RNA id: XM_026936951.2



Basic Information


Item Value
RNA id XM_026936951.2
length 3152
RNA type mRNA
GC content 0.45
exon number 23
gene id si:dkey-33c9.6
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13486536 ~ 13500833 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CTCTTGACAGGAAGTAGAAGTGACAGTTTAGATTGGTTTGGACTCACACTTTCTCTCAGTTCTCTCTTAGCTCTGGTCTCTGCGCCACTGCTGATTGATGATGGAGCTTTTTGAAGACGCGTTGCAATATCTCATATCCTCCGGTATACCGGTGGATGAAAATGAAGCTGTAGATTCAGAATTCTCTCAGGATGTGTTTGGGGATGAGACCGACTGGATTCCTAACATCACTGAGGAGGCAGCAGCATTTCCGCACACACCGATCTGTACAAGCCCAGAGGACATGCTGGACAGAAGACTGCAGCTACTCAGAGAGATTTTAATCAGCGAAGAGACCTACCTGAATGAGTTGGAAACCCTGCTcatgCCTCTGAAGGCTCTCAGGGCCTCAGCTGGTACATCTCAGCCTGTGTTGTCCATTGAGCAGGTCCAGACAGTGTTCTACCAGCTGCCAGAGCTCTTAGATCTCCACACTGAGTTTCACAACAGCCTCAGAGCTAAACTACAGTTGTATTTAGATCTGGAACTAGGCATTCCTCTGCAGCTGCGCCATGAGAACCTTGACCTGTCTGTGGGAGACCTCTTCATCAAATTTGTGAGCCAGTTAGGAGTGTACCGAGGATTCATAGATAATTATGAGAATGCCGTAGAGATAGTGAAGAAATGCACCCAGTCAGACCCACGATTCCGAACTCTTGCCCAGAGCATGAAGTCCACCAAAGGATCAGACAATTCCAAAGCTATGTACACTTTTGAAGGTCtcctgtacaagcctctggacaGAGTGACTAAGACTACTCTTGTCCTGCATGATCTGTTAAAACACACTCCAGCGGATCACCACGACAGTGCGGTGCTACAGGAAGCCTTACGTGTCTCAAGCAGCTTCCTGTCTGGGGTTAATGAGGGATCACAGTGCAAGACATCTGTCACTCTTAGCAGAGGGGAgAGACGACAGCTTTTGCGTGATGGATTTGTGGTGGAGGTCTGTGATGGTGGGCGGAGCCTCAGACACCTTTTTCTCTACACAGATATACTGCTGTGTGTCAAGCTGAAGTGTGGAGCTATAGGgaggcAGCCTCACTACAGGTTTTGTTGGTATATGCCAATAGCGGGACTCAAGATGAACTGGGCAGCAGAGCAGGAAGCATCAGCTGACCTTCAGCTTAAAATCAGCAACATGAGAGTAAAGGTGTTCCACTTGAGGCGAGAATTCCGGCAGTCCATgaaagagaagaaagggTCGGTTTCTCGTGCCACTGATCGCTGTAGAAGGAAACTCGAAGCATGTGAAATTTGGCTTCTCACCCACAAACCATCTTTTATCTTAGAGCTACATAGCCCCAGCAGCAAGAGTCACACCATTCACTTACCTTCTCTGTATGAGCTGGACGAGTGGAGAGAAGCAATTAACAGCCGCAAAGCAGAAGatgtAGAGACAGTGCCCCCAGACCTACTCTCTCTCACCAACTCTTGTGTCAAACTAAGAATGACTCAACAGCTGCCTCTTTGCTGCCTGCGGCCTGACAGTGAGGAGAACAGcatgtgtgggagtgtgtgtgtgattgtgcattCAGCCTGTGGGCTACAGCAGCCAGCCAGTGTCTATGTGTGTGCTGAAGTTGATGGCTTTGAGATTTTTGACCGAAGAGCTCAGACTTGTCTTTCATCATATAGTCTGATGCCACAGTGGGATCAGgaGCTGGTGCTGAAGGTGGATGGAGCTCAGCACCTCCGCCTGCTGTGTGTCAATCAAGCAGAGGAGAACATTATGGGCAGAGCTACGATACAGTTAAGCCCTGTTGATATGCTAAATAAGTGGAAGAAGATGAACGTGAATTTGGGCTCCATAGAAGTGATGCTGTCAATCAAATACTCACCCCATCAGCTCGAGCCACCCAGCTCAGCCCCTCTCCAGCACAGGCCTGTATTCGGTGTGGTGATCGGAGATGTAGCAAGACAAGAGCGCGTGCTGGTTCCTCATATAGTGCGCGCCTGTGTGGACGAGGTAGAGAGGAGAGGAATGGAAGAAGAGGGAATTTACAGACTCTCAGGAGCCAGCAATGAGATTCAGACtctaaaacatgcatttaacaccaATTACTGGGAAGCTATGAGTAAGGTGAGAAATGTGGATGTGAATGTAGTGTCTGGCACTCTTAAGCTGTACTTGAGGCAACTGCCTGAGCCTCTTATTCCTGCTGCATATTTTCAGAGTCTCTCTAAAGCAATGGATCTGACTGACCCAAAACTCAGAGCGAACACCATGATGTCTGAGCTGCAATCCTTCCCTGACGTCAATCGCAACACACTTCTCTTCCTCTTACATCACCTTAAACGGGTGGCAGAGAAGGAGGAACTGAATAAAATGTCTCTGAGTAATCTGGCCACAGTGTTTGGCCCCACTCTCATGCGCCCCCCAGTGGCCAGTCTAGGTCAGTGCGCTCCACCAGTGGACATCTCTCAAGAGGTTGATGTTCAGGTCCACGTGATTTACCTCTACCTCCAGATCCCGAATCTTCCAGGAGCTCTCACTACAAGACCACTGGATACTGAGGAAGACCCATGAAAGTTAAATTAGTGCTGCGtgctatacatacatacatacgtacatacatacatacacacatgcatacacacatatataatggGAGCAATCATGAGGCAAAAAATCTTCTTGTCAAAGTTCACAGGCAATTTAAAGGAAATATATAccatgtatatttattttatttattttaaaaagattaattgTAACACCTTGTTCATTACCTATatgattattaatttaatggaaatgtaaataatttctaATATAAATTCTGAAATCCTTTGTTCAATTCCATTTGATAAATCGCTCTGACTGACAATCTGTAGACATCTAACTACACTAAAATTCCTGCCCCATTGTCATTGGAGTCCCTGAATATTTTGTGGGTTAATTAATCTTTCCTGCAGTTTCATATTTCAAACTGATGcagaaaatatgtaataatgccTCAACCATTCAGTAGGCTAGATTATTGCCACTGTATGTTTTTCACTAGTTCACTAGTTAACAGCATCAATTCCACAGAGATGATTAAAAGTTTAGTGAGATATGGATTGCCATAGAAACAACTGTAAATTATCAATAAAATGCTAGTGCTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75682 lncRNA upstream 18810 13459362 ~ 13467726 (+) True G63898
TU75685 lncRNA upstream 69095 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 98582 13387598 ~ 13387954 (+) True G63889
TU75437 lncRNA upstream 200702 13284541 ~ 13285834 (+) False slc16a13
TU75438 lncRNA upstream 208832 13276821 ~ 13277704 (+) False slc16a13
TU75739 lncRNA downstream 3627 13504460 ~ 13504719 (+) True G63936
TU75791 lncRNA downstream 69169 13570002 ~ 13572833 (+) True G63976
TU75783 lncRNA downstream 194816 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA downstream 194816 13695649 ~ 13748072 (+) True G63973
TU75843 lncRNA downstream 254711 13755544 ~ 13759751 (+) True G64025
XM_034303789.1 mRNA upstream 11499 13468552 ~ 13475037 (+) False LOC113539889
XM_026935990.2 mRNA upstream 11499 13468567 ~ 13475037 (+) True LOC113539889
XM_034303788.1 mRNA upstream 11499 13469819 ~ 13475037 (+) False LOC113539889
XM_026937015.2 mRNA upstream 35713 13443794 ~ 13450823 (+) True LOC113540489
XM_034303680.1 mRNA upstream 49940 13420533 ~ 13436596 (+) True acadvl
XM_026936560.2 mRNA downstream 32984 13533817 ~ 13553948 (+) True hdac8
XM_026936562.2 mRNA downstream 33321 13534154 ~ 13553948 (+) False hdac8
XM_026936564.2 mRNA downstream 57790 13558623 ~ 13561537 (+) False cited1
XM_026936565.2 mRNA downstream 58482 13559315 ~ 13561537 (+) False cited1
XM_026937097.2 mRNA downstream 63895 13564728 ~ 13569599 (+) True rps4x
TU75730 other upstream 11499 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 67840 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1191413 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1789241 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2823129 10657357 ~ 10663407 (+) True c4h4orf48
XR_003404009.2 other downstream 57790 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 204743 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 754911 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 1131197 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2522362 16023195 ~ 16039984 (+) False LOC113540079

Expression Profile