RNA id: XM_034303445.1


Basic Information

Item Value
RNA id XM_034303445.1
length 2182
RNA type mRNA
GC content 0.48
exon number 9
gene id pcolce2a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29359500 ~ 29371526 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCATACCCATAGAAATGCTAATGAGATAATTAGCATAACGAATGCATCCGGCTCAGAAGCTAATTATTGGTCGAATCCTAAACGGACATGTAGTGCGCTGAGAATGGGCCAGAAACCGTGGTGTGACAGAGGAGTATGAAGTGTGTGCAAGAAGGGAAATAGGGAGTGATTTGGGACGCGGCCAATGTCATGTTCACTCCGAGCTCGAGATGTGGACTGTAACGTGGAGTGTTTGGGTTCCGTTAGTTTTCGGCTCGGTGTTTGGTCAAAGACAGCAAAGGCCGATGTTTACGTGTGGTGGAAACATTACTGGAACGTCAGGCCTCATTGGGAGTCAGGGTTACCCCGGAGTTTACCCCCCTAACACCAAATGTGTGTGGAGAATCACGGTGCCTCAGGGCAAAGTGGTGTCCCTCACCTTCCGTTCCCTCGACCTAGAGAGCGACGGACTTTGCCGCTACGACTACGTGGATGTGTACGACGGATTCGTTAACAGCCAGCGGCTCGGGCGCTTCTGTGGCACGGCACGGCCCGGAGCGCTGATCTCCAATCACAACAGGATGCAAGTAGTGATGGTTTCGGACGCCAACACGGCCGGGAGCGGCTTCCTGGCCGGATACGCCGCTGTTCGGCCCAATGCGAGGGGGGAGCGGTATTGTGGCGGACTCTTGGACAAACCCTCGGGAACCTTCATGACCCCTAACTGGCCGGAGAGAGATTATCCTCCAGGTGTGACATGCTCATGGCATATTATAGCACCTAAGCACCAGATAATAGAACTGAAGTTCGAGAAGTTCGACGTGGAGAGGGATAACTACTGCCGCTACGATCACATGGTCGTTTACAACGGCGCGGAAATGAGCGAGGCGACCAGGATCGGGAAGTTCTGCGGCGACAGCCCTCCTGCGCCGATCTACTCTGACGGCAGTCACCTCTTCATCCAGTTCATCTCTGATCTGAGCCTCACCGCCGACGGCTTCATCTGCCATTACACCTTCAAGCCGAAGAACTCCACCATCACAGGCTCCCCCGTTCCCGTTACTGCAGCCGCTCCCACCACTGCAGGGCCCATAGCACTGGCGTACTCTGAAGCTCTCTGCAAGCAGAAGTGCAAGAGGAGCGGAACGATCGAAAATCATTACTGCTTAAGCAACttcgTACAACACAATACTGTGGAGGATGAGTTGATATCCCGGTGTCGTCTCGTCACAGTGCTGACGGGAACACTCGTCTCGGCTGCCATGAGGGAACAGAGCGTGCTCGCCACCTTCTCCATCACCAACGTGTACAAGGAAGGGAACCTGTCCATCCAGCAGGCCGGAAAGAGCATGAGCACGAAAGTCACGATCCTGTGTAAGAAATGCCCTTTAGTCAGGAGAGGTCTGAACTACATCGTCATGGGTCACGTCGACGAGCAGGGACAAGGCATCGTTTCGCCGCAGAACTTCGTAATGCCCTTCAAGACTAAGAAGCAGAAGGACCTGGCTGTGTTGAATAATGTCCGCTGCTGATGGTAGGCGGTGGCCATGTTGGATCTGTAGACTCATCAGATCATCCTCTGGATCTGTACACACCAGATTGGGAGTCATTGCAAGAGCATATTTTTCAGACCATAAGTCTGCTTCGAGAGGTAATCAGTATGTATGTTGATTCGTTGTATAtatcacattaatatatatatagaatcattcatttcatttgtagAACCTCTCAAATGACACTTCTGAGCTCTAATAACTTTCCCACACTATCAAATTGCCATATTACAATTATACAATATTGTAATGTACTTATAACATAAATGTTGCTTTGACATATAAAATGTGTCTTGTAGTCTGGAAAATATGACACGCATGCTCAttaatttttgacatttttattcatagaATCATCAGTACAGCGGTACTGtaatttattcatgaacaacataacattaaaaatgtacatttagtcttttttttgaGCATTAGTACATTCATTCTGTGTATGAAGagaatcatttaaatgtttctgcgaattcatgtgaatttttatttgtacaagCCGGCAGTTGTATCTGAGGATCTCCGAAGGTTTTATGCCAATGACCAGAAGGAAACTGCTAAATGCTTAAATTGTATCCTGGCCcatttggataaaagcatctgactaaataaataaatgcaaatgttatGGACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86901 lncRNA downstream 39166 29273589 ~ 29320334 (-) True G73327
TU86893 lncRNA downstream 141342 29216270 ~ 29218158 (-) True G73319
TU86892 lncRNA downstream 144449 29213553 ~ 29215051 (-) True G73318
TU86820 lncRNA downstream 170160 29188158 ~ 29189340 (-) True G73249
TU87006 lncRNA upstream 168569 29540095 ~ 29540356 (-) True G73423
TU87022 lncRNA upstream 236075 29607601 ~ 29607805 (-) True G73439
TU87036 lncRNA upstream 299661 29671187 ~ 29674270 (-) True G73452
TU87041 lncRNA upstream 339560 29711086 ~ 29712194 (-) True G73457
TU87042 lncRNA upstream 341367 29712893 ~ 29713446 (-) True G73458
XM_026936180.2 mRNA downstream 22797 29333119 ~ 29336703 (-) True chst2a
XM_034304142.1 mRNA downstream 36583 29300306 ~ 29322917 (-) False dipk2aa
XM_034304140.1 mRNA downstream 36583 29300306 ~ 29322917 (-) False dipk2aa
XM_034304141.1 mRNA downstream 36583 29300306 ~ 29322917 (-) True dipk2aa
XM_034303995.1 mRNA downstream 187579 29150521 ~ 29171921 (-) True usp33
XM_026937224.2 mRNA upstream 70589 29442115 ~ 29452793 (-) True mfsd8l2
XM_034303512.1 mRNA upstream 89515 29461041 ~ 29466020 (-) True kcnmb2
XM_026937229.2 mRNA upstream 89515 29461041 ~ 29464798 (-) False kcnmb2
XM_034303513.1 mRNA upstream 89515 29461041 ~ 29464711 (-) False kcnmb2
XM_034303979.1 mRNA upstream 147565 29519091 ~ 29530681 (-) True eif4a2
TU86878 other downstream 207119 29148638 ~ 29152381 (-) False usp33
XR_004577982.1 other downstream 474535 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 474535 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 477336 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 707075 28648324 ~ 28652425 (-) False LOC113540437
XR_003404076.1 other upstream 151868 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 152197 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 152983 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 153463 29524989 ~ 29525061 (-) True LOC113540703
XR_003404065.2 other upstream 193076 29564602 ~ 29575727 (-) False LOC113540665

Expression Profile