RNA id: XM_026936902.2


Basic Information

Item Value
RNA id XM_026936902.2
length 2780
RNA type mRNA
GC content 0.46
exon number 11
gene id rnf220a
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24294636 ~ 24409297 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGACGCACGCTGGTCACGTGACTCCGGCCAATATGGCGCTCGCTCGCTGAGTCGAGCCGCTCGTTACTATAGTAATGTTTTCCCAATCCTTCCCCATCCTTTTTAAATTGAAAGTGCAGGCCTTCGCCGGCTTCTGAGGAATGACACAGACCTCATCAGTCGTTTAGAGACATGCGTTTTTGGACTTTCAGTGTGTTCTCGCGGGAGCGCTAGAAATGGAAGAGGAGGTGAAAACAAATGGCAAAAGAGAAACATTTTTGCGCGTGCGGGCAAACAGACAAACTCGACTGAATGCTCGGATCGGCAAGCTGAAGCGGCGGAAGCCGGAGGATGGACAGGTATGTCCGTTGTGCAGCGCTCCGCTGGAAGGAACAGTTGAGGAAATGAATAGGCATGTGGAAGAGTGTCTGTTAAAGAGGGAGGGTGGCATGGAGGACGACCAGGCCGATATGGAAGGCGAGAATGGCACCCGCTTCGAAGAGTATGAGTGGTGCGGCCAGAAGAGGATCCGAGCCACCTCTCTGCTGGAGGGAGGCTTCAGAGGAACAGGCTTTGCCATGTGCAGTACAAAAGAGAGCCATGACAGTGACGCCGACCTGGATGTGGACGGAGACGACACACTGGAGTACGGCAAAGCACAGTACACTGAAGCAGATATCATTCCCTGTTCCGGAGAAGACCAAGGGGAGACCAAAGAACGCGAGGCACTCCGTGGAGCCGTCTTAAATGGAGGCATGCCATCCAACAGGATAACGCCGGAGTTCTCTAAGTGGGCTAGCGATGaaaTGCCTTCCACCAGCAACGGTGAGAGCAGCAAGCAGGAGGCCAGTTCTGCATCGACGTCCACTGTGCCCAGGACTTGCAAAAACAGTGAGATCGAGAAAATCACAGAGGATTCCACAGGCACCACACTGGACGCTCTGAAGGCTCGCATCCGAGAACTGGAGAAGCAGATCCTCAGAGGAGACAGATACAAGTGTCTGATCTGCATGgACTCCTACACAGCGCCCCTCACCTCCATCCAGTGTTGGCATGTCCACTGTGAAGAATGCTGGCTTAGGACTCTGGGAAATAAGAAACTGTGTCCACAGTGCAACACCATCACATCGCCAGGAGACCTCCGACGCGTGTATTTGTGAACGAGTCACCATCAGCGTCCAGATTCTTCcccctttttcctttttgtctgTTCTGTTCTGGTGGATTTCAGTTTCCTTTTCCAGACTGAGAGTGTTGTCCCGATAGTAACAAGGAGCGTCTGATGTAGCAGCAAActgcacagggacttgtaaggaCTATGTATAGACTCAGTACTTCCCTGTGAGTGAGAAGCTCCTCCCACTTCTTGCCCAGCCTCTGACTCTGCCCCCTTGTGGTGCTCCATGTTATGGTGCAGGTCCATAATGCTGCTGCCCACTTCCCCGCTTCGCTTAGACACACGTCCTCTGTCTGCTACgatggagtgtgtgttcgtgtgtgtctgtgtgtgcatgttggtGGGATCTCTCTCAGCAAGGCCACTGAGCTAGTCTTCAGCTGGGACAGCCCTCCATCCTGGCagggactaaaaaaaaaaactgataataGTTTAGCCTCCACCCTTCTGTCCCTTTCATCCCTTTCTTCAAACCGTCATTGTGTTTTTTCTCCCAGCCCTCAATTTTCACTTCTTTTGTGGTGTTCTAGTGACGTCAACCAAATTCAATGAACCAGTGCAAGCACATGTATTATAGTCTTGTATGTTTACGGTGTTGTGAGTAAATGACATAGAGAACACACTTGTATACACATGCATAACATGCgcacacactcaaaaaaaaaaaaatgacacacacaagTATATATTGCTAAAGTCCAGTTTTAGTTGGGGCCGGGGGTCGGGTGGGTGAGGGAGGGGCTGATGTTTCAATCTTTGTGGAAAAAGAAATCCCTCtgtatttttaaacagatgTTGTTGTCTTGAGGTTGAAGTTGTATTTCATTGTACAGGAagaaatttaataatattaataatgaagtaCTCGAACTAGGCTTTAAAGGTTTAggctgtacatttttttttcaactctgATATATGGTATAAACTGTAGATTCAAATCTAAAGTAAGGGagctcatctttttttctttgccttttttaaatattggaaAGACTGATTTTAATTTACTGTTAACCACCCTGATGATGCTTTTGAGTGACAAGAGAAATCATTGAAGGAGGATTAAACAAGTTGATCATCATCATTTTGTGTAAGTTTGCTGCAAGCAGACACATGAACAGGTGTGATTCTGTTCTTCCTGTCCAAGATGGGCCTATGTGAATgatgttgaaagaaaaaaaaaaagaaaaagaagaagcttTGGATGCCCTTGTTTTTGGGATCACACATGTTCAGATCATTCAGCTCCATTGTGGAAGACAGTgatgcttttcttttcctttgttCCTACAAGAAGGATCAGATAGGACTGGATGATTGACAGATGGCCTGGTCCCTCCGCTCTCTCCAGGAGTGAGATGGTGTACTTTTGTATTTGTACAACTATATattctgtgatttttcttttctgtattgATGTAAGCAAGGGGGGAAAAGAattcaagaaaaagaaagcaaattGCTGATCCCAGTCCCACAATAAATGGTCAAATGTtgcaactctttttttttttttttttttttttttttttttttttcatttttatctttgcACCATTAGCTGAGAGATTAATGGCTGTCTCCTTCAATTCTGTAAATAAACCAGTTTTCAAATTTGA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83047 lncRNA upstream 249385 24138635 ~ 24138888 (+) True G69987
TU83005 lncRNA upstream 282050 24028106 ~ 24106223 (+) False klhl18
TU83023 lncRNA upstream 304055 24083606 ~ 24084218 (+) True G69966
TU82994 lncRNA upstream 378413 24008464 ~ 24009860 (+) False G69946
TU82993 lncRNA upstream 379610 24007703 ~ 24008663 (+) True G69946
TU83213 lncRNA downstream 156948 24566245 ~ 24566613 (+) True G70129
TU83214 lncRNA downstream 157703 24567000 ~ 24567318 (+) True G70130
TU83218 lncRNA downstream 161351 24570648 ~ 24570850 (+) True G70134
TU83222 lncRNA downstream 165039 24574336 ~ 24574570 (+) True G70138
TU83223 lncRNA downstream 173879 24583176 ~ 24583376 (+) True G70139
XM_026935937.2 mRNA upstream 204519 24178967 ~ 24183754 (+) True tmem53
XM_026937196.1 mRNA upstream 211519 24175258 ~ 24176754 (+) True opn4.1
XM_026937197.2 mRNA upstream 213766 24170646 ~ 24174507 (+) True LOC113540614
XM_034303197.1 mRNA upstream 217806 24161778 ~ 24170467 (+) True si:dkey-154p10.3
XM_026935888.2 mRNA downstream 66892 24476189 ~ 24478804 (+) True klf17
XM_026936540.2 mRNA downstream 97908 24507205 ~ 24561278 (+) True slc6a9
XM_034303740.1 mRNA downstream 100050 24509347 ~ 24561278 (+) False slc6a9
XM_026936539.2 mRNA downstream 125622 24534919 ~ 24561278 (+) False slc6a9
XM_034303741.1 mRNA downstream 141568 24550865 ~ 24561278 (+) False slc6a9
TU83028 other upstream 278384 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 1067930 23318504 ~ 23320343 (+) True G69509
XR_003404030.2 other upstream 2625972 21754080 ~ 21762301 (+) True LOC113540377
XR_003403979.2 other downstream 449729 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 1298530 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 1488838 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 1819467 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 1878993 26288290 ~ 26292784 (+) True zgc:66427

Expression Profile