RNA id: XM_026936931.2


Basic Information

Item Value
RNA id XM_026936931.2
length 1880
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC113540433
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21459111 ~ 21465823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGgatgaggagagagaaatagaagagGAGGGTGGAGGAATCAGCGCACACTGGACCCTCCACACTCCACTCGTACCGACAGGGACAAAGTTTACCTTCTGTGCGTTTTACTGCGCCTGAGGAACAGCAGCCCTGCGTCTTACTGCACTCTTTACCTTCTCCTGCTTTCCCTCGAGCATCCAGCACGGAGACATGGACTGGGACCTGGTGGACATGCTGAGGGAGGATAAGTGCGTGTCTGAGTGTGAGCTGAACGCGTCTGTGAGCACTGAGGCGGATCCGCGCAATGTGCCGCCTGAGCGCATGTCGCCTCTCCTCCCGGTCATCACCGCCGTTTACTCCGTCGTGTTCGTGGTGGGGCTGGCGGGGAACTGCCTCGTTATGTATGTCATTATCAGATACACCAAAATGAAGACAGCAACCAACATCTACATCTTCAACCTGGCTTTGGCTGATGCTTTGGTTACCACCACAATGCCATTTCAGAGTGCAGACTACTTGTTGAACTCCTGGCCATTTGGTGAAATAGTGTGCAAAGTCTTCATCTCCATTGACTACTACAACATGTTTACCAGCATTTTCACACTAACCATGATGAGTGTGGACCGTTATGTGGCTGTGTGCCATCCTGTCAAGGCACTAGACTTCCGCACACCACTCATGGCTAAGACCATCAATGTGGGCATATGGGTACTGTCCTCAGCAGCAGGAGTGCCGGCCATGGTGCTGGGGGGAACACAGACCAATAATGgCACCACAGAGTGTGCCCTGCAGTTTCCCGACCCTTATGAGTACTGGGACACTCTAATGAAAATCTGTGTGTTCGTCTTTGCTTTTGTTGCTCCCGTCCTCATCATTAGCATCTGCTACTCTCTTATGCTTCTTCGACTGCGTAGTGTCCGCTTACTGTCTGGTTCTCGAGAGAAAGACCGCAACCTTCGCCGCATCACCCGTTTGGTCCTAGTTGTTGTGGCAGCTTTTATCATTTGCTGGACCCCTATTCATATCTTCATTCTTCTGAAAGCTGTAGTGGCCATTCCTGAGACCACACCACTTATGGCTGCCTATTTTCTGTGTGTTGCTCTTGGTTACACCAACAGCAGCCTCAACCCTATTCTCTACGCATTTCTAGATGAAAATTTTAAGAGGTGCTTTAAGGACTTCTGTTTGCCAGCAAGGCGAAAGGGAGATAGAGGAGTTGGAGGGAGCAGACTAGGGAGGATTGCATCCAGGCAGTCTCCCCAGGCTGCAGAATGTGCCCCAAGGACAGCAAAGCCAGCATGACTAGCCGTGGAATTGTCCTTCATCACTCAATCTGGAAAGGAGGACTCCAACACAGTGGGACTGACGCAGGTCTCTTCTGCACTCTGATCATAATGCAACCTACAGTTGGTGTGAATGTTGGTGTGACTGTGTCACTCGATGAGATAGAGCACTGTGACAAGACTTGTTATATTACACCCTGAACATAGTGTGATAATGTGAGAGCCTGCTGAAGTCAGCTGGGAATTCTACCATCAGCTGCCAGCAATGGTTTTGCTTTGGTATAATGgtataatatatacatgtaaatatgCTTTAGTTCTGCTGACCCTTAAAAAAGTGCAGCTAGAAACATTTGATTTATCTCTGATCTCTCTGCCaatttttggctgttttgatCTCTCATTTAGTTTGATTCAGTGACTCTCACCCATGCATTCATACACTAATGTTTTGGATATAGtgcaattcattcattcattcattcattcattcattcattcattcatcttcataaCTATTTTATCCTGGTCTGAGTCAcatggatctggagcctgtcccagaaATACTGGGAGCATGTCCATCTtggggcaccatgcacacacattcacacactca

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0042277 peptide binding molecular_function
GO:0004985 opioid receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81189 lncRNA upstream 137705 21321145 ~ 21321406 (+) False plag1
TU81190 lncRNA upstream 142596 21316255 ~ 21316515 (+) True G68435
TU80993 lncRNA upstream 224853 21234025 ~ 21234258 (+) True G68313
TU80981 lncRNA upstream 249787 21205745 ~ 21209324 (+) True G68304
TU80969 lncRNA upstream 269977 21188531 ~ 21189134 (+) True G68299
TU81294 lncRNA downstream 21151 21486974 ~ 21487488 (+) True G68523
TU81417 lncRNA downstream 267123 21732946 ~ 21749319 (+) True G68621
TU81415 lncRNA downstream 288285 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA downstream 288285 21754108 ~ 21762229 (+) False LOC113540377
TU81502 lncRNA downstream 448983 21914806 ~ 21917776 (+) True G68687
XM_026936873.2 mRNA upstream 35033 21420585 ~ 21424078 (+) True lypla1
XM_026936369.2 mRNA upstream 121972 21330291 ~ 21337139 (+) True zgc:56231
XM_026936371.2 mRNA upstream 130271 21326023 ~ 21328840 (+) True rps20
XM_026936593.2 mRNA upstream 135144 21314218 ~ 21323967 (+) True plag1
XM_026936594.2 mRNA upstream 135144 21314218 ~ 21323967 (+) False plag1
XM_026935852.2 mRNA downstream 9448 21475271 ~ 21480480 (+) True chmp5b
XM_026936683.2 mRNA downstream 31130 21496953 ~ 21535633 (+) True myom1b
XM_026936687.2 mRNA downstream 31130 21496953 ~ 21535633 (+) False myom1b
XM_026936688.2 mRNA downstream 31130 21496953 ~ 21535633 (+) False myom1b
XM_026936684.2 mRNA downstream 31130 21496953 ~ 21535633 (+) False myom1b
XR_003404073.2 other upstream 131691 21327346 ~ 21327420 (+) True LOC113540699
TU80896 other upstream 425358 21020258 ~ 21033753 (+) True G68232
trnaa-cgc other upstream 1106626 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 1304340 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 1358013 20101025 ~ 20101098 (+) True trnar-ucu_2
XR_004577949.1 other downstream 163253 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 163253 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 286593 21752416 ~ 21762301 (+) False LOC113540377
XR_004578017.1 other downstream 288195 21754018 ~ 21762301 (+) False LOC113540377
XR_003404030.2 other downstream 288257 21754080 ~ 21762301 (+) True LOC113540377

Expression Profile