RNA id: XM_026936893.2


Basic Information

Item Value
RNA id XM_026936893.2
length 3338
RNA type mRNA
GC content 0.50
exon number 14
gene id ranbp9
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23353969 ~ 23376185 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTGACTGGACTCcgcctcagccaatcagatcgcCGCATTTCTcaccaacaacaaacaaaagatCGGAGTGAGAGCTCTGTCGATGTCTGTGAATTTTATTCCTCAATTCGCTGCATGTCGTCCTAGAGAGTGGGATTCATGCCGTTTGGCTTTGTTTTGGCATCTCTGTGCATCGACTTTGTATGAACAGCGAGGAGCTTCTCCGCTTCACTAACCTAGTCAGCCAGGAGAGCTGTTTGCGCCGTGCTCTCTAaagctagcctgctagctaaccagaaaaaaaaagcgaaaaaacagaaagagttCGTGTTTTGTGGTCGGTGACAGCAGATAGAGCTCATCGCTGGAGTCTTCCAGAGAGCTGTCCAGCTAAAGGTAGCTGGTTAGCTGTGAGTGTTAAAGGGAGGAATCCGATCGCGATGTCCGGACCGTCATCGGGCTGCGGCTTTCTGATGTCGGTTGTTCACGGAGACTTGGCTCTAAACGAGCAGGAAAAAGAGCTCAACCAGCGGCTCAGGCGCCTTTACCCGGCCGTCAACGAACAAGAAACTCCGCTGCCCAGATCCTGGAGCCCAAAGGACAAATTCAGCTACATTGGCCTGTCACAGAACAACCTGCGGGTGCATTATAAAGGTCATGGAAAGACACCTAAGGATGCGGCATCTGTTCGTGCGACTCTTCCTATTCCAGCTGCCTGTGGGGTCTATTACTTTGAGGTGAAAATCATCAGTAAAGGACGAGATGGGTACATGGGGATTGGTCTCTCTGCCCAGGGGGTCAACATGAACAGACTTCCAGGCTGGGACAAGCACTCCTACGGCTATCACGGAGACGACGGACACAGTTTCTGCTCATCAGGCACAGGGCAGCCGTACGGGCCCACATTTACCACAGGCGACGTGATTGGCTGCTGCGTCAACCTCATCAACAACACCTGCTTCTACACAAAGAATGGCCACAGTCTAGgtATAGCTTTTACAGATTTACCaCCCAACCTGTACCCGACAGTGGGTCTTCAAACCCCGGGAGAGCTGGTGGATGCTAATTTTGGGCAGCATCCATTTGTATTTGACATAGAGGACTACATGCGTGAGTGGAGAACCAAGATCCAGGCTCAGATTGAGCGCTGTCCCATTGGCGAGCGAGAGGGCGAGTGGCAGGCCATGATTCAGAAGATGGTGGCCTCCTACTTGGTCCATCATAGTTACTGTGCCACGGCTGAAGCCTTCGCCAAGTCCACTGACCAGGCTGTGCACGAGGAGCTCGCTTCAATCaaaaacagacagaAAATCCAGAAGCTGGTTCTTTCCGGCCGAATGGGGGAGGCCATAGAGACCACTCAGCAACTCTACCCCAGTCTGCTCGAAAGGAACCCCGACCTGTTATTCATGTTAAAagtgagacagtTCATTGAAATGGTGAATGGCACTGACAGTGAGGTACGCTGTCTCGGTGGACGGAGCCCAAAGTCCCAGGATAGCTACCCTGGTTCTCCCCGCCTTTTCAGTAGCCCCACCCACAAAGCCACAGGCTCTCAGGCCTACCCGTCAGGTTTTGATAGTAACTGCTGTAATGGAGTGTCGTCCAGTAAAGCTCACTCCTCAGCACACAGCCACAAACCGTGTCCCGGAACTACGGGCAGCGGTGAGCTGGGGGTTCTGAACGGCAGCCGCACACAGCAGTCCAGCATAAGCAATGATGTAGATATGGAGGTGGATCACATCTCTAACGGAGTGTCCGAGTCCTCCTCAAACGGCTTCTTGAATGGGAGTGCCACACACGCAGCAGACATTGAGGACTGCGAGGCGGAGATGGTAGAGTCGGCTCAGTCCAAGAGGCAGCTCTGCGGGGGGAGCCAGGCTGCCATCGAGAGGATGATCCATTTTGGCCGAGAGCTGCAGAGCATGAGCGAACACCTTCGCCGTGAACGTGGCAAAAACTCAGCCAACAAGAAGATGCTGAAGgatgcTTTTAGTTTGTTGGCATACTCAGATCCTTGGAACAGTCCTGTGGGCTACCAACTGGATTCCATCCAGAGAGAACCAGTCTGCTCCACACTCAACAGTGCAATATTAGagaCTCATAACTTGCCCAAGCAGCCCCCTCTGGCTCAGGCCGTGGGTCAGGCGACTCAGTGCCTGGCACTTATGGCCCGCACAGGCATCGGCTCCTGCGCTTTCGCCTCAGTGGACGATTACCTGCACTAGCCCCGGGAGAAGTATCCCTTTAAATGGGCCATGCAGCACAGTCTGCATCACCCCAACTCAACCTGGCCACTCGAACATCGGGCCCGTCTCTAATCATGACCCGGAGCGCCTCATAAGCCGGACCCATTCCAAATCCTGACTCTCACTCTCTTCAAGAGACTGGATCCTTTACACACAGGCCATCCTGAATCTAAAGACACATTAGAAGGATCCCTCAAGCCAAACAAATTCCTGAACCATTACAcctttttgattttctttttaatttgggagagggaggggtgtgtgtatgtgtgttgcagGCTCCGATTGTTTGTTTTCTAGTTTGAGGCATGAGACAAATTTATTCTGATTCTAATTAATGTTATAATTAAACTTGCATATAAGATTATATTTGTTCTCGATTGAAAGCTGGCTAAAGTGAGCACGAAGGCCCCCCTACAGTTAACACCCTGCTGTTTTTAAGGTGTCTGCTTGTGTATTTGTTACAACCCCCTCACACCTTGCCCTTTTTTTGAAAGCTATATTAACATGCAGAGTGGAATATTTTAGttatctaaagaaaaaaaaaaatgcagtccaACAAAGCTGGACTCCTCCTTAGTGGTGGTATTTAGTATAGAGAGTTTAGTGTGAGCTGTATTTTGAGTTAAGCCCTTCTTTGTGCAAGCGCGCCCTCCCTCTGCCAAGTCTGCACAGCAGGTTTGATGCAACGTTTGGACACTTGGATTTGTAACCGTGTGGATGTCTACGGCTATCCTGAGTCTGTCTCCGAACTGTTCTCATCCAGGCCGACGCTCACCACTCTCACATTTCTGTACAGTGCAGCTCTCTGAAATACGCCTAGGCTTGTATTTATCGATCGTCCCTGAGTTTTGGATAAACCTCCCTTGTGCAtagtaacaaaaacattaaaggtaaaatGTGTCAGAACTGTTATTCTACACTGCTTGATATATACAAGCCCTGGCTGAAAAGAGGAAAGCCTGTTCCTGGTTTTCTCCTGTGTTTCACCAGCCAGCCCTTATGACCATCACTACGTTACAAAAGCAAGGAGAATGATACAGTATTGTCAACAGCACTGTCTTATCattttcagtaataaaatacaaatacccAGGTGGACAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82453 lncRNA upstream 22440 23331033 ~ 23331529 (+) True G69514
TU82375 lncRNA upstream 61971 23291410 ~ 23291998 (+) True G69449
TU82369 lncRNA upstream 69043 23284554 ~ 23284926 (+) True G69443
TU82192 lncRNA upstream 349867 23001998 ~ 23004102 (+) True G69294
XR_003404049.2 lncRNA upstream 415228 22926810 ~ 22938741 (+) True LOC113540593
TU82521 lncRNA downstream 71278 23447463 ~ 23457206 (+) True G69570
TU82635 lncRNA downstream 234768 23610953 ~ 23611157 (+) True G69641
XR_004578011.1 lncRNA downstream 278737 23654922 ~ 23767863 (+) False LOC117597085
XR_004578009.1 lncRNA downstream 278737 23654922 ~ 23767863 (+) False LOC117597085
XR_004578008.1 lncRNA downstream 278737 23654922 ~ 23767863 (+) False LOC117597085
XM_026936872.2 mRNA upstream 4342 23345058 ~ 23349627 (+) True rnf182
XM_026936338.2 mRNA upstream 77168 23273523 ~ 23276801 (+) False ackr4a
XM_034303654.1 mRNA upstream 77168 23273545 ~ 23276801 (+) True ackr4a
XM_026936337.2 mRNA upstream 77168 23273545 ~ 23276801 (+) False ackr4a
XM_026937016.2 mRNA upstream 123516 23215075 ~ 23230453 (+) True si:ch211-106h4.6
XM_026936928.2 mRNA downstream 10824 23387009 ~ 23391001 (+) True epdr1
XM_026937189.2 mRNA downstream 16473 23392658 ~ 23401730 (+) True stard3nl
XM_026935925.2 mRNA downstream 218776 23594961 ~ 23608201 (+) True otulinb
XM_026937124.2 mRNA downstream 238255 23614440 ~ 23641469 (+) True ankhb
XM_034304162.1 mRNA downstream 272086 23648271 ~ 23650633 (+) True mycb
TU82445 other upstream 33626 23318504 ~ 23320343 (+) True G69509
XR_004578017.1 other upstream 1591668 21754018 ~ 21762301 (+) False LOC113540377
TU83028 other downstream 732610 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1482841 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2331642 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2521950 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 2852579 26228764 ~ 26229191 (+) True G71385

Expression Profile