RNA id: XM_026936922.2


Basic Information

Item Value
RNA id XM_026936922.2
length 1117
RNA type mRNA
GC content 0.43
exon number 8
gene id chmp5a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22766263 ~ 22769071 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAGGAATCGGTTCCCTCGCGAGTCTCCCGGGCAGCTTTCAGCTTTGACCTGCAGCAGGATCAGGGTGTCGCTAACAGAAAAATGAACCGGCTTTTCGGTAGAAGCAGGAACCAGGCGCCTCCCGGCCTTTCGGATTGTATCGGAAATATCGATGCACGAGCCGAGGTGATGGAGAAGAAGATAGCGAGGATCGACGCCGAGCTCATCAAGTACAAGGACCAGATGAAAAAGATGAGGGACGGCCCGGCTAAGAATGCAGTGAAACAGAAGGCAATCAGAGTGCTCAAGCAGAAGAGGCTATATGAAAGCCAAAGAGATCAGCTTGCCCAGCAGTCCTTTAACATGGAACAGGCCAACTACACCATTCAGTCATTAAAGGACACCAAAACAACAGTTGAAGCTATGAAGATTGGagcaaaagaaatgaaaaaagccTATAAGCAAGTGAAGATGGATCAGATTGAAGACTTACAGGACCAGCTTGAGGACATGATGGAGGAAGCCAGTGAAGTGCAGGAGGCCCTGAGTCGCAGCTACGGTACACCAGACATTGATGAGGATGAACTAGAAGCAGAGCTGGATGCCCTCGGAGATGAGTTACTGCTGGACGATGACAGCTCTTATCTGGACGAAGCCTCGTCTGCACCCTCCATCCCAGAGGGCATGCCCAGTGACAGCAAAACAAATAAGGATGGTGTTCTGGTTGACGAGTTTGGGTTGCCGCAGATTCCAGCTACATAGACCGGGATGAACACTGCAGGATCTGTTTCATGACTGAAgattatttcagtatttttgtaCATGTGGCATTCAAGGGTAGTGTACCAAGGAAAGCTTACCTAATGAGTTAATGAAGCTTTTACTAAGCAAGCATGTGGCCTTGTAATTCTTTAGTtccattaatatattatttaagagtgtatatttttcacacattgacaaatatagaaaatagttttgccattatattataattattattattattattacaattattatttaatcatcatcatcattatcatcttCAGTAGCGGCAACAGCAGCAGCCGCATCCATATATATATTGTGACATTAGATCATTAATGAATAAAgcacaaaaatgtacaaatgaa

Function

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K12198 CHMP5, VPS60; charged multivesicular body protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82061 lncRNA upstream 113816 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 238707 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 369162 22392839 ~ 22397101 (+) True G68954
TU81789 lncRNA upstream 378518 22383094 ~ 22387745 (+) True G68955
TU81775 lncRNA upstream 521438 22244588 ~ 22244825 (+) True G68947
XR_003404049.2 lncRNA downstream 157739 22926810 ~ 22938741 (+) True LOC113540593
TU82192 lncRNA downstream 232927 23001998 ~ 23004102 (+) True G69294
TU82369 lncRNA downstream 515483 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 522339 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 561962 23331033 ~ 23331529 (+) True G69514
XM_034303351.1 mRNA upstream 8934 22749865 ~ 22757329 (+) True oprk1
XM_026936312.2 mRNA upstream 28496 22702979 ~ 22737767 (+) False atp6v1h
XM_026936082.2 mRNA downstream 1902 22770973 ~ 22774754 (+) True bag1
XM_026936914.2 mRNA downstream 7568 22776639 ~ 22805934 (+) True myom1a
XM_026936916.2 mRNA downstream 7569 22776640 ~ 22805934 (+) False myom1a
XM_026936107.2 mRNA downstream 39791 22808862 ~ 22837839 (+) True lpin2
XM_026936106.2 mRNA downstream 43549 22812620 ~ 22837839 (+) False lpin2
XR_004578015.1 other upstream 1003962 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 549433 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1339724 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2089955 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2938756 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3129064 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile