Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026936874.2 |
| length | 2657 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 18 |
| gene id | prkci |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 26917159 ~ 26933519 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0001738 | morphogenesis of a polarized epithelium | biological_process |
| GO:0007502 | digestive tract mesoderm development | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0042476 | odontogenesis | biological_process |
| GO:0048546 | digestive tract morphogenesis | biological_process |
| GO:0035050 | embryonic heart tube development | biological_process |
| GO:0000132 | establishment of mitotic spindle orientation | biological_process |
| GO:0045199 | maintenance of epithelial cell apical/basal polarity | biological_process |
| GO:0001841 | neural tube formation | biological_process |
| GO:0045217 | cell-cell junction maintenance | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0034334 | adherens junction maintenance | biological_process |
| GO:0007097 | nuclear migration | biological_process |
| GO:0007405 | neuroblast proliferation | biological_process |
| GO:0021744 | dorsal motor nucleus of vagus nerve development | biological_process |
| GO:0060042 | retina morphogenesis in camera-type eye | biological_process |
| GO:0008078 | mesodermal cell migration | biological_process |
| GO:0016332 | establishment or maintenance of polarity of embryonic epithelium | biological_process |
| GO:0031226 | intrinsic component of plasma membrane | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005915 | zonula adherens | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0005543 | phospholipid binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0004697 | protein kinase C activity | molecular_function |
| id | description |
|---|---|
| K06069 | PRKCI; atypical protein kinase C iota type |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU85065 | lncRNA | downstream | 21595 | 26894681 ~ 26895564 (-) | True | G71764 |
| TU85024 | lncRNA | downstream | 57704 | 26847346 ~ 26859455 (-) | True | G71734 |
| TU85022 | lncRNA | downstream | 60487 | 26853267 ~ 26856672 (-) | True | G71732 |
| TU84994 | lncRNA | downstream | 220062 | 26696893 ~ 26697097 (-) | True | G71707 |
| TU84992 | lncRNA | downstream | 220838 | 26694946 ~ 26696321 (-) | True | G71705 |
| TU85066 | lncRNA | upstream | 1471 | 26934990 ~ 26935197 (-) | True | G71765 |
| TU85140 | lncRNA | upstream | 97798 | 27031317 ~ 27036462 (-) | True | G71815 |
| TU85141 | lncRNA | upstream | 97798 | 27031317 ~ 27035852 (-) | False | G71815 |
| TU85185 | lncRNA | upstream | 209587 | 27143106 ~ 27151314 (-) | False | G71854 |
| TU85183 | lncRNA | upstream | 215391 | 27148910 ~ 27151314 (-) | True | G71854 |
| XM_026936963.2 | mRNA | downstream | 3579 | 26903908 ~ 26913580 (-) | False | skila |
| XM_026936961.2 | mRNA | downstream | 3579 | 26903908 ~ 26913580 (-) | True | skila |
| XM_026937244.2 | mRNA | downstream | 27823 | 26881468 ~ 26889336 (-) | True | nadkb |
| XM_026937243.2 | mRNA | downstream | 27825 | 26881468 ~ 26889334 (-) | False | nadkb |
| XM_034303326.1 | mRNA | downstream | 72141 | 26835646 ~ 26845018 (-) | False | samd7 |
| XM_026937110.2 | mRNA | upstream | 47670 | 26981189 ~ 26982209 (-) | True | LOC113540546 |
| XM_034303296.1 | mRNA | upstream | 171975 | 27105494 ~ 27108411 (-) | False | tmem125b |
| XM_026935890.2 | mRNA | upstream | 171975 | 27105494 ~ 27108411 (-) | True | tmem125b |
| XM_026935891.2 | mRNA | upstream | 171975 | 27105494 ~ 27107789 (-) | False | tmem125b |
| XM_034303292.1 | mRNA | upstream | 175293 | 27108812 ~ 27143851 (-) | False | cfap57 |
| TU84853 | other | downstream | 366129 | 26472080 ~ 26551030 (-) | False | G71596 |
| TU84852 | other | downstream | 366129 | 26537102 ~ 26551030 (-) | False | G71596 |
| TU84653 | other | downstream | 541071 | 26373758 ~ 26376088 (-) | False | ltb4r2b |
| TU83344 | other | downstream | 2612233 | 24304374 ~ 24304926 (-) | True | G70255 |
| XR_003404116.1 | other | downstream | 2880305 | 24036718 ~ 24036854 (-) | True | LOC113540746 |
| TU85159 | other | upstream | 163083 | 27096602 ~ 27100858 (-) | True | G71832 |
| TU85245 | other | upstream | 270264 | 27203783 ~ 27204186 (-) | True | G71909 |
| trnat-ugu_3 | other | upstream | 461838 | 27395357 ~ 27395429 (-) | True | trnat-ugu_3 |
| trnat-ugu_4 | other | upstream | 462632 | 27396151 ~ 27396223 (-) | True | trnat-ugu_4 |
| XR_003404034.2 | other | upstream | 494901 | 27428420 ~ 27432678 (-) | False | LOC113540508 |
