Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026936953.2 |
| length | 1296 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 3 |
| gene id | psmb5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 31528370 ~ 31533258 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0005839 | proteasome core complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02737 | PSMB5; 20S proteasome subunit beta 5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU87968 | lncRNA | downstream | 217461 | 31236413 ~ 31310909 (-) | False | G74256 |
| TU87974 | lncRNA | downstream | 251349 | 31247090 ~ 31277021 (-) | False | rem2 |
| TU87966 | lncRNA | downstream | 252896 | 31236413 ~ 31275474 (-) | True | G74256 |
| TU87963 | lncRNA | downstream | 301782 | 31225234 ~ 31226588 (-) | True | G74255 |
| TU87756 | lncRNA | downstream | 411934 | 31056485 ~ 31116436 (-) | True | G74060 |
| TU88199 | lncRNA | upstream | 33793 | 31567051 ~ 31650584 (-) | True | G74417 |
| TU88244 | lncRNA | upstream | 203034 | 31736292 ~ 31785757 (-) | True | G74458 |
| TU88271 | lncRNA | upstream | 211093 | 31744351 ~ 31745462 (-) | True | G74479 |
| TU88242 | lncRNA | upstream | 219863 | 31753121 ~ 31756304 (-) | True | G74457 |
| TU88243 | lncRNA | upstream | 219863 | 31753121 ~ 31756304 (-) | False | G74457 |
| XM_026936968.2 | mRNA | downstream | 25992 | 31379473 ~ 31502378 (-) | False | LOC113540461 |
| XM_026936967.2 | mRNA | downstream | 25992 | 31379473 ~ 31502378 (-) | True | LOC113540461 |
| XM_034304039.1 | mRNA | downstream | 58729 | 31379473 ~ 31469641 (-) | False | LOC113540461 |
| XM_034304040.1 | mRNA | downstream | 71847 | 31379473 ~ 31456523 (-) | False | LOC113540461 |
| XM_026936251.2 | mRNA | downstream | 164099 | 31360647 ~ 31364271 (-) | True | LOC113540063 |
| XM_034303857.1 | mRNA | upstream | 5281 | 31538539 ~ 31544634 (-) | True | LOC113540064 |
| XM_026935889.2 | mRNA | upstream | 176806 | 31710064 ~ 31727552 (-) | True | nmnat2 |
| XM_034303863.1 | mRNA | upstream | 1290300 | 32823558 ~ 32825567 (-) | True | LOC117597140 |
| XM_034303864.1 | mRNA | upstream | 1439527 | 32972785 ~ 32977700 (-) | True | LOC117597141 |
| XM_026912180.2 | mRNA | upstream | 1597829 | 33131087 ~ 33135775 (-) | False | c4h14orf119 |
| TU87656 | other | downstream | 752551 | 30773463 ~ 30775819 (-) | True | ccl20l |
| TU87613 | other | downstream | 784544 | 30741669 ~ 30743826 (-) | False | LOC113540055 |
| TU87233 | other | downstream | 1505845 | 30019506 ~ 30022525 (-) | True | G73619 |
| XR_003403975.2 | other | downstream | 1797513 | 29724588 ~ 29730857 (-) | True | zgc:110366 |
| XR_003404065.2 | other | downstream | 1952643 | 29564602 ~ 29575727 (-) | False | LOC113540665 |
| LOC113540068 | other | upstream | 333824 | 31867082 ~ 31870008 (-) | True | LOC113540068 |
| LOC117597010 | other | upstream | 337260 | 31870518 ~ 31871874 (-) | True | LOC117597010 |
| TU88351 | other | upstream | 337901 | 31871159 ~ 31871639 (-) | False | LOC117597010 |
| TU88350 | other | upstream | 341051 | 31874309 ~ 31874827 (-) | True | G74547 |
| TU88353 | other | upstream | 346776 | 31880034 ~ 31880556 (-) | True | G74550 |
