RNA id: XM_026936825.2


Basic Information

Item Value
RNA id XM_026936825.2
length 3669
RNA type mRNA
GC content 0.52
exon number 23
gene id dhx9
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31596514 ~ 31610197 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGTGGCTGAGATGGAAGTGTTGATGGTTGGAAGTCTGGCAGAAAAACATACCTACTCAAGATGTGGACTCTCTCTTATTCGTGAAATGGTGTTCAGTTGATAGGCAGAGGAGCTTCATTGCTGAAATGACTATCTTTGTGAAACAGCTGCGTAGAAATATTTTTGCTCGTGAGCATGGCTCCAATAAAAAGCTGGCAGCCCAGTCGTGCGCTCTCTCCCTGGTCCGTCAGCTGTACCATCTAGGTGTCATTGAGGCTTTTACAGGACAGaccaaaaagaaagaaggagagacgTTGGACGTGTATAATGTGAATGTTAGCGATGAGCTGAAGCATCAGCTACGGAGCGTCATCCAAGAGTTCGGCATCCAGATTCCTCCACCTgatCCTAGTGGTCCGGTGTCTCTGGTCCAGGGGAAGTTGGCCCAGTTCGAGCCGTCGCAGAAGCAGAGTACAGGAGGTGTGGTGCAGTGGTCTCCTCCTCAGGTCAACTGGAACCCTTGGACCAGCAGCAACATTGATGAGGGACCTCTGGCTTTTTGCACCCCagagcagatcagctcagaccTGCAGAGTGAGCTCCACTACCAAATAGATCATGACACCAACCTGCAGGAGAGGCTGCGTGAGCGAGAGCAGCTGCCTGTCAAAAAGTTTGAGGAGGAGATCATGCACACCATCAACAGCAATCCGGTAGTGATCATCCGCGGGGCTACAGGCTGCGGGAAGACCACTCAGGTGCCGCAGTACATCCTGGACCAGTACATTCGCGGAGGAAGAGCCTCAGAGTGCAACATTGTCGTCACTCAGCCTCGGCGAATCAGCGCCGTGTCAGTGGCTGAGCGTGTGGCGTACGAGAGAGGTGAGGATCTGGGGAAGAGCTGCGGGTACAGCGTGCGCTTCGAGTCCGTCCTGCCCAGACCGCACGCCAGCGTCCTCTTCTGCACCGTCGGGGTTCTCCTGAGGAAGCTGGAAGCTGGAATCCGAGGAATCAGCCACGTGATCGTGGATGAAATCCATGAGCGAGACATTAACACCGATTTCCTGATGGTGGTGTTACGAGACGTGATCCACGCCTTCCCTGACGTCCGCGTGGTCCTTATGTCCGCCACCATCGACACGACCATGTTCAGAGAATACTTCTTCAGCTGTCCCATCATAGAAGTGTTTGGACGCACGTACCCAGTGCAGCAGTATTTCCTGGAGGACTGCATTCAGATGACACAGTTTGTTCCACCGCCGTCAGAtaagaagagaaaagacaaagaTGAAGAAGGTGGTGAGGAGGAGGTGAACTGTAACTTGGTGTGTGGACCCGAGTACGGTCCGGAGACCAAACGCTCCATGGCCCAAATGAACGAGAAGGAAACTCCGTTTGAGTTGATCGAGGCTCTGTTGAAGTACGTCGAAACGCTGCAAGTGGCCGGGGCCGTGCTCGTCTTCCTGCCGGGCTGGAATCTCATCTATTCCATGCAGAAACACTTGGAGATGAACGCACATTTCGGTAGCCATCGTTACCGGATCCTGCCTCTCCACTCTCAGATCCCCAGAGAGGAGCAGAGGCTGGTGTTTGAGCCCGTACCTGAAGGAGTGactaagGTAATTCTATCGACAAATATTGCCGAGACCAGCATTACAATCAACGACGTGGTCTATGTCATTGACTCCTGCAAGCAGAAGGTGAAACTCTTTACTGCCCATAACAACATGACCAACTACGCCACCGTGTGGGCGTCCAAGACCAACCTGGAGCAGAGAAAGGGCCGAGCCGGACGCGTCAGGCCAGGCTTCTGCTTCCACCTGTGCAGCAAAGCACGCTTTGAGAAATTGGAGACCCACATGACTCCAGAGATCTTTCGCACGCCGCTGCATGAGGTGGCGCTCAGCATTAAGCTGCTCAGGCTTGGTGCTATCGGCCATTTCCTGGCCAAAGCAATCGAGCCTCCTCCTCTGGATGCTGTTATTGAAGCTGAACACACTCTCCGAGAGCTTGATGCCCTGGACTCTAATGATGAGCTGACTCCACTGGGACGCATCCTGGCCCGACTGCCCATCGAGCCTCGTCTGGGGAAGATGATGATCATGGGCTGCATCCTAAACGTAGGAGACGCCGCATGCACCATTTCTGCCGCCTCGTGCTTCTCCGAGCCGTTCATCAGCGAGGGCAAGCGTTTAGGGTTTGTGCACAGGAACTTTGCAGGCGCACGGTTCTCTGACCATGTGGCCCTGCTTTCTGTCTTTCAAGCCTGGGATGAAGTCAGGATGGGAGGAGAGGAGGCAGAAGCCAGGTTCTGTGAGCACAAGCGTTTGCATATGTCCACTTTAAGGATGACATGGGAGGCCAAAGTCCAGCTAAAGGAGATTCTGATTAACACTGGGTTTCCTGAAGAGTGCCTGATGAATCAGGTGTTCAACAACGTGGGGCCAGACAATAATCTGGACGTGGTGATCTCCTTGCTCACCTATGGCTGCTACCCCAACGTCTGCTACcacaaagaaaagaggaaaatccTGACCACCGAGGGTCGAAACGCACTCATCCACAAGTCTTCTGTTAACTGCCCTTTCTCCAGTCAAGACCCGAGTTATCCGTCACCTTTCTTCGTCTTTGGGGAGAAGATTCGAACCCGAGCCATTTCAGCCAAAGGGATGACCATGGTCAGCCCTCTCCAGCTCATTTTGTTTGCCGCCAAGAAACTCACTTCTAACGGAGAGGTGGTCGTACTCGATGACTGGATCAACCTGCGTATTGAGCATGAAGTAGCTGGTGGCATTGCCGGCCTGAGAGCTGCGATGGAGGCTCTCGTGGTGGAAGTGACTAAAGACCCAGAGTACATCAGGAGTATTGATCCCGCCAATGAACGCCTGCTGAATGTCATTCGGCTTCTCTCCAGACCCTCCTCTGCAGGACTCAACCTCATGACCAGCAACCCACGTTTTGGAGACGGTCCACGGCCTCCGAAGATGTCCCGGATGGATGGTGGAGATGGAGGGTTCCAGGGTCGGGGAGGATACCGAGGAGGTGGAGGTTacggtggtggaggtggaggttaCAGGGGATCCGGAGGATACAGAGGGTCTGGAGGTTATAGAGGGTCCGGAGGGTTCAGAGGGTCTGGAGGGTACAGGGGTGGAGGTGGATACCGGGGTTCGGGCGGGTATCGGGGTGGAGGTGGATATGGAGGAGGTGAAGGTGGATACAGAGGGGGTGGAGGTGGTTACAGAGGgggtggaggtggtggaggtggttaCAGAGGGGGTGAAGGTGGATACAGAGGGGGTGGAGGTGGTTACGGTGGAGGACGTGGGTTCAACAGAGGTGGATATGGAGGATTCTAGTGAGGGATCTGGTGTTTTAGACTGTGAAGATGTTCATGTCATTTTATCTCCATGTGGAACGTTGCGTTGTAcgattaatttttttgtgttaagAAAAGTTCCCCCAGTCTAGACTAGACAGTAGAAACTATTCTGTTTGGacaattactttaaaaaaatctatgcaTCAGAATAGAGTCTAATATTTACACAGTGATTCTTTCTTTAACAAGTGACCAAGATTTAATTTACTGTAATGTGTTaagtttaatattttgataAACTGCAAAGTGCTTGTGAAATTGGTGTTCGTTCCTCGATTGAAATGTCACAGTAAAGTCTATGAAATAA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578069.1 lncRNA upstream 55592 31544698 ~ 31546795 (+) True LOC117597165
TU88025 lncRNA upstream 69164 31531453 ~ 31533223 (+) True G74309
XR_004578070.1 lncRNA upstream 71191 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA upstream 74317 31527856 ~ 31528070 (+) True G74315
TU87899 lncRNA upstream 246266 31355554 ~ 31356121 (+) True G74199
TU88103 lncRNA downstream 97031 31707228 ~ 31707436 (+) True G74370
TU88120 lncRNA downstream 124459 31734656 ~ 31743095 (+) True G74384
TU88089 lncRNA downstream 159624 31769821 ~ 31775982 (+) False LOC113540067
XR_004578059.1 lncRNA downstream 167924 31778121 ~ 31846428 (+) False LOC113540254
XR_004578058.1 lncRNA downstream 167928 31778125 ~ 31846428 (+) False LOC113540254
XM_034304000.1 mRNA upstream 7700 31587261 ~ 31594687 (+) False LOC113540625
XM_026937209.2 mRNA upstream 7710 31587261 ~ 31594677 (+) True LOC113540625
XM_026937095.2 mRNA upstream 15632 31584100 ~ 31586755 (+) True zp3f.2
XM_034303928.1 mRNA upstream 20847 31566281 ~ 31581540 (+) True ap1g2
XM_026935828.2 mRNA upstream 41680 31548280 ~ 31560707 (+) True prmt5
XM_026936654.2 mRNA downstream 9648 31619845 ~ 31684467 (+) True lamc1
XM_034303858.1 mRNA downstream 79978 31690175 ~ 31706269 (+) True lamc2
XM_034303620.1 mRNA downstream 122415 31732612 ~ 31753667 (+) True smg7
XM_034303622.1 mRNA downstream 122416 31732613 ~ 31753667 (+) False smg7
XM_034304128.1 mRNA downstream 149692 31759889 ~ 31776798 (+) False LOC113540067
TU87898 other upstream 249243 31351261 ~ 31353144 (+) False c4h22orf39
TU87706 other upstream 504499 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 835255 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 835255 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1979350 29619993 ~ 29623037 (+) False asip2b
XR_004578111.1 other downstream 159625 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 335851 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 348825 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 348845 31959042 ~ 32330845 (+) False LOC117597173
LOC117597122 other downstream 350672 31960869 ~ 31965136 (+) True LOC117597122

Expression Profile