RNA id: XM_026936914.2


Basic Information

Item Value
RNA id XM_026936914.2
length 5675
RNA type mRNA
GC content 0.49
exon number 40
gene id myom1a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22776639 ~ 22805934 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTCACTCCAGCATTATTTTTGGCCTCTGCGCTCCCGCACTCCGCTCCGCCGCCCCGCACCGCACCGCACCGCTGCTGTGCCCGGATTCTGCCCACTTTAGGAGTAGAGTCGcttctgtctcactttttttccccctgcaaAATTTGGAGTTTGTTAAACTGTGAGTGCACCTAAAGCAGCAAATCGAGAGGGAACAGGCCTACGGGACTTTCAGAAATCGAGTGCAAGTCAATCCAAGATCCACTCAGGATGTCAGGATCCATACAAGTGcaacaggagcagcagcagcggaATCTGGAGACTCGTTATGAAAGCAGCTACCACCAAAGCTCCCTGTCGTCCTTTAGACACCACTCTTATGCAGCTCATATGAGCAGCATGGGGGTGCAGGCTTCAGGTGAAAAGCAGGAGAAGAAACTGAGCTCCATCTCCAGGCTGCATACTTCAACGAAGAAGCAGGAGAAGAAACTGAGTTCCACCTCCAGGGTGAAGTCTTCAAGTAAGaagcaagaggaaaaaaagacttcCTACGCCAGGGAACACAAGTGCGCCTGCCTGGCACTGGACAAAGAGGAGAGTGTCGTTGGATACGTGGTGCCTGTTTGTAGAAGCAGTTATTTAGCCACACAGGATCTGATGGAGAGCCaggaggaggtgaaggaggaggGTCTGGGCTACGTGGTCATGAGGAACCTCTTCTCAAGAGACACTGAGTACCAGCTGAAACTGGTGAAGAAGAGCCGTAGCACGACTGTGAGGGAGTCTGCAGAAAAACTGGCCCTTAGCAAGAAGATTGAAGAAAAGCATGAGTTCCAGAGGAAGCTGAACGCGGACAGTCTGACTCATCCTCCCGAGTTCATTGTGAAGCCGCGTGGTCAGACCGTGTGGGAGGGCAAGAGTGTGACACTACACTGCACTGTGGCTGGCTGGCCCAAGCCCCGCGTGGCCTGGTACAAAAATAATGTGCTGATCGATGCAAAGGCTCACTCTGAGAAGTACACTACAGAAAGCAATTACAACATGCACTCTCTGGAGATTAAAAActgtgatttcagtgacacGGCTGAATATCGCATCTCAGCTCTCAATGTGAAAGGCGAGAGCTCTGCCTTTGCCTCGGTCATCATTAAAAGATTTAAAGATGAAGAAGTGACTGAAAGACCCCATGGATTCAGTCCTGAACATGGCGTCACCTTCAGGACCACCATTATTGATAAGTTTGGAGTGGCCTTCGGCCGTGAAGGAGAGACCATGAGTTTGGGCTGCACTGTCATCGTCTATCCCACTGTGAAACGCTATCAGCCTGAGGTGCTCTGGTACAGGAATGGTGTGGTTCTGGAACCATCCAAATGGGTGCAGATGCACTGGAGCGGCCAGAGAGCCACACTCACTCTCATCCACCTCAACAAAGAGGACGAGGGACTTTACACTCTGCGCGTCAACACCAAGTCAGGCTTCGACTCTCACTCCGCCTTTGTGTTTGTCCGAGatgCTGACGTGGAGGTTGAAGGCGTCCCTGTTGCCCCTCTGGATGTGAGGTGTCATGATGCTAATAAGGATTACGTGGTGGTGACCTGGAAACAGCCTGCGGTTGAGGGCAGCAGCTCCATCCTGGGCTACTTTATAGACAGGTGTGAGGTTGGCACTCAGCACTGGATCCAGTGTAATGACACACCAGTAAAATATGCCCGTTTTCCAGTCACCGGGCTCATAGAGGGGCGCACTTACATTTTCCGGGTTAGTGCTCTGAACATTGCCGGGGTGAGTCACCCTTCTCGTGTCTCTGACCCTGTAGTTGCCATGGACCCATCTGACCGGGCCCGTCTTAGAGCTGGTATTTCCGCTCCATGGACTGGTATGATTAAATTCACTGAGGAAGATTCCACAGttggTGTAATCCCTGGGTCTCCTACTGATCTGGCTGTGACTGAGGCCACTAAGAGCTACGTGGTGCTCAGCTGGAAGCCTCCTGTGCAAAGAGGACATGAAGGAGTTATGTATTATGTGGAGAAGTGTATGGTTGGCACAGACACCTGGCAGAGAGTGAACACTGGGATGCCAGTGAAGTCTCCTCGCTTTGCCCTTTTTGACTTGGCCGAGGGCAAATCCTACACCTTCCGTGTGCGCTGCTGCAACTCCGCAGGTGTTAGCGAGTCGTCTGAGGAAACCGGAGCCACGACTGTCGGGGACAGACTGGACCTGCCCTCAGCACCAGGGCCTGTCGTGCCCATCAGGAACACAGCCTCCTCTGTTGTGGTGACCTGGGGGGCTTCTAAAGAGGCCAGAGAGCTTGTGCGCTACTACGTGGAAGTCAGCGTCGTGGGCAGCAATGTGTGGGTGCCATGCAACAACAAGCCGGTCAAAGACAACAGGTTCGTGTGTCACGGTCTGAACACGGGAGACACCTGTGTGTTCAGAGTGAAGGCTGTGAATGCTGCTGGCTACAGCACTTATTCCAGCGAGTCCGAATCCTGCCTTGTAAAAGCAGCCATTGAGGTGTCTTCTCCTCCCTCTGCTCTCACTGTGGTGGAGCATGTTCGTGACTACATGGTGTTGAGCTGGCAGGCTCCTGCCAAAACTGGAGGAGCTGATATCAGGGGCTACTACCTGGACTACAGGAGCGTTAAGGGCAACGTCGTAAGCAAGTGGCACGAGATCAACACCAAGGCTGTCACTGGAACTACCTATAAGGTGGAGAACCTGAAGGAGAATGTATTGTACCAGTTCCAGGTTCGTGCAGTTAACCAGGCTGGTATTAGCGAGTCCTGCATCACCAGTGTTGCCTTTGAGTGTAAGGAGTGGACTGTTGCATTGCCAGGCCCTCCTCATGGGCTTCACATGCTGGAGGTGAGAAAGGATTCACTGGTACTGCTTTGGGAGCCACCCACGTTCAGCGGCCGCAGCCCCATCACCGGCTACTATGTGGACATCAAGGAGGGCAGTGGCAGATGGAGAGGAGTTCAGGATAGGTCCACAAAGAATACATTCTTGCAGATATCTGGCTTAAAGGAAGGTGCCTCCTACATACTGCGTGTCACTGCTAAGAATATTGCAGGTGTTGGTGAACCCTCCAAAGCTACAGACCCCATCGTCGCTCAGACTCGCCCAGGCACTAATGAGATTGTGGTCGATGTGGATGACGATGGCGTGATCTCGCTGATCTTTGAGTGCTCTGAGATGACCGAAAGTTCTCAGTTTGTGTGGTCAAAGAACTACGAGGCTCTCACTGATACCTCCCGTCTCACTATCGAAACAGTCAAGGGAAAATCCAGAGCCATCTTTAATGATCCTTCACTGGAGGACCTGGGCATCTACTCCTGTGTTGTCACCAACACTGATGGAGTTTCTGCCAGCTACACACTGACAGAGGAGGgtCTGAGGCGCTTGTTGGAAATCAGCCATGACCACAAGTTCCCCATAATTCCTTTCAAGACTGAAATGGCTGTTGAGCTACAGGAGAAAGGACGTGTACGTTTCTGGGCGCAGCTTGCTAAGTTTACCTCCAATTGCCAAGTGGAGTATGTTTTCAATGATAACATCATTACCCAAGGAAAGAAATACACCATGAATTTTGACAAGAACACTGGCATTATTGAGTTGTTCATGGACTCTTTGGAAATCACTGATGAAGGAACCTTCACGTTTAACCTTGTTGATGGCAAAGCTACCGGTCGTACCAGTTTGGTGCTTATTggaaaagAGTTTGCTGAGCTTCAGAAGAAGTCTGAATTTGAGAGAGCAGAGTGGGTCAGGAGGCAAGGTCCTCACTTTGTGGAATACCTCAGTTTCGAGGTCACCCAAGAATGTAATGTGTACCTAAAATGCAAGGTAGGAAATATCAAAGCTGACACCGAGATAACCTGGTTTAAGGATGGAATTGAGATTGCGGAGGATGACGAAGATGCTCAGAAAATTGGCATTGCAGATGGCGTGCTATCCTTCAACATTGGCAAGCTtgttaaaaagaatgaaaaagaagtgaaaaagaaacCTGCTGCTGAAGGAAGCCCAACGAAGCCCAAACTTTCAAAGAAAGATGCAGGTGTTTATGAGGTGACACTGTGGGATGAGAGAGGAAAGGATAAGACTTTGCTGGATCTGACAGAAGCAGGTTATAAGGCCGTTTTGAAAGAAATGTTCAGAGTTATAgCCCACTCGTCTACCGAATTGAAAGTTCAGAGCACCGAGCATGGAATCATCCTCTACACGTTTGTCGTGCATCACACAGAGGAGCTCCCTGTTGGCTGGTTTCACAAAGATGGCAAGATTTCATACTCAGACAGAGTGCAGTGTGGAGTCACAGGAGAGCAGCTGTGGCTGAAAATCAACGAGCCCACAGACAAGGACAAGGGCAAGTATGCCATCGACATCTTCGACGGTGAAGGCAGCGTCAGGAGAGTTCTTGACCTCACCGGCCAAGCATGGGAAGAGGCCTATGCAGAGTTCCAGAGGCTGAAGGCTGCCGCTATTGCAGAGAGAAACCGAGCACGTGTGATTGGAGGCCTGCCAGATGTGGTCACTATCCAGGAGGGCAAGTCTTTGAACCTTACCGGCAATGTGTGGGGCGACCCTGTGCCTGAAGTCAGCTGGCTGAAGAATGACAAAGAGCTGCTACCTGATGATCACATCATGCTCAAGTTTGAGCACGGCAAGTTTGCCAGCATCACCATCGCGGCAGTCAGTTCGACTGACTCAGGCAAGTACGCCCTGCTGGTGAAGAACAAGTACGGCACAGAGGCTGGCGAGTTCACCGTCAGCGTCTACATACCAGAGGACGATGCTGAGAAGAAAGAGTAGAAGAGAAATACGGGAGCTGCAGGAGAACACAGGGGCCGTGATATGACCAGTGTGCATCCTACAGCATTTTACTCCAAAGCGTGTGCAACCTCCGTAcgtcataaacacacagacacattaaaGCTCCTGGCCAATTAGTAGTAATAATTAACACCTCATTaacaattaacattaataatgaacaaCTGTTTGTGAAAGGCAAACATATCAATCATGCTCAGTGTGGTAATCTAGATTAGCACCAGATCTAAAACACTTACATGGCACATTCAGTACTCAGCTTTAATCAGCCGCTTACCCTGGATTCCTGAGAAAACCGTTTGAAAAGGTGAACATAGTTGGAAATGAAATGCTTTAAACGTTGCCATATTCATACATAAATCTAGCACGTGCCtttactgttttaatattttatttctgtttgtattatttgtgtccatattatttcctgttttaacTGAAATGTTACCTACAGGTCATCCATTTATGATTGAAGATACAGTAATCTTGAGAAACAGCTCAGCTAGGAGAATTAACTCTTTTTGCTTAAATGTATTCATCATAATAGTACTAAAAGGGAAACTCTTGgaaattattaaataagaaagCCAGCACATTGTCGTAGTGTAATATCTTGTAGCTCTGTAGCTGGATTTTACGTTACACTAGTACTATATGGATGTGCTTCAATTCTATGGCAGTCTGTGTGAAGCAAAAGGCTTTCAAGGTTATAGTCTGTCTGTTTATATCTGTCTGACATATTGATGGTCTAATGTCACCATGCATATGTCTTAATGATAGAAACCAAAAGACTGTTATGTGACGACCACAAATAAAGCcttgcaatgcaaaaaaaagtcttttgttCAGAAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82061 lncRNA upstream 124192 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 249083 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 379538 22392839 ~ 22397101 (+) True G68954
TU81789 lncRNA upstream 388894 22383094 ~ 22387745 (+) True G68955
TU81775 lncRNA upstream 531814 22244588 ~ 22244825 (+) True G68947
XR_003404049.2 lncRNA downstream 120876 22926810 ~ 22938741 (+) True LOC113540593
TU82192 lncRNA downstream 196064 23001998 ~ 23004102 (+) True G69294
TU82369 lncRNA downstream 478620 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 485476 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 525099 23331033 ~ 23331529 (+) True G69514
XM_026936082.2 mRNA upstream 1885 22770973 ~ 22774754 (+) True bag1
XM_026936922.2 mRNA upstream 7568 22766263 ~ 22769071 (+) True chmp5a
XM_034303351.1 mRNA upstream 19310 22749865 ~ 22757329 (+) True oprk1
XM_026936311.2 mRNA upstream 38872 22702979 ~ 22737767 (+) False atp6v1h
XM_026936107.2 mRNA downstream 2928 22808862 ~ 22837839 (+) True lpin2
XM_026936106.2 mRNA downstream 6686 22812620 ~ 22837839 (+) False lpin2
XM_026936345.2 mRNA downstream 193977 22999911 ~ 23038154 (+) True yes1
XM_034303646.1 mRNA downstream 248566 23054500 ~ 23103788 (+) True LOC113540574
XM_026937129.2 mRNA downstream 299689 23105623 ~ 23109703 (+) True si:dkey-32m20.1
XR_004578015.1 other upstream 1014338 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 512570 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1302861 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2053092 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2901893 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3092201 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile