RNA id: XM_026936905.2


Basic Information

Item Value
RNA id XM_026936905.2
length 3051
RNA type mRNA
GC content 0.45
exon number 15
gene id plk3
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25973881 ~ 25979456 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGTGCTCGGGCGAGTTTGATGAGGAGTTGAAGGGTGGTGGGCTTACGGACACGTTTTGCGGACCAGGAGATCGCGTCTTAATGAATGGATCCATCTTGTTTCAGCACAGTGCAGCGTCGTTCCTGTCAAATGATGAACCCGGATTTGTTTAAGCCGTCTGCGGAGCGCTCTCTGCCAGCCCTGACGCAAAAACCGAGCCGGAGCAAATGTGAACAAACGAAAGTCGAGCTGGCGCAGGTGGTGATCGATCCGAAAACTGGACGATCGTACTCCAAAGGAAAGCTTTTGGGAAAGGGAGGGTTTGCTCGCTGTTATGAGATGACTGATCTTTCCAGCAACAAGATGTATGCCGTGAAAGTGATTCCACAAAGCAGAGTGTCCAAGCCACACCAGAGAGACAAAATAACCAATGAAATTGAGCTGCACAAAACCCTCCAGCACAAACATGTTGTCAAGTTTTCTCATCATTTCGAAGATCAGGACAACATCTACATCTTCCTCGAGCTCTGCAGCAGAAAGTCCTTGGCACACATTTGGAAAGCACGACACACCCTGACAGACCCTGAAGTACGTTACTACCTCAGGCAAATCATTTCTGGCCTCAAATACCTCCACAACAAAGGAATCCTCCACAGAGACCTCAAACTAGgcaATTTCTTTGTGAATGAGAATATGGAATTGAGATTAGGAGACTTTGGGCTGGCAGCAAAGCTGGAGACTGTTGAGCAGAGAAAAAAAACTATCTGTGGGACACCAAACTACCTGGCACCAGAAGTATTAAATCGTCAAGGACATGGGACTGAGTCAGACGTTTGGTCACTGGGTTGTGTGATGTACACACTTCTGTGTGGGAACCCTCCATTTGAAACATTAGACTTGAAAGAAACATACAAATGCATCAAAGAAGTGAAGTATACACTTCCACTGTCACTCTCAGCAGCAGCACAGAAGTTAATTTCTGCAATTCTGCAAAAGAACCCCAATGAGCGCCTTACTCTTGACCAGATTCTGGCTCATGAGTATTTCAGCAAGGGCTTCACTCCAGACAAACTTCCTCCCAGCGCATGTGTGATGGTGCCGGAGCTCAACCCACCCAGCCCTGCCAAGAAGTTCTTCACCAAGATGGCCAAGAGCCTCTTTGGCAAGAAGAAATCAAAAGAGAAGAACCCCAGTGAGGACAAGGAGGACATCTCCAAGCTTGTCTCAGGCATGGTTAAGCACTCAATTAGCCGGCAGATCAGCTACAAGACAGTGGGAGTGAATGAGGTTGCATCTCCAGCAGGTCAGTTGGCTGTTTCAAGGCCCTTAGACACACCAGCTGAGGACGAGTCCAGAAAGTCAACATCCCGTTCCTTCAAAGGCACAATGGCCAGCAGTACTGATGGATGCGAAGACCCACTGACCCCAGCTGCTGTGGCCGAGGCTACCATGAAGGTCCTCATTAATTGCTTGTCCACCATGCCAGCAGCATCTAGGAACACTCCATGTGTCACAAATACTAAACCTTTTGTCTGGGTGACCAAGTGGGTGGACTACTCCAACAAATATGGCTTTGGCTATCAGCTCTCCAATCAGAATGTGGGAGTCCTATTCAATGAAGGCACTCATCTGAGTCTGTGTGACCAGCGAAGGGTAGTTCGTTATTGTTTGACCAACAATAAACACTTCACCTTCCAAGCGGATGCACTACCAGAACAGCTCCAGAGCCAGAAACACATTGTGGAGCTGATGGCCAACTACATGGAGCAGAATCTCATGGAGGGTGGAGATCTGGGTTGTGATGAGCAGCCATCTGCTACTGACTGTCCCCTTCTCCTGCAGTGGATGAAGACAGACCATGCTTTAGTTATGCTTTTTAACAATGGTTCTCTACAGGTGAACTTCTACACTGATCACACCAAAGTGATACTGTCCAAGTTGGCAGACACGTACTTGTTGACCTATATTAGTCGTGAGCGGATCTCCTCCTCATATTCTCTGAAAACACTCAGTGAGCATGGCTGCTCCTCTGAGCTGCGCCACCGACTCCATTATGTGGTGCAGCTGCTGCAGCACTACACCAAAAcataaatgaaccaaaaaaaatgactaaaacctGAAAGGTCTAGGACTGAAACCACATCTGGAGAAGCTTGCATCTTGGCACAAAAGTTCTCCCAACCTATATTCTGGCCTCCTTGGACTTATGGTGCActgttttggattttgttttcttttctatgtCACACTGACACTACCAGCTTGACTTCACAATGTACACAACAAAGTGACAGGGAGATGAAGAGAACTTGTGTGACGAGGATGAGGCTTTGTGTTTTGATCACCTGCCTTCCCCTTTATTTAATAGagacttttatttcacttcaaGGTACAAATCATGTGTGGAATGCTGGTGATGCTAAACATTTTAAGCAGAGtaatttagttttaaaactGGTGGGGCTAGTAGTTGAAATCTGCGGCTGGACCGGCTGTAACTCGTGTAGAGGTGTAAAGGGAGAGTAAAGTGCCTTTCTGAGGGATGTCTTCTGGGTTGTGCAATAATGGCCCTTCTGTATCTTATAAGCTTAAATAACAAAAAGGTATCAGAAAGGGCTTGTGTGGTGgagcctttattttttttgctttcagtttGATTTCGATTGTGTCTAAATGGATGGAGGTAAGCACTACAGACACTTGCTATAAGCTTTTTGCCTGGTTCAAGATATTAGTCATGTAATATCCTCTATCAGATGAGagacaaaatgtttttcatttgtgcCTCCAACTGTTTACGTCGTGACTTCCACCATGTGGCATTGTTCTAAATACTGTGACACtgactgtaaaatgttaaagaaataagtattggtttttcttttcatcCCACCATTGTGAGTTATATTTTCGGGCAGATTTTTTGGCACgtgtatttgtttatatttatttattttttatttatttatgtaactcCATGGTGTTATCACTGTGTATGTTCAATATCACTTTTTTATGTATTGGTATCTTGGAATCTCGAGGAGGGGTGAATAAAGTTTGTTGAAATGCA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84331 lncRNA upstream 45141 25923952 ~ 25928740 (+) True G71163
TU84208 lncRNA upstream 71922 25898135 ~ 25901959 (+) False LOC113539772
TU84503 lncRNA downstream 59726 26039182 ~ 26039383 (+) True G71322
TU84510 lncRNA downstream 149163 26128619 ~ 26128826 (+) True G71329
TU84555 lncRNA downstream 226102 26205558 ~ 26205786 (+) True G71373
TU84556 lncRNA downstream 228864 26208320 ~ 26208544 (+) True G71374
TU84559 lncRNA downstream 238670 26218126 ~ 26223996 (+) False LOC117597118
XM_026935822.2 mRNA upstream 9723 25954956 ~ 25964158 (+) False cacybp
XM_026935821.2 mRNA upstream 9723 25954979 ~ 25964158 (+) True cacybp
XM_026936184.2 mRNA upstream 19982 25951154 ~ 25953899 (+) True mrps14
XM_026935816.2 mRNA upstream 71875 25898027 ~ 25902006 (+) True LOC113539772
XM_034303955.1 mRNA downstream 63467 26042923 ~ 26124146 (+) True rasal2
XM_034303953.1 mRNA downstream 77467 26056923 ~ 26122574 (+) False rasal2
XM_034303954.1 mRNA downstream 77467 26056923 ~ 26117501 (+) False rasal2
XM_034303950.1 mRNA downstream 77468 26056924 ~ 26124146 (+) False rasal2
XM_034303951.1 mRNA downstream 77468 26056924 ~ 26124146 (+) False rasal2
TU84209 other upstream 72038 25898135 ~ 25901843 (+) False LOC113539772
XR_003404013.2 other upstream 92772 25707827 ~ 25881109 (+) False tnr
XR_003403979.2 other upstream 1102618 24859026 ~ 24871263 (+) False kif2c
TU83028 other upstream 1863992 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 2653538 23318504 ~ 23320343 (+) True G69509
TU84572 other downstream 249308 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 308834 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other downstream 308834 26288290 ~ 26292784 (+) False zgc:66427
XR_004578101.1 other downstream 308836 26288292 ~ 26292784 (+) False zgc:66427
XR_003404060.2 other downstream 308838 26288294 ~ 26292784 (+) False zgc:66427

Expression Profile