RNA id: XM_026936855.2


Basic Information

Item Value
RNA id XM_026936855.2
length 2515
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC113540392
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24145082 ~ 24148968 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgacaataaaaataatcctggATTTCTGTTTCATTCAGTATAAAATTCGTGCTAATATGTCTTGTCGGGGGAAAAAAGGTGCACACTTTCATATTTAGTGATGAAAATAAGGACAGTATTCTGGataaattaaagcaaaagcACCATATCAGTTTaatggaaacaaaaaacaaacaaaaacaggaagaaaaaaaaacgaaatgGGAACAGATGTACCGTATGCATTCTGATCTTATAATTCAGTtggatattatatattaaaataataataataataataataataataataataaaatctgaaggtgtgcagaattttttttttgtagttccGGTCGGTTGCCATGGATACAGTTTTTACGGTGAACAACAGGAAGTATGAGAAGCCTCTCTGGGTGCCATTCACCAGTGTTTATGCAGAAGGAGCCATAAACACAAGAGGCCATGTTTGTCGGTTGCATAAGGACAATGGAAAGAAGAGGAAGGGGTTATCAGTTAATTAGAACAGCGCCTCCTGTATATAGTGCAGCTCTGAGATGGGCGGGGCCTACCGACCATGACCGGAGAAAATGGGCGGGGCTTGTTAGCGCAGAGCGAGGGAGATGGGCGGGGCCTGTTAACCCAGCGCGATACAATGGCTCCGCCCACTTCTCCACAACTAGTGACaGTAAAAGACCAAGAACACATGACCAAGAGGACAGGACACTGATCCCCACCATTCCAGCACCATCTCAGGGTGTCTCTTTGCCAAGAATTACTGACAAGGATTTCTTAATCACGTGCTTAACACGACAAATTGAGTATCTACACATATCTAAAGGATTGAGTGCACCAAAGAGAGCTTCATCAGCCAGGAGTGCCGATTTGTTGCACGAGCCAGCCATCTGCTGTGACTGGCCAGAATCCGCCAAAGTTCTGAGACATCATCGTAAAAACAAGCTAAGGATGCTGACACACAGGTGGAAGAGGCTTGGTATCCAGGATCCTGTCGGTGGTAACAGGAATGACTACACACCTGAGCAGAGCCATAGAAAGAACCAGCTTGCAATGGAAACAGACTCTTTACTGAAAATTACCCCCATAAAGGCCAGTCAAGCTGCAGCTCAGAGTGAAAATGGGGAAACAAATGGCTTACACTGTTTGAGTTTGAACATTTCTGGAGTTGGACTTTCAAAGGGGAAAGTAAGTGACAAACACTCGTCATTTAACATGTCAGGATCATCGGAGTGCCACACCGACAGCGACCTTTCAGATCAAGAGCAGGAAAGCACTGAAATGTCAAAGTGGGCAGCAGCCATGGAATTAGAGTTGAAGCCAGAGCCTTTTGACGAGGACCTGGACCTGGACTGTCTTTCCACAGAAACAGCATTTTACCCAGAGGTTCTTCCTGCTTCACTCAAAGTCCTGGACTCCACACAGAGTCTGTCCTCTGAGATACAGCAAAGTCTTTTTGTGTCTGATCCTTGCCTTGCTCCTGTAATAGCACGGCTGACAGAGTTAGAAAGGCTTCAGGCTGCTACTGTGCAGAAAGAACGAGCAAAACTAGCACGATCCCAACCAGCTACTGCTAATACACGAAACGGCAATCGTTTGAGAAAAAGTGACCTTCCAGGATGCAAGACAGGGATTTCAAGGGATGTGGAAAGCAACTCTGTTATGTGTAGTTTTACCAAACTCATGGTTTGTCCCAACTCTTCATGCAGATGCAGGCCTCATACTTGCCCTTCGACAAAATCAGGCCAAGGAAGCAGGAGCAAGTTACTACATTCTACCTTACCTAAACATCCTGACAATCTGTCAGGCAGATGCAAAAAAGCTGAAACTGTGCTCCCAGCTTTCTCTGTTAGTATGAAGGTCCCCCAAAAACCCACAGTGCCAAACAGGACCAagagtccacacacacagagagactcaaCTTCTGCCAAAAAGGCAACCGTTCCTAACAGGAAAACTTAATCCTGGTATTCATCAGTGTCGGATGTTTGTCATTTAGGTACTGCAGTCCTGTAAGGTTTTAATTATATCGGGACATAAGTATGTATATCTATGGTAAAAGGTATTTATTGCTCAAAATATAAGCAccagaaaacatgaaaaaagacCACAGGAGtattacaactttttttttctttatttattcatggcTTATATTGTCATTATACAATGTGCATCTgttgaatgaatatgaatgcaGTATTTGAACAGTTCATTTGAAAACTCCTGATGtctgtgaatgagtgaagagATGATGGGCTTCTTTAAAAAAGGATTTCAGCAAAAGGGTGTGTGACTAGTCAGGTTATCCTCCTTGTAGGGCTGTATAGTGATCAGAAGAGGAAGGAAATGTCGACTTAccctaaaataaaaacaaattcaagTTAGTGTTGAGGATCACGTGTAAAGACACGGctcagtgaaaaagaaaaaaaaaaagaaaaaaaaaaaaaagaagggtaTTACCTTTCAGTTCTTCAATTTGGCTATACCACCAATTTATTACAATGTTTCAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83047 lncRNA upstream 6194 24138635 ~ 24138888 (+) True G69987
TU83005 lncRNA upstream 38859 24028106 ~ 24106223 (+) False klhl18
TU83023 lncRNA upstream 60864 24083606 ~ 24084218 (+) True G69966
TU82994 lncRNA upstream 135222 24008464 ~ 24009860 (+) False G69946
TU82993 lncRNA upstream 136419 24007703 ~ 24008663 (+) True G69946
TU83213 lncRNA downstream 417277 24566245 ~ 24566613 (+) True G70129
TU83214 lncRNA downstream 418032 24567000 ~ 24567318 (+) True G70130
TU83218 lncRNA downstream 421680 24570648 ~ 24570850 (+) True G70134
TU83222 lncRNA downstream 425368 24574336 ~ 24574570 (+) True G70138
TU83223 lncRNA downstream 434208 24583176 ~ 24583376 (+) True G70139
XM_026937349.2 mRNA upstream 8274 24134676 ~ 24136808 (+) True ccr9a
XM_026936985.2 mRNA upstream 17846 24121553 ~ 24127236 (+) False zgc:136930
XM_034303446.1 mRNA upstream 17903 24121553 ~ 24127179 (+) True zgc:136930
XM_026937230.2 mRNA upstream 40349 24089949 ~ 24104733 (+) True klhl18
XM_034304069.1 mRNA upstream 120917 24021065 ~ 24024165 (+) True LOC113540619
XM_034303197.1 mRNA downstream 12810 24161778 ~ 24170467 (+) True si:dkey-154p10.3
XM_026937195.2 mRNA downstream 13029 24161997 ~ 24170467 (+) False si:dkey-154p10.3
XM_026937197.2 mRNA downstream 21678 24170646 ~ 24174507 (+) True LOC113540614
XM_026937196.1 mRNA downstream 26290 24175258 ~ 24176754 (+) True opn4.1
XM_026935937.2 mRNA downstream 29999 24178967 ~ 24183754 (+) True tmem53
TU83028 other upstream 35193 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 824739 23318504 ~ 23320343 (+) True G69509
XR_003404030.2 other upstream 2382781 21754080 ~ 21762301 (+) True LOC113540377
XR_003403979.2 other downstream 710058 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 1558859 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 1749167 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 2079796 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 2139322 26288290 ~ 26292784 (+) True zgc:66427

Expression Profile