RNA id: XM_026936838.2


Basic Information

Item Value
RNA id XM_026936838.2
length 5378
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC113540385
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9712583 ~ 9723961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCCGCGCTGGATTGTGGGAGCCGCTTGGCACAAACAGCCATTTTCAGTTTGCGGCTGTCAGTCAGTGTAACTGCCGAGAAGCTTCTGCGCTGAAGTCGTgcgtgttttttgttttaattttattgcaaAACGCCACTGAGGATGGACGGAAGGAAAGCTTTTGGGGGCAGGAAGGAAAGTTTGCTCTTCGTGTGCTGAGAATAAACAGAGGAAAAGCGGAAAAGCCCTACCTGTGAGCGGAGAAGCAGCTGTTTGTGATTGTGAGCAGAGCGGAGCGTTCTCAGGCAATGTCCACTATGGTGTACCCGAGGGAGGAGGCTCTGGAGAGGCTGAGTCAGGATGAGATTGTGTTGAGCACGAAGGCGGTGATGAAGGGGCTGGAGACACTGCGGGGCGAGCACGCTCAGCTCCTCAACTCCCTGCTGGACTGCACTCCACCTCCCGCCGCGCAGGAGAAATCCGGTCTGCTCCGCAAGAGCCTGGAGGCCATTGAGCTGGGCCTGGGGGAGGCGCAGGTGATCATCGCACTGTCTGGTCACTTGAGCGCCGTGGAGTCGGAGAAGCAGAAGCTGCGGGCTCAGGTGCGGCGTCTGTGCCAGGAGAACCAGTGGCTGCGGGACGAGCTGGCCAGCACCCAGCACAAGCTGCAGAAGAGCGAGCAGAATGTGGCCCAGCTcgaggaggagaagaagcaCCTTGAGTTCATGAACCAGATACGCAAGTTCGACGACGACACCACGCCCTCAGAGGATAAACccggagaaaaagaaaaggacaacCTGGACGATCTGTTCCCCAACGACGATGACCATGGACCAGCCCAGCGCAGCGGTGAGGTGGCAGCACAGCAGGGAGGATACGAGATCCCAGCTCGGCTCAGGACGCTGCACAACCTGGTGATCCAGTACGCCTCTCAGGGTAGGTACGAGGTAGCCGTGCCGCTCTGCAAACAAGCTCTGGAGGACCTGGAGAAGACCTCAGGCCACGACCACCCCGACGTCGCCACCATGCTCAACATCCTCGCTCTCGTCTACAGGGATCAGAATAAGTACAAAGAGGCGGCTCACCTGCTGAACGACGCGCTGGCAATCCGTGAGAAGACTCTTGGGAAGGATCACCCCGCCGTGGCCGCCACCCTCAACAACCTGGCCGTGCTGTATGGCAAGAGGGGCAAATACAAGGAAGCTGAACCCCTGTGCAAGAGGGCGCTGGAGATCAGGGAGAAGGTTTTGGGGAAGTACCACCCCGATGTGGCTAAGCAGCTGAATAACCTGGCACTGCTGTGTCAGAACCAGGGAAAGTACGAGGAGGTTGTGTACTACTACAGCCGTGCACTGGAGATCTACGAGAGCAAGCTGGGGGCCGACGACCCCAACGTGGCCAAGACCAAAAACAACCTGGCCACATGCTACCTGAAACAGGGCAAGTTTAAGGACGCTGAGGCGCTGTACAAGGAGATCCTGACCCGTGCCCACGAGAAGCAGTTCGGCTCCGTCAACAATGACAACAAGCCCATATGGATGCATGccgaagagagagaggagagtaaGGGCAAGAAGAAGGACTCTGGTCCCTACGGTGAGTACGGCAGCTGGTACAAGGCCTGCAAAGTGGACAGTCCCACAGTCACTAACACACTGAGGAGCCTGGGGGCGCTGTATCGCCGGCAGGGCAAGCTGGAGGCCGCTGAGACTCTGGAAGAGTGTGCTACAAAGAACCGCAAACAGGGCATAGATGCGATTAACCAGAGTAAAGTGGTGGAGCTGCTGAAGGACGGCGCCTCTAGTGGAGATAAGCGGCACAGCAGAGAGGGGCTGAACGGTTCTGGAGGTCCTCGTGACTCTGAGGGAGACGAGGCCGAGTGGAGTGGGGATGGGAGCGGCTCTCTGCGGCGTAGCGGCTCCTTCGGGAAGATCCGAGATGCTCTGAGACGCAGCAGCGAGATGCTGGTGAAGAAACTGCAGGGCAGCGGCCCACAGGAACCACGCAACCCAGGgaTGAAGAGAGCGAGCTCTTTGAACTTCCTCAACAAGAGTGTAGAGGAGACCTCACAGGATGTAAACAGCGGCCTATCAGAATGTAGAGGACTGAGCACCAGCAACGTGGACCTTTCAAGACGAAGCTCCCTGATTGGTTAGAGAGTGTGGTTGGGGTATTAAAGAGGGCGGAGCAAAGCAGACAGGCTGTTTGCCTTGTGCATTCAAATCAGAACAGcattatgtaatttttattttccaacatTTTTATTAGTCTTTAATTTGACAGCTGGTGTGCTACCAAATAGCTGTGTCTGCTTTGCTTTATTAAACTGCACTGATCAGATTATTAACACACGACAGGTAGATAGAGTTACAGTTCAATGCGCAATGCAGACTGGCATTGCACTGCGCTCAATTCTTTCAGTCCACGGCCAGCCTGTTCTcctgaaaataaaaccacacgGTTAATGCAATACAGCATGCTGCTTACTACACTGGATGTGTGTCTGCATTCAAGGCACTTAATCGCATCTCAGAGACATGGCATGGTTTAAAAAAGTTATACACCATACAAGGAATCATAATGTGTGTAACTGCAAGCATTAACTTTAATTACCTGTGATCAAAATGTTATGTACTTGACTAGAAGCATGGAGGCTGCAAATGTGGCTCCACACACCCAAAAATCACAGTTGATCGAGTGGTACGATCTCGAGTGTTTTGTTATAGATGAACAAAATGTTAGgatggaaaactttttttttatttatttattttaagtaaagTGTCTCTGCTCTGAAATGAACAGAAAGTAGTGTTGTGGTAGAGGTATGGCCTcacttttgccttttttttctgtatatacaGGTTTAACTTATTGAAATTGTCGTTTCCTTCTTTGTAAATACCACACACGGTTTTGTTTACATAGAAGGAAGTAGGTGAATCTCTGTGAAGAACAAATCCTACTACAGAGTAGTGAACTGTTAAAGAAACACTGGGCTTTGTTGCATGTTTAAACTGCTGTGTGATCAGAAGAGCTCTCACTGTAGTTGCTCTTTATGCTGCGAAAGACAAAGTTAATACTGAAACTGGACCCAAGTTGTGTTTTGCTGATTATtttgatgtcattctttaatttctCAGTCCTGGTTACTGTCCAGAATCACATGATAAAGTCAAGAGTTTGTATATAATTGTATGTATAGTTATTTGCAGTTCAGAGTTTAACATCCAGCACCATCATGAGAATGTGAATTTGTGATTGGTTGAATTTATTTGCTCCGAACAATGAGTGAACTCTGATTAGAACAAATCTCCATGCTCACTAATTTACTTGTTCATTTAGCATCCTCCTAAATGGCAATTATTTCTACATGTATGTATGAGCCAAAACAAAGAAGTCCTCCACTGTGGGCTTATGTACTGTATTCTTGTGTTGTGGTTGTCAGGCACACAGCAGTATTATTGTACCTGCTGTGTCACTTGAGCCATTTATTTGACTGAACGGTTTTGCAGTAAGTAGGTGAAATGGAAAttttattaaaggtgcagtttgtagtTTTCTTTCCCtactatattaatataaaatcaaaGATATCTGCGATGCAACGCAAATGTCTATAGCAgacttttatttacatttttctggccctgaaattggCTCAGCCCTCAGCTAAACTTTGCCCCGCCCCCTACGAGGACACAGATGGTGTACATgatgttataccacagtgctgtagaaTTATCGAATCTGAACTTTTTATTACTTTCAATAACACAGTACTATtgggctgtaattcaaatcacaggatcatattaatgcacttgttctaataaattatcgtttctgtagtaacagcttgttcacagggacatgtatagCAGACAATCTGCATAGTCTAAGGCtagtaataaatggattaaaacacgtttaacaaagaacaacatgtaATCATCGATATGGTGTAGCTtactgtgaggagacgtttctttaacatttttggaaggagtctccattgtcagtaggttttcctcaatgggacagtcttcaggacagaggaatcgCATTCCGATTTCTTTGTAACATAATTAGCTGtgtggtggttttttttgtgtgtgtgtgtcttgggtGTTCACATCACCTCAGAGCCAGCAGAGGgcactaaaataaaattacaaactgctcctttaaatacACATCCATCTGTTTGGCTGATTTCGGTTGTGCAGAATGGTGTTGCTGGAAAATGAGAATAGGTAATGAAAGGTAGAAGGGACATTGACTTTGGACTTTTGGTAGGTGAAggtgttaaaaatgaatgtgagGTTGTAGGAGTGTAGGAAGGAAAATGGAAAGACTTTGCGCTGTGATATAAAAACAGACTGTCAGCTGTGGAAACGTTTCATTCACTGTGTCATATCTCCACACATGGATTCTGTATTGTTTTGTAACTGTCTGTGTATCGCTCAGGCAGATAGGTAATCTCTAGTGTAGTGCTCAAGAGTGcttttacactgcaaaaagcttTAACCCCACCCACTCACCATAACAGTCGATTGTATTATGAGCCTGAGATTTATGATTTCCTTTGATTAGCGAGCTGTCTTGGCTGTGTTAGTATAAGGAAGACTAGCTGTGCAACAAGGCTGTGTGCTATTGACCTAATACCATATTCTGATCATGTTACAGCTACACTATCATCAAAACACTAATCCTCGATGATCTTTGATTAaggataaaataattattttactcCATATCAAATCACTACACTAAGCTAGGAACAAATTAgcttcattatttctttttattttaaataaacagaaaccaGCCTTTTTGCATTGTACATTATTAACCTACATTCCTGTTACACATcagttaatcagaataaaacactcctcGTCAcgttagatttattattttaagagaTTCACTCAAATACAATTAGTCTCTAATTAAATCCTTTAGTATTAACTAATTAGCTAAGCTCACATATACTGCAGTCagttatatttaatctgaaaatTGTGAGTATGAATCGTGCAGCCCTAGACCCTAGTTTGCATATCGCAAATGTTAATATTGTAATGACTATTAACAAATGATAGAATGTGCAGCCATGTTGTTCAGTGCAGGCGGATCACAAGGTCTGCTGGGAACTACTGATGTCACAGGTACAAGATGGCTACGTATGCTGAGAACGTCTTTCTTCCTTTATCAGACACACCACAAAACTCACATCAGCTCATCTGCAGTGTGCAGCTTTTCCTACTCTGTAGAACGTGTTTGTGCAGGTTTAATGTGGTTTTTGGGGGAGGGGGGAGGTTACCTGTGAACAGGCCGATCTGATGTAAAATgatcaaaagaaataaaacctcTCACTTTTCAAACCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005871 kinesin complex cellular_component
GO:0003777 microtubule motor activity molecular_function

KEGG:

id description
K10407 KLC; kinesin light chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73000 lncRNA upstream 119840 9578364 ~ 9592743 (+) True G61638
TU72958 lncRNA upstream 256423 9449043 ~ 9456160 (+) True G61600
XR_003404086.1 lncRNA upstream 362869 9349502 ~ 9349714 (+) True LOC113540712
XR_004578143.1 lncRNA upstream 369469 9342902 ~ 9343114 (+) True LOC117597235
XR_004578133.1 lncRNA upstream 370611 9341759 ~ 9341972 (+) True LOC117597225
TU73062 lncRNA downstream 157107 9881068 ~ 9968829 (+) False G61689
TU73068 lncRNA downstream 157107 9881068 ~ 9968900 (+) True G61689
TU73079 lncRNA downstream 190274 9914235 ~ 9918783 (+) True G61696
TU73080 lncRNA downstream 190274 9914235 ~ 9917378 (+) False G61696
TU73126 lncRNA downstream 300624 10024585 ~ 10041759 (+) False LOC113540370
XM_034303599.1 mRNA upstream 4647 9649304 ~ 9707936 (+) True LOC113539871
XM_034303600.1 mRNA upstream 4647 9649304 ~ 9707936 (+) False LOC113539871
XM_026937201.2 mRNA upstream 70673 9627748 ~ 9641910 (+) False sf3b2
XM_026937200.2 mRNA upstream 70673 9627749 ~ 9641910 (+) True sf3b2
XM_026937204.2 mRNA upstream 277979 9428725 ~ 9434604 (+) True pnp5a
XM_026935803.2 mRNA downstream 768 9724729 ~ 9746048 (+) True LOC113539763
XM_026937341.2 mRNA downstream 24487 9748448 ~ 9757655 (+) True LOC113540688
XM_026937131.2 mRNA downstream 34499 9758460 ~ 9774049 (+) False rbm14b
XM_026937133.2 mRNA downstream 34501 9758462 ~ 9774049 (+) False rbm14b
XM_034303963.1 mRNA downstream 34638 9758599 ~ 9774049 (+) False rbm14b
TU72678 other upstream 815854 8894470 ~ 8896729 (+) True G61359
XR_004578049.1 other upstream 988143 8695352 ~ 8724440 (+) True LOC117597156
XR_003402765.2 other upstream 1649744 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 3116022 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 3282006 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578067.1 other downstream 34499 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 83360 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 136933 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 136933 9860894 ~ 9881226 (+) False si:ch211-168d1.3
trnas-gcu other downstream 188436 9912397 ~ 9912478 (+) True trnas-gcu

Expression Profile