RNA id: XM_026936939.2


Basic Information

Item Value
RNA id XM_026936939.2
length 6219
RNA type mRNA
GC content 0.49
exon number 18
gene id kdm6ba
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13116216 ~ 13198549 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGTTTCTTCCTCACCTCCCACCCAGTCACATGTCAGGAATAAACCATCCAAGTAAAATTTACAACAGCCACTGGCACGTGGAGGGGAAAAGCTGGACCTATCTCAGGCCTTGTTGCCAGGGTTACACAGGGATCTCCGGGTGCCCCCAGTCTCTCCCCGGCCATGGGAACTAGTTTGTCAGCAGTATGAGCCATTGCCCAGTGATGATCATGCCCGTTTGCACAACGGATACAATGCTGGACCGTCTGCACACCTCACAGCCCGAGCCAACCAGTTGTTAAAGTATGGTCCCACTCCTTTGCAACATAGTTCCAGGCCCATGCCTCCAATCCCAGACTTGTGGGAACAGTctcaacaacagcagcaacaaccaCCCAGGGGCCCTTACTCTCATCCTGGCCAGTTAAAACGGCCAGCACCCCCTCTGGGAGAGCACTCGGTCATCCAGCACACCCCTCTTTCCCTAAACAGGCCTAACGAGGACTGTCCCAGCCCAAGCAAGAGGAAGAGGAGTTCTGACTCAGATCAGCGCATGATAGGCACCCACCAATACTCAGGCTCAGTGGGAACTTCACTGCCCTTGCTGCAGCAGCCTCAGTCACATTATCCTCCTCTGCAAAAGGGGGCAACAACTTGGACCCCAGTAGAATGCAAGACGGACCACAATGAGTTTCAGGACTTGTGCAAACAAGACATAGGTGActgcagctacaaacagttcCCATCCTCCAAACCTTCACCCATCTCTCCACCTCCCATCACTTCCGCCAGGGGCTATGAACAAGGCCGTGGTCCTCCGCCCCAACCCCTTAAGCCTTCTCAATCAACACAATCTCTGGGGTCCTCCTCTCACAATGTCCGCCTCCACCAAACATTCCCCTTCCCTGACAGCAAGCCTTCTGCTCAGACTCCTGGGGAGCACCAGGTCATTCCCACCCACAAAGTGCATCCTTCTGGGATGAGGTCTACTGGCAGCCATGCACCCATGCCACATCCTTCATCGTCCTTGGCTGATAGAGAACGCCCTGTCCCCACACCAGCACACCACACCGCAGTGCCTTACAGCCACCCCAAATTCCAGCCCCATCCAAGGCTGGTTTCCACCACCAGCCCCTCTTCCAACAGTGGGACACAGGCCGCAGCACCTCAATGCAACCCTCATAAGCCGTGGAGGAACCAGATCAAACATGATAACCAGGCCTCAGAGCTGGGTCCTTATCGCAGATCAGTGGACTCTCAGGTTTCCTCTTCATCTCTGCAGCAACAGCAGAGTAGAACTGGGCAAAATCAGGATGAAGGCACCTCTCAGGCTCGGGCACCAGTCATCACCTCCACAATGCCTTCCTTGGAACCTTCAGGTCCTCCTTGTTCTGTGGGACTCTACAGTAGTGTGGACACTGTACCCACCATGAGCTCAGTGAACCCTACTAATGGTTCTGCGGTCAGCACTGTTAAAAGCTGGGAGACTGCAGACCCTTCAGCGCTAGTCTCAAACCCCAGTCCGACTCCATCTGCACAAGGTCTCCCACACCAGGAATATCAGAGAGCCCAATCTGGCACCACAAGCCATCCAAACCACCAACAAAAGGCAAAAATTCAGCATCAGGAACACTATCTACCCCACCAAGGGCAGGACAGACCCCATTACACCCCTAAAGTGTCCTCAGCTCCTTCCTCTCTCAGCTCAGGGTTTCAGAGATCAGGTAATAGTGTCATCACCAGCAAGTCCACTGACAACCTCTTGCAGGCTGCAAGTTCACCCCTTCATCACACACAGCCTGCAGTGTCCATCACTGTGAACACAGCCCCTCAACAACAGTCTGACTCTTTGCATCATGAACTGCCTCACCAGGCAGCCCCAGTCTTATCTCAGGTGCCACCTGCCCAAACATATCAAAGGCCATGTCATCAACCTACCATCTCTAGCCCCCAGTCCATTGAGGAAGCACTCGAAAAGCTTGATGCTGAGCTTCAGGACCATATGCGAGCtgaagagagaaggaaggaacaggaggaagaagagagaaaacacaacagggagAGTAACAAAGTAAGAAACAAGAAGTTAAATGAGGAGTCTGCAACTGAGAATCTGGAGAGCTTGCTGAAAAATAATGCTACTGATCCACCCCCTCCATGTCTGTCTCCAGCCATTACACCTTCCACGGTTTCACCCCCAACCCAGACATCTCCACCTTTTCCCTGGCTGAGCAGGGGAGGTGTGCCTACACGTCAGCTGGCAACTGGTGCAAATCCTGTAGAAAGGTCTCGACCACCTCCTCTCACCCCTCAAACAGACTATGCCCGTGaaaagcagagacagagagagcaatgGAATGCTTCGGTCACTCCTACTTCACAGAATACCTCAGGGATTCCGACATCTATATATTCCTCCAAACCTGTCCCAACAGATTcttcaaataaaacaatacagacAACCTCCTGTTCATCCAAAGTCTCTACCATGCAGAAGAGCTCTCATAACATCAAGGCTGTGGGTTCTGTCTCAAACCCTCCAAACCTGCGAGAACCCCCCAAACTCTACCAGGCTTTTCCCAGGGACACTCTACCATCTTCCTCACCAAAAGACACAAGTCAAGCCAATTTCCACAAGCAGGTAAGTGGCGGGCTAGGCAGTTTAGGCAGCACTGCCAGTAGCTCCAGTGGGGATTCAGATAGTGCCCAGTTTGAAGAGGAACCATCCGAGCTCTTGCCTGATGGTTTGGCAAACATTATGAAGATGTTGGATGAGTCCATTAAGAAGGAGGAGGAACTATACTCTGGCCAGAGTGGTGGGCAGCCTGACCCAGAGCTACCATTTTCTCTTACAATGGCACCCATTAAGAGTTATTCGTTTGCCCCTGACCTCATGCCTGCCCTGAAACAACCATCTACAGATGATTATTCAACTGACACCCATGCTAGCCCACCTGTCCTGAGTCGTCAGGGATCTTTGGCATCCCCTTGCAGCCGTACGTCTTCGCTTGAAGAAGAGGAGGATACActaaaaataatccaaaaatcTGACAGCACTGTCAGTACTCAATCTCAAGATAGTGGTGGCATCACAGGAAGTAGTTATCGCCATAGTGACTTGGCCAAGCTTTATGGACTATCAGAGGGAGTGAAGAGTGagtgtgaggaggaggaggaggaagaggcagaACAAGAAGACGATACACCTTCCTGTTCTCCACCACCTATGAGGCCACACCTACATCAGACGGGTGTGAACAGCATGTTTAAAAACTTAGCCTCTGTGCTGGAGAGGCAGAAGTATGCCTACCGTGGAGGACCATTTGGTCGACCACCTCCTTCAGCTCTGGTAGGAGTGAAGTACTCTTCATCACTTTCACTGGGCCCAGATATCTGCAGACAACAAAGCACTTCTCCTACATCAGGCTCAACCAATCACCCAGACTTTAGCCATCAAGCTCAACCCTCAATGAATTCTACCTCCGAACAAACCTATTCTCTCTCACCATCAGGATCAACaccagaaagaaaaggagatgtTATAGTCTGCCAGTCGGATCTCTCTGGATGTGAGGAGGAAGACGGATTGAGAAAGGGGCTGATGGATGAAGAAGATCCTAGTATTGTAAAGGACTCCACAGAGGTAGAGAGGAAGCCCAAGCTCACAACAATCTCAGAATCATCGCTTGCAGAGCTGGGTCGTAGTTGTGAGGTTATGCTAAATCGACACAATCTCCCCTCAATGGCATCATCAGACCACAATAAGAAACAGATGCTGAACATACctgagaaagacaggaagagagagcgGGACTGTAACCAGGAGAAGAAACACAAacgcagcagcagtagcagaaAACAtgaggaaaggaaagagaaaaagaaaaaacacagagaaaaacaagaaaatatgtCCCTGTCTTCTTCATCAAGCTCAAGCCGAAGGCACAAGGAGGGAAAACCACACAAAGAAAGAAGGGGCCACATAGACAGTCAGAAAAAGGAGCTCTGGGAGAAAGAacgagaaggagagaaaaagaaaaaaaaagaggaaggagGTGAAAAAGAGGAATGGGTATGCCGGAACAAGGAGAAGAGTTTTAAGGCAGGAAGTTCTTTACTGGATCATACATCATCTTCACCTGCATTGGGTTCTGCAGACTTTCAGAAGTTAAAGGCTCTGACAGATGGTCCACCCAAAGAGCTGAAGATTCGTCTGATAAAAGTGGAAAGTGGAGATAGAGAAACCTTCATTGCCTCTGAAGTTGAGGAGAAGAGAATTCCGCTCGGGGAGATCACCATCAAAAACACAGCCAGTGAAATCATCAGATCGTGCAAGGGTGCCCGCATTAAGGGGAAATTCAAGGAGTCCTATCTACTTCCAACTTTGTCTGTGAAACCTGTTATGACCATGGAGCATCTGATCCCACGGGAAAAGCTCAACCCTCCTACACCCAGTATCTATCTGGAGAGCAAGAGGGATGCTTTCTCTCCTGTCCTGCTTCAGTTCTGCACAGACCCCAAGAACCCCATTACTGTCATCAGAGGACTAGCGGGCTCTCTCAGACTGAATTTGGGTCTCTTCTCCACAAAGTCGCTGGTGGAGGCAAATGGAGAACATGCAGTGGAGGTGAGAACTCAGGTGCAGCAGCCAGCTGATGAGAACTGGGATCCCAGTGGCACTGGGCAAATCTGGCCATGCGAGAGCAGCCGATCACACACCACCATAGCCAAATATGCCCAGTACCAGGCCTCCAGCTTCCAGGAAAGCCTACAGGAAGAGAAAGgcagtgatgatgaagattatgatgatgaaGTTGAGAAGAAACCTGTCATTAACTCAGACAGCACAGGCAGCAACTCCACAATCTCAGGCTCGAGCTCAGAGCAGAAACCTGTGGGTAAAATCATCAAATTTGGTACTAACATTGACCTCTCTGATCCCAAGAGGTGGAAGCCCCAGCTACAGGAGCTGCAGAAGTTGCCAGCATTCATGCGTGTGTCCTCTAGTGGGAATATGCTCAGTCATGTAGGCCACACCATCCTAGGCATGAACAGTGTACAGCTTTACATGAAGGTCCCTGGCAGTCGCACACCAGGTCACCAGGAGAATAATAATTTCTGCtctgtgaacattaacattgGCCCTGGAGACTGTGAGTGGTTTGCTGTCCATGAAAACTACTGGGAATCCATCAGCAATATATGTGAGAAGCATGGAGTAGATTATTTGACTGGCTCATGGTGGCCAGTGTTGGAAGATCTCTACAGCTCCAATATTCCAGTGTACCGCTTCATCCAGAGGCCTGGAGACTTGGTGTGGATCAATGCAGGCACCGTGCACTGGGTCCAGGCTGTGGGTTGGTGCAATAACATTGCATGGAACGTGGGTCCACTGAATGCGTACCAGTATCAGTTGGCTTTGGAAAGGTTTGAATGGAATGAGGTGAAGAAGGTCAAGTCCATCGTGCCCATGATCCACGTTTCCTGGAATGTCGCCCGCACAGTTAAAATTACAGACCCCGACACTTACAAGATGATTAAACACTGTCTCCTGCAGTCCCTGAAGCACATTCAAATTCTGAGAGACCAGCTGGTAGCTGCAGGGAAGAAGATCTCTTACCAGAGCAGAGTAAAAGACGAACCAGCCTACTATTGCAATGAGTGTGATGTGGAGGTTTTTAACCTGCTGTTTGTGACGAGTGAGAACGGCAGTAAGAAGTTGTATGTGGTGCACTGTGAGGACTGTGCTAGGCAACGCAGCCCCAATCTCTCCAACGTAGTGGTGCTGGAACAATACCGTATCGAGGACCTGATGAACACCTATGACACCTTCAGCTTGgccTTCAGCTCTCGGTGAACTCAACTCTGCCATCCATCCCAGCCATAACCAAAAGTCTTGCTTACCAGGACAattagtttatttgttttagttaaatctttgtttttattttcctgcatttgtaattttaaagtactactactactgctaatacttGTTGAACAGCCAATCATAAACCAGTTTACATCATGTTGTTTACAAAACCAATAAGCCAATAAGACAGCAGTCCAACATACCAACCTCTGACTGATCTTAATGGACTTTACATTGGAATGCAGTTTGTGCTGTCACatgtaattaatgaaaaatatggCATCTCGTACATTTATGtactttgcatttttattacttttgggttctctttctgtcttgaaTAACGAAATGTGTAaatgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75461 lncRNA upstream 50310 13135659 ~ 13135860 (+) True G63696
TU75450 lncRNA upstream 66493 13119468 ~ 13119677 (+) True G63685
XR_004577946.1 lncRNA upstream 259183 12922870 ~ 12926987 (+) True LOC117596991
TU75285 lncRNA upstream 351840 12801894 ~ 12834330 (+) True G63547
TU75255 lncRNA upstream 413367 12770726 ~ 12772803 (+) False LOC113540557
TU75429 lncRNA downstream 458 13199007 ~ 13199862 (+) True G63666
TU75479 lncRNA downstream 15428 13213977 ~ 13219859 (+) False tmem88b
TU75440 lncRNA downstream 60325 13258874 ~ 13266479 (+) True LOC117597082
XR_004578006.1 lncRNA downstream 60842 13259391 ~ 13267034 (+) False LOC117597082
TU75438 lncRNA downstream 78272 13276821 ~ 13277704 (+) False slc16a13
XM_026936299.2 mRNA upstream 71003 12980849 ~ 13115167 (+) True dnah2
XM_026935904.2 mRNA upstream 209733 12951069 ~ 12976437 (+) True serpinh2
XM_026936981.2 mRNA upstream 324953 12795941 ~ 12861217 (+) True efnb3b
XM_026937280.2 mRNA upstream 397945 12777177 ~ 12788225 (+) True wrap53
XM_026937160.2 mRNA upstream 418266 12742257 ~ 12767904 (+) True gigyf1a
XM_026936249.2 mRNA downstream 8108 13206657 ~ 13214043 (+) True tmem88b
XM_026936242.2 mRNA downstream 34085 13232634 ~ 13242400 (+) True trip6
XM_026936240.2 mRNA downstream 34085 13232634 ~ 13242400 (+) False trip6
XM_026936241.2 mRNA downstream 34085 13232634 ~ 13242400 (+) False trip6
XM_026936243.2 mRNA downstream 34337 13232886 ~ 13242400 (+) False trip6
TU74787 other upstream 891047 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1488875 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2522763 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2620446 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2654642 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 219828 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 272220 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 360074 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 507027 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1057195 14255744 ~ 14269340 (+) False brms1

Expression Profile