RNA id: XM_026936822.2


Basic Information

Item Value
RNA id XM_026936822.2
length 1699
RNA type mRNA
GC content 0.45
exon number 15
gene id enosf1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21741189 ~ 21748713 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGCGGGATATGAGGTGCAAGTTCACTTGCTTCCTCATTGCAGTTAAAACTCTTGACAAAACAGCGAAATGTTGAAAGCTGAAATTACCAAACTGACAGTAAGTGATGTGAGGTTTCCCACGTCTTTGGAGCAGCATGGATCCGACGCCATGCACACCGACCCGGACTACTCTGTAGCTTACGTTGTGCTCGACACAGACACTAGTCTGAAGGGATATGGTTTGACCTTCACGGTGGGAAGAGGCACTGAAATCGttgtgtgtgcaGTAGAGGCCTTGTCATCTTTGGTGATTGGAAAAACACTGGAGGAGATAGTGATTGACTTCAGAGGATTCTACAGACTCCTGACAAATGATGGGCAAATGAGATGGATTGGTCCAGAGAAGGGGGTCATCCAGCTGGCAACGGCCGCCATCCTCAATGCTATCTGGGATATGTGGGCGCGTGCGGAGGGCAAGCCTCTCTGGAAGCTCCTTGTGGACATGgACCCAAGGCAGCTCATCCGCTGTATAGATTTCACTTACATCACTGATGAGCTCACTGAACAGGAAGCATTAGATATCCTGGAAAAAGCCAACAAGGGAAAGCAGGAGAGAGAGGACCAGATGCGGAAGGAAGGATATCCAGCCTACACTACATCCTGTGCCTGGCTAGGATATTCAGATGAACAGctcacacagctgtgttcTGCTGCTCTAGATGAAGGATGGACCAGGTTTAAAGTGAAGGTAGGGGCGGACTTGCAGGATGACATTCGCAGATGCAGGCTCATTCGAAACATGATCGGCCCAGAAAACACGCTGATGATTGACGCCAACCAACGATGGGATGTCAGTGAGGCCATTTCTTGGGTAAGCACACTAGCAGAGTTCCGTCCACTGTGGATTGAAGAACCCACCTCTCCTGATGACATCCTTGGACATGCTGCCATCTCAAAGGCTCTTGCACCTTTGGGTATTGGAGTTGCCACAGGAGAACAGTGCCATAACAGGGTGATGTTTAAGCAGTTTCTGCAAGCCTCTGCTCTACAGTTTGTTCAGATTGACAGCTGTAGGGTGGGCAGCGTCAACGAAAACCTTGCCATCATATTAATGGCTGCTAAGTTTAAAGTTCCGGTATGTCCTCATGCTGGCGGAGTGGGACTTTGCGAGCTTGTTCATCATCTCATTCTGTTTGACTATATCTCAGTGTCAGCCAGCTTGGACAACAGGATGTGTGAATATGTGGACCATCTTCATGAGCATTTCAAAAGTCCTACCGTAATCAGAAATGCACACTACATTCCTCCTAAGGATCCTGGATTCTCATGCGAGATGTTGGAGTCATCGGTGCAGAAACATCAGTTTCCTCGTGGAGAGGTGTGGAGACGCATTTTGGGGCAGAAACACTCACCAATAATCTGAGTAACTGCTGATTAACATAACACCAAATACCAAACTGCAAATCTTTCATTTTACCAAATCTTTTATCTCAGTAAGCAAAGAAATGACTGTTTTCAAAGAACTAAATACTGTACAAGTTAATAGTTTTTGATAGAAATGAAATTTTGTTTGATACTTTCTATctgttaattatataattaatgcaGCAATAAGGGACATTGCAGTTATAACTTGTGAAGGATTTGCACTTTAACATGTGCCACTTATTTCTACTTGTGAATTTGTCACAAATTAAACTGAACTCTAATCCTGTTTA

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K18334 fucD; L-fuconate dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81294 lncRNA upstream 253701 21486974 ~ 21487488 (+) True G68523
TU81189 lncRNA upstream 419783 21321145 ~ 21321406 (+) False plag1
TU81190 lncRNA upstream 424674 21316255 ~ 21316515 (+) True G68435
TU80993 lncRNA upstream 506931 21234025 ~ 21234258 (+) True G68313
TU80981 lncRNA upstream 531865 21205745 ~ 21209324 (+) True G68304
TU81415 lncRNA downstream 5395 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA downstream 5395 21754108 ~ 21762229 (+) False LOC113540377
TU81502 lncRNA downstream 166093 21914806 ~ 21917776 (+) True G68687
TU81775 lncRNA downstream 495875 22244588 ~ 22244825 (+) True G68947
TU81789 lncRNA downstream 634381 22383094 ~ 22387745 (+) True G68955
XM_026935991.2 mRNA upstream 101032 21629077 ~ 21640157 (+) False mettl4
XM_034303841.1 mRNA upstream 189379 21536003 ~ 21551810 (+) True LOC113540483
XM_026936686.2 mRNA upstream 205556 21496955 ~ 21535633 (+) False myom1b
XM_026936685.2 mRNA upstream 211063 21496953 ~ 21530126 (+) False myom1b
XM_034303777.1 mRNA downstream 5367 21754080 ~ 21762301 (+) False LOC113540377
XM_026936530.2 mRNA downstream 18339 21767052 ~ 21776821 (+) True LOC113540212
XM_026936150.2 mRNA downstream 38477 21787190 ~ 21793201 (+) True LOC113539992
XM_026936379.2 mRNA downstream 59011 21807724 ~ 21828839 (+) True mrc1a
XM_026936380.2 mRNA downstream 59012 21807725 ~ 21828838 (+) False mrc1a
XR_004577949.1 other upstream 101299 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other upstream 101299 21629076 ~ 21639890 (+) False mettl4
XR_003404073.2 other upstream 413769 21327346 ~ 21327420 (+) True LOC113540699
TU80896 other upstream 707436 21020258 ~ 21033753 (+) True G68232
trnaa-cgc other upstream 1388704 20352414 ~ 20352485 (+) True trnaa-cgc
XR_004578015.1 other downstream 3703 21752416 ~ 21762301 (+) False LOC113540377
XR_004578017.1 other downstream 5305 21754018 ~ 21762301 (+) False LOC113540377
XR_003404030.2 other downstream 5367 21754080 ~ 21762301 (+) True LOC113540377
XR_004578016.1 other downstream 8068 21756781 ~ 21762301 (+) False LOC113540377
XR_004578018.1 other downstream 9135 21757848 ~ 21762301 (+) False LOC113540377

Expression Profile