RNA id: XM_026936843.2


Basic Information

Item Value
RNA id XM_026936843.2
length 4755
RNA type mRNA
GC content 0.46
exon number 32
gene id phka1a
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16566064 ~ 16584533 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTAGTGGGAAACTCGTATTTACGGTAATTCCGATTGCACTTGAAGGGAGCATAAATGGTTGTAGTATATTTGACAGCTGTGTGGTAGTGGACACGCGATTCCTAGGCTCTAAGTTGGAGGTGTCCAGTCTGTAGATTTAGGAGAAGTCTTCTGAGCTTCATTGCAGGTTTGTAAACTTTATAAGGATGTCGGTGAAACTTAGTGACTGAAGGAGCAACGGAGTGAAGTGAAGGCAAAATGAGGAGTCGCAGTAATTCTGGAGTCAAACTCGACAACTATGCTCGGATAATTCACCAAACTATCCTTCGCCACCAAGATCCAGTGACTGGTCTTCTTCCTGCGAGTGAGGAACAGCCGGATGCCTGGGTCAGGGATAACGTCTACAGCATCATCTCTGTGTGGGCTCTAAGTCTAGCCTACAGGAAGAATGCAGACCGGGACGAGGACAAGGCCAAGGCTTACGAGCTGGAGCAGAGTGTTGTGAAGCTTATGAGAGGCCTACTTCAGTGCATCATGCGGCAGCTGGACAAAGTGGAGAAATTCAAGTACAGCAAGAGCACCATGGACTGTGTCCATGCCAAGTACAACACACGCACTTGTGCCACAGTGGTCGGTGATACTGAGTGGGGCCACTTACAGATGGATGCCACCTCACTCTTCCTGCTCTTTCTAGCACAGATGACTGCCTCGGGTTTGCACATTGTGTACACTCAGGATGAAGTGGATGTGATCCAGAATCTGATGTTTTACATTGAAGCTGCATACAAAGTGGCGGACTACGGAATGTGGGAGCGAGGGGACAAGACTAATCAGGGCATCCCTGAGCTCAACGCCAGCTCCATCGGCATGGCCAAAGCAGCACTGGAGGCACTGGATGAGTTGAATCTGTTTGGGGCTAAAGGAGGGCCCAGCTCAGTGGTCCATGCTCTGCCTGATGACATCCAGCACTGTCAGTCCATTCTTAACTCCATGTTGCCCAGAGCGTCCACATCGAAAGAAGTAGATGCTGGCGTTCTCGCCATTATCTCATATCCAGCCTTCGCTGTGGAGGACATGGAATTAGTCAACATCACCAAAGAGGAAATCATTTCCAAACTACAGGGGCGATATGGTTGCTGTCGGTTTCTCAGAGATGGTCATAAAACCCCTAAGGAGGATCCCAATAGGCTGTATTATGAATCTGCTGAGTTGAAGCTGTTTGAGAACATTGAATGTGAGTGGCCTCTCTTCTGGACCTACCTCATCCTTGATGGCATCTTTCTAAACAACCAAGAGCAGGTGCAGGAATACAGAGAGGCACTGGATGGTATACTAATCAAACAGAAGGATGGGATACGTCTGCTACCCGAACTCTACAGTGTCCCTCCTGATCGGGTAGATGAGGAGTATGAGAATCCTCACTCTGTAGAGAGGATCCCTATGGGCAAGTGCCCTCTAAAGTGGGGCCAGTCACTGTACATTCTGGGAAATCTGTTGGCAGAGGGCTTCCTGGCCCCTGGAGAAATAGACCCACTCAACCGCAGATTCTCCACCATCCCCAAGCCTGATGTGGTTGTCCAAGtgtgcatTCTGGCAGAAAATGATGAGATTAAGGCATTGCTACTGAAGAATGGGATAGAGGTGGATACAGTGGCAGACATCCACCCCATCAGAGTGCAACCTTCTCGAGTTCTTAGTTACATTTACGCCCGACTAGGACGTAATCAGAGGCTGGGGCTGACTGGCAGGCCATATCGCAGGATTGGTGTATTGGGGACCTCCAAGCTCTACATCATCCGCAACACTATCTTCACCTTTACACCTCAGTTCATTGATCACCAGCAGTTTTACTTGGCCCTTGATAACAGGATGATTGTGGAGATGCTACGTACTGATCTTTCCTACTTGTCCTCTCGCTGGAGAATGACAGGCCGGCCTACTGTCACCTTCCCTGTCTCCCAGACCATGCTCACTGAGAACCACACAGACTTGGACCCTGTAGTACTGGCCACTCTGAACAAACTTCAGGATGGCTACTATGGAGGAGCAAGGATACAGACAGGAAAGTTGTCGGAGTTCTTGACCACGTCCTGTTTTGCTCATCTGAGCTTCTTGGATAGTGGTAAGCCTCGCTCCAGCAGTCTGAGCTGGGGcaaggatgaggatgatgagtaCAGCTTCCATAATGAAGGCACTATGCATAATCTCGACATTAGTGATGATGGAGATGATCTTGCACAGTATTTGGATCAGCTTTTGACCACTGCAGTGCCTCAGCGGGGGATGAGAGCAGAGGACAAGGCCAGCGGGCTCTGCCGCTTCAGAGCTGCAGCCAATCAAACAAGAGAGATAGTGTCTTTAGTCCACAAGGCCAGAGATCTCCAGCTACATAatgTGCAAATGTATCTGCCCACCAAGCTCTTTCGATCACCTCAACCATCTCTTAATTTAAAAGACTCCTCTAGACCAGAACCAAGCCAgGGTCCAGAGATGTTTGTGTCGTCAGATTTAAACCTGCCCCGTGATGCTAATGGAGCTATAGATTACATGGCTCTGGCCCAGCTGCTTAAGGATACACAGGGTCTCCAAGACCAGGCGGACATCCTATACATCCTCTTCAAAGACAAggGGATGGATTgggacacacagctgtatggTAAAGGCACTACAGTGCACAGGCTGCTGATGGAGCTGTATGAAAAGGCAGGAGACCTGCGCTGCTGGGGCCTCATCCGTATGATCTCTGGCATGCTACGCAAAAAAGTGGAGGAGCTTGACTGGGCCTGTTCTGATTTGCTGGCTCATCAGAAGCACTTAACGGTGGGTTTACCTCCTGAACCGAGGGAAAAGACCATCACTGCGCCAATGCCACCGGACCTGCTGGCTAAACTTATAGATGAAGCCAGTGAGAACAACATAACAATCTCTATCCTCACCCAGgagaTCATGGTGTACCTGGCGATGAAAATCAGGACACAGCCAGGTCTGTTCAGTGAGATGTTTAGGCTGAGGATTGGCCTCATCATTCAGGTCATGGCTACTGAACTGGCCCAGTCTCTTAACTGTTCAGATGAGGAAGCCACAGAAAGTCTGATGAGTTTGAGTCCTTCTGAGCTGAAGAATCTTTTACATCACATCCTCAGTGGCAAAGAGTTTGGTGTGCAGAGGCATGTGGATACAGGTGTGAGTCCTGCCATCTCTATCCATGAAGTCGGCCATGTGGGTGCCACCAAAAGTGAGCGTGCTGGCATCAGCAAACTGAAAAGTGATATGAAGATGACCTTTTCAGCACAGTCCTTTGATACCGACCACACAGAGTCTGTTatgcacCGTCTGACTTCATTCGAGTCATTTGATGGCTCTGTGAGTGTTCCAGTTGCGCTGGATAGCCGCCAGGGCCAGTGGCTTCGCAGGAGGAGGCTGGATGGAGCCCTCAACAGAGTGCCAGTGGGATTTTATCAGAAAGTCTGGAAGATTCTGCAGAAGTGTCATGGGCTGTCGATAGAAGGCTTTGTGCTCCCATCATCCACTACAAGAGAGATGACGCCAGGTGAGATTAAGTTTGCGGTGCATGTGGAGACAGTACTGAACAGAGTGCCTCAGCCCGAGTACAGGCAGCTGCTAGTGGAGGCAATCCTGGTGCTCACCATGCTGGCTGACGTCGATATCCAAAGCTTTGGCAGCATCATCCACGTGGAGAAGATCGTCCACATCGCAAATGACATGTTCTACCAGGACCAGaaagctcTTAATGCTGAAGAGAACATTTTAGAAAGGGACACATCCACAGGCATCTGTCGGCTCCTGTACGATAGCGCACCCAGTGGCCGCTTTGGCACAATGACGTACCTCACAAAGGCAGTGGCTACCTACGTACAGGACTTTCTGCCCAGTGGCTCATGTGCTTTGCAGTGATGTAATGTCTTAAGAGTAGAGAGAGCATCATTTTAAATAAGTCAAAGAAACTCATATCGGTTTAGGTCATTGTacaatatttaaacattcaTGGCTTTCAGGCAGTAAAGCATTACGCTGATGGAGAAGATGgtagttttcagttttcatagCCATTGTGTGTGAGTAATAGCAGAGTTTCTCTGTGAGTGcatttaactgtgtgtgtacattatttcattatatcaTGTACTGTTTGTTTACTGATCATATTTGGATGAGGTTGGTTGCATGAAAGTACTGTTGTCAGTGCGGCAGCTTTTCTGTCAGACTAAGAGAAGagttctctctttcattctccctttcattttttccttttttaacacATAACAGTCTCAAATCATATGGCATCAACCAACAGTCTAATCATTGTGATTAGACTGTCTAATAAGTTACAAAGGAATATTTTATGTATggagtttgattttttttccttgcgCAGTATGTTTACTTGTCATCTAGTTCTGTATAATTCAGACAGCATGATGACTTTTTACtagttaaaacattattttaagtACTTCAGCTTCATCAGAGAAATAAGttctttttaaagcaaatactttGCACACTTTGAACATAATATAGAAgctagtaaataaaataaataatttgtgtgcctaaaatatgttttcatatatggtgaaataaataaaaaatagatatcTTGTGATGTTTGAAATTGTACTgacttgttttaaaataatttatttttagtacaTTATAGGacattacagagaaaaagaacagatgTTTTACAAGAAGATCCTGtgtagtctgtttttttttttaaataatcaaattaataaatgcttATATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77566 lncRNA downstream 114173 16451677 ~ 16451892 (-) True G65508
TU77541 lncRNA downstream 134547 16431136 ~ 16431518 (-) True G65494
TU77540 lncRNA downstream 136707 16429143 ~ 16429358 (-) True G65493
TU77538 lncRNA downstream 138658 16427201 ~ 16427407 (-) True G65491
TU77517 lncRNA downstream 192918 16369532 ~ 16373147 (-) True G65472
TU77696 lncRNA upstream 8096 16592628 ~ 16594451 (-) False leap2
TU77804 lncRNA upstream 21475 16606007 ~ 16606592 (-) True G65700
TU77819 lncRNA upstream 90728 16675260 ~ 16676349 (-) False G65715
TU77820 lncRNA upstream 90728 16675260 ~ 16684591 (-) True G65715
XR_004577996.1 lncRNA upstream 144159 16728691 ~ 16735897 (-) True LOC117597072
XM_026936098.2 mRNA downstream 1928 16552388 ~ 16564137 (-) True LOC113539955
XM_034303424.1 mRNA downstream 2324 16552388 ~ 16563741 (-) False LOC113539955
XM_034303398.1 mRNA downstream 30179 16528806 ~ 16535886 (-) True LOC117596996
XM_034303399.1 mRNA downstream 30179 16532777 ~ 16535886 (-) False LOC117596996
XM_026936214.2 mRNA downstream 56371 16506973 ~ 16509694 (-) False zgc:103586
XM_026936997.2 mRNA upstream 8030 16592562 ~ 16594505 (-) True leap2
XM_026937053.2 mRNA upstream 19277 16603809 ~ 16605628 (-) True bmp15
XM_026936350.2 mRNA upstream 64653 16649185 ~ 16653787 (-) True otub1b
XM_026935979.2 mRNA upstream 71408 16655940 ~ 16661187 (-) True fam113
XM_026936431.2 mRNA upstream 78597 16663129 ~ 16669417 (-) True adad2
TU77497 other downstream 142901 16419310 ~ 16423164 (-) True tnfsf12
XR_003404041.2 other downstream 494373 16055022 ~ 16071692 (-) False acox3
XR_004577994.1 other downstream 574180 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 661710 15879471 ~ 15904355 (-) False tbc1d19
trnap-ugg_2 other downstream 690167 15875827 ~ 15875898 (-) True trnap-ugg_2
TU77801 other upstream 19576 16604108 ~ 16605717 (-) False bmp15
TU78232 other upstream 816062 17400594 ~ 17402464 (-) True G66053
TU78241 other upstream 854961 17439493 ~ 17444174 (-) False rnaseka
TU78578 other upstream 1009917 17594449 ~ 17634868 (-) True G66281
trnas-uga other upstream 1186618 17771150 ~ 17771231 (-) True trnas-uga

Expression Profile