RNA id: XM_026936836.2


Basic Information

Item Value
RNA id XM_026936836.2
length 4795
RNA type mRNA
GC content 0.45
exon number 5
gene id tnfsf10l
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12099805 ~ 12122603 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCGCCCTGCCTCCCTTCGCTCTCCAAGAAACCCGGAGAAAGTCCCAGCCTGGTCCTCCTCCACCACACACCGAGCTCAATGAGCGCCGAGCTTGTCCGCACACACGCCTAGTTTCGCCCGGTCGTCACTCGAGCCCAGGAATGCCATGGCCACTCAGCCCAACCAGGACTACTTCCGCTCGGTCAGCAGCGAGTCCACTACCTACATGATGGTGCCTGCGAGCGGCCGCAGAGAGTCTCCGTCCAAGCTGTGGCTCGCCATGGTGGTGattgtggtggtggtgctgcAGATCGCCTCCACCACCGGACTCTTCCTCTACCTAAACATGTCCCTGTCCCAGGTGAAGAACCAAGGCGTAACAGAAGAGCTGCGATGTCTGGGATTGCTCAATGCCCTGGATAAAAACCGGGATATTCCCGAGGACCTGGCCCAGCTCTTAGGAGAATCCTGCATCAAACTGGCTGAAGGCATCAAGGCCTACATCTCTAAGGTAACAGAGAATATCATCTCCAGACAGACATTACAAGAAGCGAGAACCATACCACATAGTTACAACACTACAGGGGTAAAGTTTGTGACACAGAGACCTTCAGCCCACCTTACACTCAGCAGCGTACAAGGTGCCACCCCTCAGTATCCGAGTCCGCAGGCGGACTTGCACCAGTCATGCCGCCACCCCGTGCGCTCCTGGGCCAATCAGAGCTTCGGCGCCCACCTGCACAACATGACACTGGCCAATGGGCGTCTCCGCGTGCCTCAGGATGGCCGCTACTACCTGTATGCGCAGGTCTACTTCCGCTACCCGTCACCCAGCGAGGGCGAGCAGAAGGGCACCAGCCACCAGCTGGTTCAGTGCATCTACAAGAAAACATCATACCTGAGACCCATCCAGCTGCTGAAGGGTGTAGGCACCAAGTGCTGGGCACCTGACGCTGAATACGCCCTGCACTCCGTCTACCAGGGAGGTCTGTTCGAGCTGCGCGCTGGCGACGAGGTGTTCGTGTCCGTCTCCTCCCCCTCAATGGTGCACGCTGAGGACTCCTCCAGCTACTTCGGAGCTTTCCGGCTGGACCTGTGAGGGCGGATCAGAGAGACTGCGCCAAGGTTACATTACCCAAGAGGCACTGGGAGGTTTTCGTTGTCTCTATGTGGTCCGAGGAGACAGCTCAGACattgcattgttttattttcttttaatagaatgagattttttttatatatgtgaaGGAAGTGGTTCAGACAATTGgactcccttttttttttaaggcggaagaatgtatgtatatttttaaaagcacatcAAAGATGTGGATCTTGGAAACGGTAGCAAAAAGGACAGCAGGATTGCCAGAACTTTGTGAGGCTTCATCTGTGCCAATCATGTGCATGTTTGATGTATGAGAAGAAAAACTGAGCTTTCGCCTCAGGCCACTGGGCATCGGATATAAtgcatttttcaaatatattcagATGCAAGCAGAGAAGAGTGTGCCAGGGGAAAGAGGAGAGGTGTATGCTGTGCAGATGTAAGAATTCTCTGTGGCCAGTCCAACCAGTGGAGCAGCATGCAATCACAGATAGAGACCAGATACCACCACCTagactcactctctctctctctatctctctctctctttcacacaaacacaaacacacacacacacacacacacacagagacaatgCAGAATGCACTTGCTTAACCCAGTAAGCCAGAGATGTGGGTACAAGAGATTTGTTGCTCCTTTCATTGAGTAGTCAGACTCAGTAAATCAAAGGCACCGACATGCTTACTTTCAAATACACATAAATCATATACTCCCACTTATGTCCTGCTTTCTAAAAGCAGACACGCCTCAGtcacccaaacacaaacacgccCTCATTCAACAAGAACGCAGTCCACTCAGCTCGGAcatctgtgatttaaaaaagagtGTATGAAAGGTTAAACAAACAGGGTGCCATACAGTTTAAATGTCACACCCGTGGCCTTTTAATGCTTTGTTTTCTCTAAAACAACATTCACATGATcacaaacattttcagtggaatgACATGTATgtaacctttctttctttctctctctctctctccttctcttctcagttgtgtgtgtatgtatatatacagtacatggtGGCTATTTAAGTTTTCAGCATGCCTCATATATTTGGAGTGAATAACGCAGGAGATGTGACCTCAACTTCAACCTACTGAGGTTCTGGACAAGCAAATGGTAACTGCAAATGAGAAGAAAAATCAGCAGGCCAACGTCTCTGCCAATACATATCATTTGATGGACAACAGACTAAGGGTGAGgcaataatgtgtaatataaatGGCCAGATTCTTGAGAAAAGGCCAAGTTGGActtcagtgtaattttttttttcttcctgactGGACTCCAGCCTGAAGTTTCTGATAATGCCACTATTCTCAAGGCCTAAAAAACCAACTGCTgccaatacacaatacacacaggaGTGAAATGCACAGCCCAAGCACTTTCTGTTTCCTTTCCCAAGGACTTGGCTGTGAGCCACAATAGACGTTATAAATCATCATCTCCATCTGGGACGACATCTTGGAAGGAGTAAATGCATCAAGGAGACATATTTTGCAACAGGCGTAATCGATTCGAGCGAGCATGAATGCGCAATATCAGTCATTGTAAATGCAAATGCCGAAGTGCCTTTCAGTGCTGCATTGATTTGAATGTGTTAGCGTGCGAGGCTATTGGACTTGGTCTGCACAATAAGTATAACAGAGGTTATGGCAGGGTGTTACAAGTGATTTGGCAGAGTCtgagcaacaaaaaaaagactaaacagAATCAAAAGTGTGTTATGATTCATATTACTAGCTCAAGCCTCAACTTTTAGGCTAGGATTTATGCTCAATTTGCTCTGTGTAAACTACAACTTGTTTCCAAAATCTGTTATCTCTAGCACAGCTACAGCTGAAAGCTGGCACGCATGTCCGTTCCTCGTTTGTGTGAAAGAATATAACTCTCCAtaccagcaggtggcagtagtCTGTCTTCATAATCAAAGACTCACCGGTTTGGTCTCACATCTCACACTACCGCAGTAAATAGTATGTCATTATCATACACCATCTACTGAGCAGGTATCCTGGCTTACTACATTAGTATACgatttagtacagtagtatgcagaGGTGCCGACGTCTATAGTTTTGCCTTAATATTAACAAGTTTTGACTCCTTGCTGTGACAAAACAGGAGATACATCAaaacttttgttgttttaaGCTAAAGCAGTAGTCAAATAActctcaaacacaaataaactacATGCAGCAtaaaaagccaattcactgaaggggaaaggacgcagcCATGAAAGACACGCAATCTTTATCTGGATGAattttgacctgtgaattcacaaacTGTGGTTTTGtggccaatagaaaacaagatgGTGGAGCTATGTTCTCTGATGGGTAAAAGTGCACGgtgctgtttattatttatgctgTTAGCATGGAGCCATTTCTTCATTCAACatatgctatatggccaaaagtatgtggacacctgaccatcacacctctatgtgttccttccccaaactgttgtaacaaagttggaagcacgtaattgtctagaatgtctttatatgctgtagcgttatgatttcccttcactggaactaagagacccaaacctgttcccgCATGactgtccctgtgcacaaagcgagctccatgatgACATGGTTTATCGAGGTTGATGTGAAAGatctcgagtgtcctgcacagagccctgacctcaaccccactgaacacctttgggatggaCTGGAatgccaactccatattaatgcccatggttttggaaagggatgttctgtttgtgatggtgaggtgtcaacatacttttggccttatagtgtatgctaggatttttgtggtaaaattaaGTTCTTTCTCTCTACCTGCTAGGACTTTGTTGCTTGGTGTGTACCTGAACAAACTAATCTAGCTAGacacttattttttttgtatgcgCTGTCTTGTGATTGTAGTTTGCTTGTCACTTCTTTTCTCCTGCACAGAATACTTTTTCCATGCCACCAATTCAACTGGTGTTGATGAGAACCAACAGTACGGAACAAGCCACATAAAAGCTATGAGAGTTAGCCACTCACACATAATGTCCTCGAACTACCAGCAGTCAGCTTGCTGTGTCAGGGTCCTTACCAGAAACAGTCACGTCTGGTTGCACAGAAGCCCAACAGGGCCAAATGTTTGCCCAAGAGTAACCCCACACCAATCCAAAGCACATGCAACTGTGTGAGGGTGAGCAATTCAGAATTTCACTATGGAATACCGGctaaacacacaaactccactacaaacaagcaaacactacactctgacccTGATattgagtgttagtgagtggcAGGTAACAGGTCACCATGGACAGGCTAAAACAGTTACACTCTGCAGAATCCCAGCGGCTTTAAACAGATTCCAGACGGGATCGCTTTCTCGATAGACAGCGAGTAACCAAATGTGAAAACGGTGGAAGAAACGtgtcttaaagtaaatatgtgtgtgagtgtgagtgtgagtgtgtgtgtgtgagagtgtgtgagtatgagtgtgtttgtgtcttggAGATGATTGTACAACATAGTGGATGCCAATTCATAAAATGCCCAGATCTGAAATATTAATGAACTGTTTGAGTTTTATTCGAGACCAGACTGTGTTGCggtgaagttttttttgaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74720 lncRNA upstream 95582 12003990 ~ 12004223 (+) True G63061
TU74638 lncRNA upstream 162046 11934829 ~ 11937759 (+) True G62983
TU74622 lncRNA upstream 186699 11912850 ~ 11913106 (+) True G62967
TU74587 lncRNA upstream 236122 11862633 ~ 11863683 (+) True G62932
TU74270 lncRNA upstream 424110 11675313 ~ 11675695 (+) True G62654
TU74814 lncRNA downstream 126060 12248663 ~ 12249788 (+) True G63137
TU74788 lncRNA downstream 169911 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU74948 lncRNA downstream 232947 12355550 ~ 12357681 (+) True G63241
TU74949 lncRNA downstream 235229 12357832 ~ 12358248 (+) True G63242
XR_003404040.2 lncRNA downstream 645982 12768585 ~ 12772822 (+) True LOC113540557
XM_026935824.2 mRNA upstream 6752 12086179 ~ 12093053 (+) True si:dkey-171c9.3
XM_026936200.2 mRNA upstream 275657 11818766 ~ 11824148 (+) True gpr185b
XM_026935954.2 mRNA upstream 383066 11707459 ~ 11716739 (+) True zgc:92429
XM_034304101.1 mRNA upstream 394469 11644903 ~ 11705336 (+) True si:ch211-200p22.4
XM_034303321.1 mRNA downstream 75739 12198342 ~ 12206875 (+) True tifa
XM_034303320.1 mRNA downstream 76766 12199369 ~ 12206875 (+) False tifa
XM_026936972.2 mRNA downstream 76848 12199451 ~ 12206875 (+) False tifa
XM_026936132.2 mRNA downstream 169888 12292491 ~ 12295133 (+) True si:dkey-112a7.4
XM_034304074.1 mRNA downstream 170140 12292743 ~ 12295133 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 402510 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 1436398 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1534081 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1568277 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 1568761 10530971 ~ 10531044 (+) True trnan-guu_13
TU74787 other downstream 169911 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1295774 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1348166 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1436020 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 1582973 13705576 ~ 13719454 (+) False gc2

Expression Profile