RNA id: XM_026936826.2


Basic Information

Item Value
RNA id XM_026936826.2
length 5080
RNA type mRNA
GC content 0.46
exon number 4
gene id si:ch211-212k18.5
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16098883 ~ 16107737 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTTAAATAGAGCTCCACATATGCGGACACACTGAGGATGTGACGGGAGGTCGGTTCTCCTAGAACTTCACTCAGTTAGAAAGGCACATGCGTGAATTGATTACAACGCGAAACCTCGAGGAGACCCGTTGACTCCGGCTGATGACCCCGTCACTCGTCGAGCTCTGGCCGTGAATCATGTCGCGCCGAAAGCAGAAACGACCGCAGCAGCTCGTTAATGCGGATCCGGGGGGCACGCGCCTGGCATCGCAAGATAATCAGCTGGCTGTGAAGTCACCATCAAACTCTCTTGCTTCAGAACCTacctcatcttcctcatcatctcCATCCCCCTCATCTCTCCAAGATTGTCAACCTCCCCTTGCCCCAAGGCCATCACCTGGTGGCCTGCATGCCCCTTCTCTTCCCAATGAAAGTTCCTCTCCTCCACACTGGCCCAGTCATATTGTCCCTTACACCACATCTCTTCCCAATACCCATTCTTCTCTCTCCCCAGATTTTCCACACCCTTCCCTGTCTTCCCAGACTCACTCCCCTCCTCCTGTCCAGCAGAAGGCTTCCCACATTCCTGTACACCAGCCTCATTCCAACATATCCTCTCCTCAGATGGGTATCTCAGCCACAACCAACAGTTCATCCTCcacatcttcatcatcactcAATGCTATTCCACATGCAAGGAGCCCTAATTCCACACAGCAACCCCCTTCCAGTCTACCAGAGGAGGTTCATGTGCCACCTACCCTGGCTGTGCTTTTAGAAGAACTTAGGGTCTTGCAACAGAGGCAGATACACCAAATGCAGATGACTGAGGAAATCTGCAGACAAGTGCTACGTTTGGGTGGAGTAATCACCAACCAAGATACAGCATCTCTGGAAACCTCTCAAAGAACCTCTGAATCTCTCTCACCTTCACTATCCACTTCAGGTCCTTCCCAATCTACAGCCTCTTCCATATCCTCCTCTCTTCCAACATTAATCCCAGAATCTGTTTCAAACCTCAACATCTGTAATACTAATGGGCACAAAGATTCTTATTCCTCTTCGTCATCCACACCATCTTCTTCCGCCTCATCTCTGGTGTCCTCAGGAGCTTCTGTGCTACCTCTTTCTTTGTCACTGGGTATTCCCCGTTACCTCCATGAAAAGTCCTCAAACACATCATTGAGCCAGACAAGTGCTGTTAGTTACCAAACTCCTTCTCTGCTCACCTCTAGCACACAGGAGCAGATGCCACTCAGCTCTGCTGTGGGAACCTCAGCTGGGTCATTGAGCACCTCAACAGGGCGCCAACAACATGTCTGTCGGTTTTGTGGTAAAGTTCTGAGCAGTGACTCCTCCTTACAGATTCATCTGAGATCCCATACAGGTGAAAGGCCATACCAGTGTCCTGTCTGCCTCAGTCGCTTCACTACACGTGGGAATCTTAAGGCCCACTTTCTGCGCCACCGTGAGCAGAACCCAGAGCTGTCACTTTCCCTACTCCCACCTGCTCTGTCAGAGCAGAACCAGTCAGGCTCTGGGCTTGTGGCAGTACAGAGACGCAGGAAGCGCCGTGCAGAAGATGAAGAACCTTTTGCGGTTAAAGGTGGTGTGAGTGTACCAGATGGCTTAGCTCTTGGTTTTTTATCTGGTTCATCTTCTCGCTTGTCTTCTTCCTCTCTGCCACTCCCTCCCAGTGTAGATTTGGCTCTCTTGTCCACTGCCCATTCTCTGTTACAACTCAATCGTGCATCTTCTGCAACAGTGGCATCTGCTTCAGCTAGTATACAGTCTTCTTCTGCATCTACCACCccctcttcatcttcctcttctATAACAAACCAGTTTAAAGGTGCTAAACAACAGAGATTTGATGAAAATACCCCTCCTCACTCCACCATACATCCCACTTCTCCATACTCTCAATTGGCCCACCTCCCCAAGATCCTGTTCCCCTCGGGTCCCTCTCCTCATCACCCTGGCCTGGCCCTCCTGCGGCCTCCTCACCTTCCCTCCCCTCACCCCCAGCTCACTTTTCCCTTTTCCCCTTACCCCAAACCCCAATCTtcatctccctcctcctcctctccatctTCTTCAACTGCTACTTCGGACACCTGCAAGCTCCAGAGACTGGCACAGAAGTTAGAGAAGCAGCCTCCATCAAAACCCTTTAGTGAAGACCAGACTAATGGCATTACTCAAGCTAATGATGTTTCCACCACCACAACCACAAATACTATCTCAGAGTACAGGAGGGAGATGATGACAGCCTTGGGTCTAAATCCTAATCCCAACAGTGATTTGAGCACCCAGAGCATCTCTGGATCAATTCCCTCCCTACCATCCCTGGTGCCTAACCAATGCGGGGTTTGTCTGCGCGTACTTAGTTGCCCCAGGGCACTTCGTCTTCATCAGGCCACTCACCTTGGTGAGCGTCCTTTCCCCTGCAAGCTTTGTGGTCGCTCCTTCTCCACTAAAGGAAGTCTAAGAGCTCATCTAGCCACCCACAGAGCACGTCCACCAAATACACGCACACAGAATTCTTGCCCACTCTGCCAGCGTAAATTCACCAATGCTGTGGTACTACAGCATCACATTCGGATGCATCTAGGGGGGCAGTTGCCACCAGAGGGCAATGGAGATCTGGGAACAGAGGAACAAACTGATCAAATGGGCAGTGTTGTATTGCCAAAGACCATCCAATCTCTTCCTCTTAATATGAGTATGAGTGTTTCTTCTTCTATTGCTAGCACACTTCAGTCAAGCACTGTTTCAAAAACTAGCACATCACCTGATGCAAAACAAGCAGAAGATTCAGATGCATGTGACAAACCAGTTAGTCAAGTAAATCCAATTACTGATCAAGTCTTAGAGAAGCAAGACCCCACTAGCCCATTTACCAGTGATAGCACATCTGCTAACTCCTCTCCTTTAGAAGAAGATCCTGACAATGACGCTAACCCAAGCGGTGTTAGTGATTATAGTCTCAGTGCTCTCAAAGCTCTTCATAATAAGCCTCAAACTTGTCCTGTAGTAAGTAAGACTAGGGAAGATGATGAGAAcattcctctctccctctgtacgAGAACCAGTTCCCAGGATTCTTTGCCCAACAGCAGAGACTTCACAGGACCTTCTCATCTGGTGGTCAGTGAGCCGAAATCCAACCCTCAGTCTGCAGCTCTTGATCTTTCTCCAGCACTCACACCACCCTCCAGCCCATCCCATCAGCCTAAGCCAGAGCTCAGAGGAACACAGAAGGCCATGCCTGTTAATGGAAAGGGCATGGATCCTGagctcagtgaaggaggtgaatCATTGCCCTCAATAGTCACTAATGGAGCACCAGAGGAGGAGAGTGAGAACACAATACCTAGGGATGTTCAAGATTCCAAGAGGAAGGAAGGGGTTATCAAACCCACAGAGATAAATCATGGAAATTGGGTTAAAGATGAAGTTGAAATGGCCCAGCCAGATACTCCAGTGATTCTACCACCGCCTGCTCGTTCTGAGAAGCCCTACAGCTGTATGCACTGTGGCAAAGAGTATGCCAGCCGCAGTGGACTAAAGggaCACATGAAAACCCATAGCGGAGGAATGACCAATGAGCTGAATGCATCAGTTGTTCCACAGTCCGCAGAGGGAAATTATAAAGACACTATGGAGACTAGTCCTCATGCTTCCAGTGGAAACCTGCAAGAAGACAGAGAAAATGGGACGGAAAAGACTTCAGAAAAATTGGCCTTAACAGAGGATTCACTGGCTACTGCTGGTTCAGCAGATGGAGGACAGGAACCTGAGGACAGGTCCTAAAAGAATGTAAAAGAATGCAGAGACATAGTGTTTGTCAGtttttaatcaaacattttTACTATTCTTGTGTTAGATGTAGCTCTTAGATTTGTGATATTGTAGAATAATAGTGATTCTGTTAACATGGTAATATTAGTGCCTTTTTCTGAAGACAAGGAAATATTCAAAGGTTGAAAAAAATGGTGGTATTTGTATATTACAAATTATACAATATGTTGAATTCTGACCTTTTACAATAGATATAATGCCAACATAAGTAAGATTATTTGAAGACAAAAAAGCGTTTGCATACCATATCATCAACACTGGTCAGCTCTGTAGAGATGGACAAAAATGGAATCcaaacttttatttcttttctttaatggATTTCTCTCCCTTCATTGTAACTATAATGCTTCTGTATGAACTGGATGTTACTCTATGTAGCAGCACTGCTCTCAACATGTCTTAAAGTCTTTATTAATGAGGTTTTATTTGAGTAAAGTTACACTGTAAAATTTAGTAAACCAGGTCTTGTAACTTACATATAGTACATCTCGGTATGCCATTATTTTTATTGGATTCATTACTGTATCCCTTGTCCATATTTTACTGAAGCATTGTCCAATATTGTCCAGGTAATGTAGTAGGATGAAAGTTAGGACTAAGTTTTACACACCAGAGCCGCTTCAGTAAGCATGATTGACTTGAGCAACGACGAGAATGATGATTGTTCAGGTACTAAAATATCTAGGCAGAGAGATGACTTGACCTGTATCAGCAAGCACCCTGATTTCATTTACAGGCATTTAGTTTGTTTGCCCAAATGGTCATTTATAGTCTCCCTTAAATTACTCAAGAAAAATGCTGCCCTTTGAACTCTATTTTGCTCACTTAGCTTTTTTACTTTGAGTTCCCCATCACTGttgccttttaaaaaaattttacttCATTGTTTTGAAGGTTAGGAATAAAAGCCGAATGAATGTCATGTCATTCAGATAAATACTTGTGTGATGTgcttttatgtgtgtatgtatgtgtgtgtaaaccttGTAGCAAACGTGCCAAATATTGTACTTGTAATATTGCACACGTGTTAAGAAGAGAAAGGATTCTGTGTTAAAAGTCCTGAATTTTAATTCAGCCCAATTTGGTTGAATTACCAAATGAACAGGAGAATGACTGCCATAACAGTCATTCTTCTGTCCATTCTTTtagaatgtgtgtttgtgttttccagCCTCAGTACTCTGTGTATCTGCCCCAGAGATcttttgtgtactttttttggTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77172 lncRNA upstream 35507 16062088 ~ 16063461 (+) True G65199
TU77152 lncRNA upstream 43823 16019857 ~ 16055145 (+) True G65184
TU77137 lncRNA upstream 97507 16001155 ~ 16001461 (+) True G65170
TU77079 lncRNA upstream 228197 15869198 ~ 15870771 (+) True G65115
XR_004578089.1 lncRNA upstream 542044 15506292 ~ 15556924 (+) True LOC117597190
TU77337 lncRNA downstream 115681 16223418 ~ 16231115 (+) True G65335
TU77409 lncRNA downstream 284392 16392129 ~ 16392363 (+) True G65382
TU77422 lncRNA downstream 322724 16430461 ~ 16430686 (+) True G65395
TU77544 lncRNA downstream 324208 16431945 ~ 16442900 (+) True G65495
TU77609 lncRNA downstream 406900 16514637 ~ 16514841 (+) True G65542
XM_026936832.2 mRNA upstream 6508 16085677 ~ 16092460 (+) True ttc5
XM_026936291.2 mRNA upstream 48340 16040205 ~ 16050628 (+) True htra3b
XM_026936288.2 mRNA upstream 58984 16023195 ~ 16039984 (+) True LOC113540079
XM_034303656.1 mRNA upstream 58984 16023195 ~ 16039984 (+) False LOC113540079
XM_026936290.2 mRNA upstream 62584 16023194 ~ 16036384 (+) False LOC113540079
XM_034303659.1 mRNA downstream 1239 16108976 ~ 16118843 (+) False slc7a7
XM_026936352.2 mRNA downstream 1300 16109037 ~ 16120319 (+) True slc7a7
XM_026936351.2 mRNA downstream 1301 16109038 ~ 16120319 (+) False slc7a7
XM_026936354.2 mRNA downstream 17279 16125016 ~ 16129309 (+) True casp23
XM_026937082.2 mRNA downstream 27627 16135364 ~ 16139870 (+) True LOC113540526
XR_003403994.2 other upstream 58984 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1440032 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 1829628 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2379514 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 2536702 13558623 ~ 13562266 (+) True cited1
XR_004578074.1 other downstream 202476 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 260219 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 652782 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 653012 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 653244 16760981 ~ 16761107 (+) True LOC113540745

Expression Profile