RNA id: XM_034303627.1


Basic Information

Item Value
RNA id XM_034303627.1
length 5131
RNA type mRNA
GC content 0.46
exon number 19
gene id gc2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13705417 ~ 13719454 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTCTCTTGgattttaattcatgtgaaatgTTGGTGGCCTGCAGGTTTACGCTTCATGGTTGAGGATAAGGCGCTGTGCAATTGATCATCCAAAATTGCTTTATCAAACAGAATTGAATTATGGGTAGACTCCAACAATGACACTTCTGATGTGACACCTAGTGGGCTCCAGAGCACACCAACCTTCCTGAGCCGTAGCCCTGAGATGCGACGGCGGCTCTGTGCCTTCTATAATTTACCACCAGAATGGGCCAGCCAAAGACTCCAGACCAGTGATCAATGTTCATCTCACCCCCATCAGTATGGCCATCTCTCTTCCTGTTCAAATTGGCACTTCTGGGCCTCTGTAATCCTGTTGTGCCTCCTCTATCCTGTGTCCACTGCTGCTGCTATCTTTCGAGTAGGGGTGGTCGGGCCATGGTCCTGTGACCTACTCTTTGCCAAAGCTTATCCCAGTGCAGCAGCACGACTAGCTGTAAGTCGTATCAACCAGGACCCATCTCTCTATCCTGGGGTCACTTTTGATTATGTCATCCTGGAGGAGGATTGTGAGACATCGCAGGCTCTCTCCCACTTCCTTGGATACTATGTGCGGGCGTCTGCCTTTGTTGGGCCGGTCAACCCAGGTTACTGTGACACAGCATCCATGCTGGGGAAAAGCTGGAACAAAGCTGTGTTCTCCTGGTCATGTATTGGCCATGAGCTGGATGCCAGACGCAACCACCCTACCTTTGCCCGTACTATGCCCCTGCCCACGCTTGTGTTGCTGCATCTCATGCGGCACTTCCGCTGGGCTCACGTGGGTATTGTTTCCTCGGGTGATGATATCTGGGTAGAGACTGCAAGCAAGGTAGCCAGTGCTTTGCGCAGCCATGGTATGCCTGTTGGCATAGTGGCATCTATTGGGAAGGACGTGGCCAGCATGCGCAAGACTCTAGCCAAGGTCAAGAGAGTAGAAAACCTACGCTTGGTGGTCCTCTGTATGCATTCAGTCTTAATAGGGGGTAAAGATCAGCAGATGCTTCTTGAGATGGCCTATGATATGCGGATGACAGATGGCTCCATGGTATTTGTGCCCTATGACACTCTCTTGTACAGCTTGCCCTACCAGAACCTTTCTCAATACTTCCTTCCCAACAATGGCAAATTGCAGCACGCTTATGACGCTGTGCTTACCATAACTGTGGAGTCTCCAGAACGGCACTCATTTTATCAAGCTTACATTGAGGCACAGATGGGAGGAGAGGTTCCCAAGAACATTAAACCCCACCAGGTGTCCCCTCTGTTTGGTACCATCTATTCCTCCATCCTGTTCATGGCCCATGCCATGCAGAGTTTGAGAGCATCAGGACAGTGGATGTCTGGCGATAATCTGGCCCATCATGCACGTAACCTGACATTTATGGGCTTCAGTCACCCCATCCGCACAAGCCTTTCAGGCTTGGGTCTACTGGATTATGTGGTCCTGGATACAGATGGCTTATCATGGGAACTGAGGCCTTGCTACCGCAtagagatggagacagacatGGTACGCTTCCTTGGTCAGTCCATTCACTTCCCCCAATCGGGGCCACCTAAGACTGACTCCAGGTGCTGGTTCACACAAGGAATCATCTGTAGTGGAGGCGTGGATCCTTTCcatctgattattttcttcatcTGTGTCTTTCTATTAATCTTCTCCTTTGTTGCTTCTGTTTACTTTATAAGGCGACGACTCAATCAGATTCAATTAGTCCGGGGCCCAAACAAAATCCTACTGACCTTGGCTGATGTCACCTTCATCAACCCATCACTGAGTAACAAGAAGATGAGTTTGGAGGAAAGCAAGACCAGCGATACaagaaaaagcatctcagagcacaGCCACAACTCTCCATTCTCTAGTCAATCTCCAGCCACCTATGAGAATTCAAATGTCGCTATCTATGAGGGAGATTGGGCTTGGCTAAAAAGACTTCCCCATGGAAACTTTCGGAGTATCAACCCAAGTACTACTGACGTGTTTGAACTGATGAAAGACATGAGGCATGAGAACGTTAACCCTTTCATGGGCTTCTTTCACGACTGTGGGGTCTTTGCCATAGTGACGGAGTACTGTTCCCGTGGCAGCCTGGAAGATCTTCTGCATAATGATGATGTCAAACTGGACTGGATGTTCAAGTCTTCCCTCCTGCTGGACCTCATTAAGGGAATGAAATACCTCCACCACAGGAATGTATATCATGGAAGGCTGAAGTCCAGAAACTGTGTGGTTGATGGGCGTTTTGTGCTCAAAGTAACTGACTATGGCTACAATGAAGTGTTGGAGTCCCAGAGGTTTCCATATGTAAAGCCGCAACctgaggAGCTGCTGTGGACAGCCCCTGAGATCTTGAGAAGTTCCTTTCCAGGGCTGAAAGGCAGTCTGCCAGGGGATGTATACAGCTTCTCCATTATCATGCAGGAAGTGGTGGTGCGAGGGCCGCCTTTTTGCATGTTAGAGCAGTCTGCTCACGAAATTGTTCAGAAGGTGAAGAAGCCTCCACCATTGTGCAGACCCACTGTATCTCCAGACCACGCTCCACTTGAGTGCATCCAGCTAATGAAGCGGTGCTGGAATGAGCAGCCTGAGAGGAGACCAACATTTGATGAAATCTTTGATCAGTTCAAGAACATAAATAAAGGGAAGAAGACTAACATCATAGACTCCATGCTAAGGATGCTGGAGCAGTACTCCTCTAACCTGGAGGAATTGATCAGggaaaggacagaggagctAGAAATTGAGAAACAGAAGACTGAGAAACTTCTCACACAGATGCTGCCACCGTCAGTGGCCGAGGCTCTGAAATTGGGAAGCACAGTGAAACCGGAGTACTTTGACAGTGTCACTGTCTACTTCAGTGACATTGTTGGCTTCACTACAATTTCAGCCAACAGTGAGCCGATTGAGGTGGTGGACCTTCTTAACGACCTCTACACACTCTTTGATGCAATCATCAGTAACCATGATGTATATAAGGTTGAGACAATAGGTGATGCCTACATGGTGGCGTCAGGTTTGCCTGTGTCCAACGGGAACCGCCACGCAGCTGAGATTGCCAACATGGCTCTGGATATCCTCAGTGCTGTGGGGACATTTAAAATGAGGCACATGCCTGATGTACCGGTCCGAATCCGAATAGGACTTCACACAGGTTCTTGTGTAGCTGGTGTTGTCGGCTTGACTATGCCCAGGTACTGTCTGTTTGGAGACACAGTCAACACAGCTTCTAGAATGGAGTCCACAGGGATGCCATATCGGATTCATGTTCATTCCAGCACAGTTAAAATCCTGTTGGCACTGAAAGCAGGATACAAAGTCCAGTTGAGAGGCAGGATTGAACTCAAGGGCAAAGGCACAGAAGAGACCTACTGGCTCATTGGGAGAGACAGTTTCACCAAACCACTCCCTGTCCCTCCTGAACTAAAGCCAGGGCCTGAGAATAAGGACTTTAAATTGATGCTTCAGAAAGCAGTGAAGAAGATCTCTGCTGTGCGTCAGGTGGCCCAGGTTACTCTGGCTGATGAAGACAACATCATGATACACCATCACTGACAACCCTTCACCTGTGCTCTTTTGACCTGTGCACTTGTCACAGGAATTTCATACAGTTAACAAATGAAACCAGGAAgtcctttttttctatttcagcCTTCTTCTGTTTCTCCTTTGGTCTGGTCAAAGTGGTTTGAGCTCTGGATATTTACTACTGCCTGTAGTTGGGTTGGTATGTTTCTAAAATCAGGACTTCTACTTTATTATTAATGGCTCCTGTTTGCATTCGAGATTGCATGACATCATGTGCATTTCAGAGACTTTCACTGTAACATGTTGGGACTGAAtgaactttaaataaattaaactgctACAAGTAACACACACCTACCAGGAAGGCAGGTGCTGAGTGGAATATTCCAGCACTGTCTCTCCATCTTGAACGCCATCCTGAGAGATTACAGGCCTATTCTGAATATGAAGCACCTTTGTGACACAAGCCAAAGTCACATGAGGAACTAAAATTACCCACTGGGAATCCATTGCTCAGCAAGAGGAGGATTGGATCAGCAGCAGAGAGATAGACTGAGCcatcaacagacagacagagaagtgAGGGTAAGAGATTGGATGAGGGGATAAAAGACCTGTGTACTTTCCATTTGCATACAAATTTCAAACTCTGGTTCCTATCATCTATAGGAAAGAAATATCCTTCTCGCCTGAGGAGAAAACTTCCAAACCGGGTCCTCTTTGTCCTGGCCAGGAAATAAGGAGCAGAAACTTGGTGCATAAAAAGAAACtatatttacatgtttaaacATTCATAGAACAATTAGAGCTGAAAGCATATAGTGTCCATATCTACTAGACTGATCTACTGACATGGTGTTAGATAGACCTTAGAACTATTGCTGAAATTTTGTTCAGACAGACATATCTTAATAAGGGGTATGTTTAGCATGGACTCCCATGGATGTCATTAATGCACAAACCTTTAAGCAATGTATTGACTTTAATTGTACAGTGTCACAACAGTGATGTAAACATGTCAAATGTACagtatctgtttattttttttagccgTGTTATAACTAAAAAACTACAAAATCATAAGTATGATCATTGAAGACATGACATCAATGAATTATTCCGAATTAGATGTATTCAGATGTAATATTGAACTCGTGTATTAAGGACACTAACCACCTCCTCTGGAAGATCTGCCATCCTGCAGTGTTTAATTCAAGCCATAATCTTACACCTGATCCAACTAAGCAGATGATCAGGTGCATGAGATCTGGGTTAAGATGTGGGTTGGAACTGATCTCTGTTGGAATTGATAATCATCTATTTAGGCTATATTTGAAGCAAGGGGCTCTCAACTATTCAGTCTTTCCTAGTGCTGATCACGTCATCAAACTCCAACATTCACTGAAGGGCTTGGTCAGCCAGTTGGATCAGGTGTGTCAGCAATATGTCCTCCTAACTTTAGTCAAGAACTCTTGTTTTATCCACAACACACTTTGAAACAAAGGTGGAAAAAATAATTGATGTCAGCTTGATGCATTACAGTTAACAATAAATCTGGCTTTTATTTCAACAGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004383 guanylate cyclase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75791 lncRNA upstream 132743 13570002 ~ 13572833 (+) True G63976
TU75739 lncRNA upstream 200857 13504460 ~ 13504719 (+) True G63936
TU75682 lncRNA upstream 237850 13459362 ~ 13467726 (+) True G63898
TU75685 lncRNA upstream 288135 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 317622 13387598 ~ 13387954 (+) True G63889
TU75843 lncRNA downstream 36090 13755544 ~ 13759751 (+) True G64025
TU75876 lncRNA downstream 183987 13903441 ~ 13909459 (+) True G64049
TU75933 lncRNA downstream 292644 14012098 ~ 14012315 (+) True G64102
TU75934 lncRNA downstream 293765 14013219 ~ 14013418 (+) True G64103
TU75936 lncRNA downstream 297832 14017286 ~ 14017669 (+) True G64105
XM_026936262.2 mRNA upstream 5886 13692777 ~ 13699690 (+) True rasl11a
XM_026936263.2 mRNA upstream 5886 13692777 ~ 13699690 (+) False rasl11a
XM_026937028.2 mRNA upstream 20978 13654955 ~ 13684598 (+) False arhgap36
XM_026937027.2 mRNA upstream 20979 13658046 ~ 13684597 (+) False arhgap36
XM_026937026.2 mRNA upstream 21422 13647182 ~ 13684154 (+) True arhgap36
XM_026936675.2 mRNA downstream 4860 13724314 ~ 13738910 (+) True LOC113540276
XM_026936438.2 mRNA downstream 78726 13798180 ~ 13880674 (+) False col4a6
XM_026936439.2 mRNA downstream 78726 13798180 ~ 13880674 (+) False col4a6
XM_026936440.2 mRNA downstream 78726 13798180 ~ 13880674 (+) False col4a6
XM_026936441.2 mRNA downstream 78726 13798180 ~ 13880674 (+) False col4a6
XR_003404009.2 other upstream 143310 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 230539 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 286880 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1410453 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 2008281 11644902 ~ 11697295 (+) False si:ch211-200p22.4
XR_004578085.1 other downstream 536290 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 912576 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2303741 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2590759 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2648502 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile