RNA id: XM_026936923.2


Basic Information

Item Value
RNA id XM_026936923.2
length 1313
RNA type mRNA
GC content 0.45
exon number 8
gene id trmt10a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20307130 ~ 20314066 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCTAAATGTGACGTCCAGTCCCTCACAAACATGGCGCACAGCTGATGACGCTCTTTCAACACCGCCGGCGTTTTTAAATGACGTAGACACGAAGCATGCAGCCTGGTTGGAAATAAGGAATTAGCAGTGGCATCATGTCCTCTGATGCAGTCAGTGATTCCCGAGCTGATGAAAATGAGCAGGAGGTCCAAGGTGGAGGAAATGAAACACTgtcaaagagacagagaaagaaacttCTCAAACAACAGCAATGGGAAGAACAGAGAGATCTGCGCAAGCAGAAGCGCAAGGAGCGGAAACAGCAGAGGAAATTAGAAAAACAGGCGCAGGCTGAGGACAGAACAGACTGTCCTGACAGGAAGCGTTTTCGCAAAGAGGCAGAGCCCAGTCCTCTCCGTCTGGTCATAGACTGCAGCTTCGACAACCTCATGATGCTCAAGGATGTAAAGAAACTTCACAAGCAGATCCAGAGATGCTATGCAGAGAACAGACGAGCAGCACACCCAGTCCAGttttatataaCAAGCCATGGTGGGCAGTTGAAACAAAATATGGATGAAATTAACAAAGGCTGGGTCAACTGGAAGGATGTCCATATCAAGTCAGAGCATTTTCATGAAGTCTTAAGCAAAGAGGATCTGGTGTACCTCACCTCTgattcacccaacattctccaGGAGCTTGATGAGGCCAAAGCTTATGTGATTGGAGGACTGGTGGACCACAACCACCATAAAGGAATCTCTTTTAAACGGGCTAAAGAGCTTGGAATCGCTCATGCTCAACTTCCACTGGGCAGTTTTGTCAAGATGAACAGCCGCAAAGTGCTCGCCGTCAACCATGTGTTTGAGATCATGTTGGCATATCTGGAGAAACGTGACTGGCAGGAGGCCTTCTTCACCGTCCTGCCTCAGCGCAAAGGAGCTATACCTGTGGGCCAAGAGAACAAACAGGAGCAGGATGAGGACGAGGATGAGGAGGACTCCGATACATGTGAGCCAGGGACACAAAACAATGAAGATACAAAGGACCAAAGAAATGGCAAACAGGAAGAACATGAAACTCAGCAAAACCAGTCAGATTCATGTGAACGGACTGCTGTGTGAGAACAAATGactttttatgttaaaaatatttatcttttttttgtgccaaGACTTGGAATGACATGTGTTGGGAGAAGTTTCTGTTTTGCTTACTAATACCTAAGTTATTGATAATACTGCCATTTTTGTTTCAAGTCATAAAAGTGATTGAGATCTGAACATTTCTCTGCCAATAAAGTTGAGATTAGATCTCCTGCcaatttta

Function

GO: NA

KEGG:

id description
K15445 TRMT10, TRM10, RG9MTD; tRNA (guanine9-N1)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80393 lncRNA upstream 31455 20250058 ~ 20275675 (+) True G67827
TU80206 lncRNA upstream 239965 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 240092 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 341242 19962599 ~ 19965888 (+) True G67642
TU80554 lncRNA downstream 166534 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 321282 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 378197 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 378197 20692263 ~ 20693111 (+) True G68070
TU80850 lncRNA downstream 550812 20864878 ~ 20895955 (+) True G68192
XM_026936145.2 mRNA upstream 9984 20289797 ~ 20297146 (+) True c4h4orf54
XM_034303346.1 mRNA upstream 35899 20221888 ~ 20271231 (+) True mllt3
XM_026935811.2 mRNA upstream 35899 20227931 ~ 20271231 (+) False mllt3
XM_026935810.2 mRNA upstream 35899 20227932 ~ 20271231 (+) False mllt3
XM_026936481.2 mRNA upstream 140881 20159613 ~ 20166249 (+) False hacd4
XM_026936084.2 mRNA downstream 4371 20318437 ~ 20332200 (+) True nectin4a
XM_026937181.2 mRNA downstream 19612 20333678 ~ 20345681 (+) False coro1b
XM_026937182.2 mRNA downstream 19953 20334019 ~ 20345681 (+) True coro1b
XM_026935887.2 mRNA downstream 35362 20349428 ~ 20351877 (+) False si:ch211-119e14.1
XM_026935884.2 mRNA downstream 35363 20349429 ~ 20351877 (+) True si:ch211-119e14.1
TU80337 other upstream 152359 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 206032 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 478240 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 478748 19828311 ~ 19828382 (+) True trnah-gug_4
TU79253 other upstream 1448478 18856456 ~ 18858652 (+) True G66864
trnaa-cgc other downstream 38348 20352414 ~ 20352485 (+) True trnaa-cgc
TU80896 other downstream 706192 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 1013280 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 1315010 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 1315010 21629076 ~ 21639890 (+) False mettl4

Expression Profile