RNA id: XR_004578096.1


Basic Information

Item Value
RNA id XR_004578096.1
length 2456
RNA type misc_RNA
GC content 0.43
exon number 4
gene id LOC113540437
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28648324 ~ 28652425 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATATAAAGGTGTGAGTTGCAGATGCAGCGTTGTCTTCtgtacaccttctgaccaatcaggatgcgGAATGCAACAGCGCTGCGGTATAAAACTGTTTTCTTACACAACAGCCGAGATTAGTGCTTGGATATGAAGTGGTGTAGTGCACTCCATTTCCAGCAGGGAGTCGTTTGAAACACAGCCAGAAGAAGATGCTGAGGAAGAAAAGGATACTGACGAAGCCTTTTGATGAGGGTTAGGATcaggttacattttttttttttttttgaattgttgaaaagtgaaaagagaaagcgatggagtgagcgagagagtgagagagagggagagaactGTGCGCTGTTTGAATGAGATGTGAGAATGAGTGCAGTGTGCTCGAGTTACTACACCGCGGAGAAGGAGCTGGTGAGTGCGTTCACATGTCCGAAAGCCGGCGGGGACGAGCGCGCGCGGTTCTGCTGCGGCTTCAACGACATTAAATACTGCTGTGACGATCCCAACAGCTTCTTTCCCTACGAGTACGGATACATGTGGTGGCTCAGTATTGGTGCTCTGATAGGTCTGTCCGTAGCTGCGGTGGTGCTCTTGGCCTTCCtggtcactgtgtgtgttctctgcatCCTCTTCATCAACACTAAACCCAGTCGGCTGGACAGCGGCCTTCCTCTCAGCGAGCCGGGTCGTGAGCTGAGTCCTGCTCCCAGCCCTTCCACCGGACCTCAAGGTTTCCACAAACATTTCCCAAGTAGCAAACTGCACTGTGCCGAGCAGCGGGCCGAACCCGAGCGTGTGTTTCAGCCCTGCTTCAGGGTCACCGTGGCCAGAGTGAATGCTGAAGGGCCCTCGTAGGAGCCGAGTCCACTGGCAGGTGCTTTTATTCAGGCAGAGTCAGAAGCCAAGTCAAGCCCCAAGCTGAGCGGTTGAAGGTTAACGGTCCTGCTCAAGAGCTCATGAACACGAAATAGTGAACAcgaaaatgacagaaatggcGCCGCGGGATTGTAGTTGGTGGCGGAGTGGCCTGGAACCTCAGCTCAAGCACGGACTCGGAAATAGAAATTCATCTCAGCAGATTTTCTCATCATGAAACGCAGTGACAAGTCATTCATTTACAGCGAAATCTGAAAAGCTCCAGATTCTTGCTCTTACTCCCAGATCGTGAACAAGTCAGAGATATTCTACTATATTCTGCGTTATTAACCACATCTGaccttttttttgcctgttttcaGCAAGATATTCAGGTATGGAATGAGAAATGCTATAGTACATGTTACAAGTGGCTACGCTTACGCTAGTACTCATGTTTGAATTGTGATTGGTTGgcacatatttcattttaataatatttagttAAGCATTAATGTAATATACGTTACAATatatttaactgtatttaaaCATATACCACTTTTTAGATTTGGTATAAAAAGCTAAAATCATAAAATCTAATCATAAAAAAGTCTATTTCTGAACTTAtcttatagcaaaataatcttatatcttatatttatagcaatttaaaaaaaaacttttccaacgattccacagccatccgtggccgggtgaccaagagagcaaaactggccgtgcgctctgggtgggaggggcatagtCTCTCGCCGCTGTCAATCACAGGGAAACTTGTGAGGAAAGAGTTTTAGTCAGCGCAGCACCCTGCAGCACCACCGgcgcattcacactggagagaaacGAAAGCGTTTTAACTGTCAGAATAATCTCAAAACGCACCAGCGTGTGCACGCGGCAGAGAAGCCAGACCACTTTTCAGGAGTTTCAAACGTGAGAGTAATCTCCAAACACTGTAGTATTGCTCAGATTCAGCTATTTAACGACGTTTAATAGACACAAGTGTATTAACACACGTGACAGCTTTCCACGCAGATCAATGAACCTATCAAATAAAGACACATAATTATCAATTATCAACTGTAACTTTGCAATTTATATAGTTATCGACTGAATTTCTCTTGAAGTGTTCACATCACATAGtatcaatttttcaatttttttttcaaatgattgcttaaaataattatttaattaaaaaaaaattgtaatcgtaatatttattgtaatcttCCTGGAACAAGCTGAGTCGATAAACATAATAAACCTAATAAACATCACCGTATTGTTGGATATTCAGTATATAAATTCGTCATAtcaatattgtttttttctgaatggaGCTAGCCGAGACATGAGTAAGTTCTCAGACGCATCGTAACAGAGACgaagtttgtcatttttctgctgtttctttgtggcatggatgtatTTGCGTTCCTGGTGAAATGACCTGCAGCTGCATTAAGCAGTTCATATGGTTGGATCATAATAATCATCACCATAAGAATATCAGAGTATACGaaatgcatgtgtctgtgtgttattgAAATCATTAGTCAAACTTGATGTCAAGTTTTAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86223 lncRNA downstream 176553 28397661 ~ 28471771 (-) True G72726
TU86202 lncRNA downstream 264864 28343134 ~ 28383460 (-) True G72709
TU86215 lncRNA downstream 269192 28365657 ~ 28379132 (-) True G72720
TU86171 lncRNA downstream 448515 28197991 ~ 28199809 (-) False LOC117597043
TU86175 lncRNA downstream 448515 28199219 ~ 28199809 (-) False LOC117597043
TU86306 lncRNA upstream 14898 28667323 ~ 28668643 (-) True G72796
XR_004577998.1 lncRNA upstream 60609 28713034 ~ 28717955 (-) True LOC117597077
TU86345 lncRNA upstream 130498 28782923 ~ 28784140 (-) True G72824
TU86322 lncRNA upstream 135198 28787623 ~ 28791829 (-) False LOC117597168
TU86430 lncRNA upstream 179959 28832384 ~ 28833720 (-) True G72893
XM_034304008.1 mRNA downstream 5929 28632754 ~ 28642395 (-) True dcaf8
XM_034304007.1 mRNA downstream 5930 28632754 ~ 28642394 (-) False dcaf8
XM_026936572.2 mRNA downstream 20181 28619816 ~ 28628143 (-) False LOC113540232
XM_026936569.2 mRNA downstream 20181 28619816 ~ 28628143 (-) True LOC113540232
XM_026936570.2 mRNA downstream 20251 28619816 ~ 28628073 (-) False LOC113540232
XM_034304106.1 mRNA upstream 16554 28668979 ~ 28680704 (-) True scp2a
XM_026937186.2 mRNA upstream 30047 28682472 ~ 28685576 (-) True czib
XM_026937185.2 mRNA upstream 34131 28686556 ~ 28690012 (-) True uck2b
XM_026936878.2 mRNA upstream 47244 28699669 ~ 28706523 (-) True zte38
XM_026936341.2 mRNA upstream 55604 28708029 ~ 28711708 (-) True prdx1
trnas-uga_2 other downstream 411519 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 412057 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 606539 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 1023516 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 1027196 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004577984.1 other upstream 221153 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 221155 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 229902 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 496213 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 870969 29523394 ~ 29523466 (-) True LOC113540702

Expression Profile