ptgr1 |
| XM_026936800.2 | mRNA | upstream | 81795 | 10679257 ~ 10689652 (+) | True | nat8l |
| XM_026936772.2 | mRNA | downstream | 110270 | 10885506 ~ 10905558 (+) | True | slc7a8a |
| XM_034303268.1 | mRNA | downstream | 135680 | 10910916 ~ 10917550 (+) | True | gmpr2 |
| XM_034303255.1 | mRNA | downstream | 143267 | 10918503 ~ 10939471 (+) | True | LOC113539892 |
| XM_034303256.1 | mRNA | downstream | 143267 | 10918503 ~ 10939471 (+) | False | LOC113539892 |
| XM_034303248.1 | mRNA | downstream | 168943 | 10944179 ~ 10962559 (+) | True | LOC117596975 |
| TU73719 | other | upstream | 108040 | 10657357 ~ 10663407 (+) | True | c4h4orf48 |
| trnak-cuu_21 | other | upstream | 205723 | 10565653 ~ 10565724 (+) | True | trnak-cuu_21 |
| trnak-cuu_20 | other | upstream | 239919 | 10531456 ~ 10531528 (+) | True | trnak-cuu_20 |
| trnan-guu_13 | other | upstream | 240403 | 10530971 ~ 10531044 (+) | True | trnan-guu_13 |
| trnak-cuu_19 | other | upstream | 275977 | 10495398 ~ 10495470 (+) | True | trnak-cuu_19 |
| XR_003403980.2 | other | downstream | 869666 | 11644902 ~ 11697295 (+) | False | si:ch211-200p22.4 |
| TU74787 | other | downstream | 1517278 | 12292514 ~ 12295123 (+) | False | si:dkey-112a7.4 |
| TU75687 | other | downstream | 2643141 | 13418377 ~ 13418696 (+) | True | G63903 |
| TU75730 | other | downstream | 2695533 | 13470769 ~ 13475037 (+) | False | LOC113539889 |
| XR_003404009.2 | other | downstream | 2783387 | 13558623 ~ 13562266 (+) | True | cited1 |
