RNA id: XM_026936846.2


Basic Information

Item Value
RNA id XM_026936846.2
length 4599
RNA type mRNA
GC content 0.48
exon number 18
gene id rgs12a
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20378775 ~ 20411656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGCCATAGTGATTGAATGACGCTTTGTGTTGAGTACAATAGTGAATGGCAGTGGTTGTCTGTGGAGGACAGAAGTGGAAAGGCTGAAAGTTTGAAAATACGAGCTGTTATGGTCAGTACGTACAATGACTGATTGATGGCTCACTGACTTTGGCTCTGAGCAGCAGTATCACCCAAGCCTTTTGTTGTGATTAGTTGGATCTCACAGGCAGAAATGAGAGCTCTGGAGCCAGCTGGAGGTGTGAGGAGATCTCTGGACTTCTCTCCAGCCCCAACAGTTCGCAGAGTGGAGATAGAGCGTGGCAGAGCTGGATACGGATTCACCGTAGTTGGGCAGGATCCCTGTGTCCTGAGTGGAATCATGAACGGAAGCCCAGCTCACGATGCAGGCTTGAAGCCTGGTGACTGTGTTTTGAGTGTGAATGGCACCGATGTGTCAACAGCCTCACATGAAACCGTGGTGGAGCTCATCGGTTCATCATTACGATCGCTTAGTTTGCTTGTCTCATCAGGTGACAGACAATCAGTAAATTTTGCCTCAAGTTCCCTGGCTGTTCAGGGAAAGCAGAAAGAAACGTGGTCAAATCCAGGACAGATGGAATCTTATGAGGAAGGTATAGGTGAGTCAGTGGGCAGTTTTAATACTGTTTTGGAAATTTCAGGTCAGGCTTGTACTAACGCATCAAAAAAGCAACCTAAACAGAGACCCAGATCAGAACCAGATATGTCTTATTGGTCTTATCGGTGTCCGTCCAAACACAGCCCGCATTTACTTGATCAGGAGGAACCATCTCGTGTTGTGAGTAAAGATTCGGTTTTCTCAGACTTTCAGAGTCAGCATGATATTTTACCTGACTCCAGCGCTCTGAACGTGGGAATGGTGGTAGGATACATAAACTCCATAGAACTGGATCTAGAGATTTCCCACTCTGAAGAGGAAACCTTACAAGCCATACGGGGATGTATCACTCGAATTGCAACTGAGCAGAAAACCCATTACCTGGTGATGATGAGGGTCAAGTGTAATTGTGTGCAGCTATGTGATGATAGGGATGTGGTTTTGGCTGCGTACCCTGCCGAGAACCTGGTCTTGTGTGCAGTATGTACTGAAGATAATAGGTTTTTTGGTCTCGTCTCAAAGGAGGTGACCAAAACTGATCAAAAAAAGGCAGAGCAAAGCACTTGCATAAAGACCTTATGCCATGTATTCATCATAGACCCAGAACTCTGTGATCACGCTGAGCATAAAAGCATCTCTGATCACTTTGGTTTCTCATGCACTGCTGACCCGGACACCCAGGGTTGTCTGGAGTTTCCCCAGACACCATATTCAATGTTAAACTTTGTGTCGGTCCTCTACACTGACATGGGAGACCATATTGAGAAATTGAGACTCAAACTGGATAGTGAGGATTGTGACCAACAGACAAGCACACGAAACAGTGGCAGTGGTGACAGTGGGATTGGAAACGTGTCTCCAGAGGATCAGGAAAGTTTTGCTGACCAGTGGAGTCTTACATCTCCAAACAGTTCCCATACAGTTTGGGATAAACCATCTCCATGTATCTCCCAGCAGAGCAATGGACCATCCCTAAAGCCAGAGCGTAGGTGCCTTCTCGCAGAGCCATTCCCTGACCCTGCTACTCCACAAACAAATGCGCCTATGGGAGAAGAGATTTCAGGTTGTGTGCCTTTAAATTCTATTTCTCAGTGTAAGCAACCACAACTGCCTGAAAATAAGACCAAACGGAGAGGAAGTCAGCGCTGGCCCTCTGTTAGTATCCGGGCTCGCTGGCAGAAACCTCGGCCTTCCAGCATTGACAGCCTGGCTGACAGCGATACCAGTGGACCCAAAGCTAAAAACAGTACTTTACCACCTGCCATGGAACAAATCCCTCCACTGAGATACAAAACACCTGGTGACCTCGCATATGACCTGACTTTGAAACTGTTTAGCAGTGGATCCAAGAATAAGGATGGAGAAAACAAGGGCTACAGATTTTGGGGTCTCACAAGAGGACGCTCATCTGTTCGACAAACCTCAGTTCGCACCAAACGACTCAGTCTGGCTCGTTCACTTGATGACCTTGAGacAGCGGCATCAGATAGTGAGCGAGGTGGAATGGAGCGGCATGGCTTTGGAAGCATTCATAGTTTGGAAAGTAACAGCAGCCTGCCCAGTGTCACCAACCATCACACTCTCTCAGAACGCCGTGTAGCAGCATGGGCCGTCTCCTTTGAGCGTTTGCTCCAGGATCCTGTTGGTGTGCGCTACTTCTCTGAGTTTCTGAAAAAGGAGTTTagtgaagaaaatattttattctggCAGGCCTGTGAATTCTTCAGCCAGGTTCCTGAACATGACAAGAAACAGCTTTCCCAGAAGGCCAGAGAGATCTACAATAGCTTCCTCTCCAGTAAGGCCACTACTCCAGTGAACATTGACAGCCAGGCGCAACTTGCAGATGATGTCCTCACGGCACCAAGGCCTGATATGTTCAAGCAGCCACAGCTACAGaTCTTTAACCTGATGAAGTTTGACAGTTATGCTCggtttctgaaatcctcactGTATCAGGAGTGTATGTTGGCTGAAGTGGAGGGTCGACCTCTCCCTGACCCTTACCATGTGCCctgtagccccgccccttctAAGCACAGCGTTATCTCAGAGCGCTCCAATTTCTCCACACCAAAAAAGGAAACTCGGAAGCCTAGGACAGGCAGGTCGAGTGACGACCTAAGAGATGACCCTGACAGGAGAAATGGCATTTTCTCCTGGTACAGAAACAGGAGCTTTGGTAAAGGTCCGAAGAAACGAGAAATAACAGATTTCAATTATAACAGTAATGGACGGAGGGAGTCTCAGGGGTCTTTGTCTTCTGGTGCCAGTCAGGAGTTCAACACACCCTGCTCCACATTGAGAAATGAGAGGAACTCCACATGGGAGAAGGACAAAATAGGGCCGAGTAGGTCATGCACAGTAGCACTCCCCGATGGCTcgagctgctgtgtgtgtctgaagcaGGGTGCTTCCATCAGACAAGTGCTGCTGGAGCTCTGCCAGAAACAAAGcatcaacatggctgctgttGATCTCTTTCTTGTTGGGGGAGAGAAGCCGCTGGTGTTGGACCAAGACAGCATGACTCTCAGTTCAAGAGACCTACGAATGGAGAAGCGTACTCTGTTCAGATTGGATCTGGTGCCTATTAACAGATCTGTGGGCTTGAAAGCCAAGCCGACCAAACCCGTAGCTGAGGTGCTGCGGCCTGTGGTTGCCAAGTACGGCCTGCGCCTTAACGACCTGGTGGCTAGAATAAGTGGAGAGACTGAGCCTCTTGATTTAGGACTGCCCATATCGAACCTTGACGGCTTGCGAGTTGTCCTAGAGTGCTCTGAACCAAGCTCTTCACATGCAGACAAGTCTAAGACACTTCCCTCCAAAGCACAGGGACCATCATtgaccagcagggggcagtcAACACCGGGAGATCACAGACCATCAGAGAAACCTGTGAAAGGGGAGGGAAGAGACAAACCCCCAATCAGTGAGACAccccaaaaaaagaaaggcaacAAGATTCATCTGGATGATGCTGAAGAGTTCTTTGAGCTGCTGAGTCGTGCTCAGAGCAGCCGTGCTGATGATCAGAGAGGCCTGCTGAGAAAAGAGGACCTGGTGCTCCCTGACTTTCTGCGTCTGAAGCCTGAGCCCAGTGCACCTCCATCCTGTTCcactcccacctcccaaaaacatgttcaTGTCTCCAACCAGCCCCCATCTGTCACCTCCAATGGACACAACTCCAAAGCTGGAGACAAGACAGACCTGTTCTCCCCGTCCCTCTCCCCCATTCTCCATCCACAAGGCCCCCCAGGGCAGGATGGAGAGGGACTGTGTGACCTCACCCTGGTGGGTGAGGGAGACATCAGCAGCCCTAACTCTACTCTACTGCCCCCTGTGCCAACCTTCCCACCCCCTCACGATGCCAACATCACCCCTCCACTGCCGCCTTCCGCCCACAGAAACCCCAGCTCAGgTGCAGTAGATGAAAGCGAGTCTCGAGTGAGCCACCAGCAGGGAGAAACATCAGCACAGAAAGATTCACCGTCTTTTGAGCAAAGGACAGATGTGGAAGACATCCCTCTGGATGAGAGCTTTGAGGGCTACGCAGCTGAGCTTCGTCAGTGCCAGAGCAAAATGAGGAATGGAACTTATTCTTCTGTCCATCCTCCGCGTCCCCTCAACAACGTCTCACACAGCAGCCAAAATAATGCAGCACAATACAAAGCTACATTTGTATGAATGATACTatgtagagattttttttaaaatgtgctagAGCACAAATGGTGTAATTGTGTAcaaatgtattttgtaatgATAATAACTTATTGAATGATTAAGTGAAAGctgtgattttacattttagttaCGGATCGAATAAAAATAACCATGATGTAACCTCTTTGGATATTCAGTAGGCTCACTGATGACGTTTTAGGTACAACCAGTGAATATGCTTCAAATATTAAAGGCAATCAGTGAATGAATATTTGGGAAATGGTAAATAAACGTGATCATGTTCAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80393 lncRNA upstream 103100 20250058 ~ 20275675 (+) True G67827
TU80206 lncRNA upstream 311610 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 311737 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 412887 19962599 ~ 19965888 (+) True G67642
TU80554 lncRNA downstream 68944 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 223692 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 280607 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 280607 20692263 ~ 20693111 (+) True G68070
TU80850 lncRNA downstream 453222 20864878 ~ 20895955 (+) True G68192
XM_034303464.1 mRNA upstream 905 20374263 ~ 20377870 (+) True msantd1
XM_034304049.1 mRNA upstream 6399 20352720 ~ 20372376 (+) True dtx4a
XM_034304048.1 mRNA upstream 6399 20353412 ~ 20372376 (+) False dtx4a
XM_026935887.2 mRNA upstream 26898 20349428 ~ 20351877 (+) False si:ch211-119e14.1
XM_026937239.2 mRNA downstream 47185 20458841 ~ 20479797 (+) True rtn3
XM_026937240.2 mRNA downstream 47256 20458912 ~ 20479797 (+) False rtn3
XM_026937241.2 mRNA downstream 47264 20458920 ~ 20479797 (+) False rtn3
XM_026936377.2 mRNA downstream 73988 20485644 ~ 20496755 (+) True si:dkey-28a3.2
XM_026937249.2 mRNA downstream 93108 20504764 ~ 20544748 (+) False eml3
trnaa-cgc other upstream 26290 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 224004 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 277677 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 549885 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 550393 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 608602 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 915690 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 1217420 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 1217420 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 1340760 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile