RNA id: XM_026936958.2


Basic Information

Item Value
RNA id XM_026936958.2
length 2203
RNA type mRNA
GC content 0.41
exon number 14
gene id ncf2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22329268 ~ 22338376 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAGTTCAGTTTCATGTGTTCATGAGATGATAAAAAGGGAAGAGTGGTTTTCACTAAGGTTTCAGCTGCAGCCGAGGGAACATGTCCTTCGTGAACACTCTGCGTCAGTGGGATGAAGCAGTGGCTTGTGTGGAGAAAAAGGACACAGTCTCTGCTCTCGGGATATTCCTGGACATTGAAGAAAAGACATCAAAGATCAACTTCAACATCGGATGCCTCCATCTACAAAACAATGAGCTGGATGCTGCTGAGAAGGCATTTGACAATAGCATCGGCAAAGATCAGCATCTGGCCGTTGCTTTTTTTCAGCGGGGAATTACATTCTACAAAAAAGAAAGGTTTGAAGAGTCACTGATGGATTTCCAGCAAGCTTTTAAGGAGCTTAGAGGGAATCACCTCATAGACTACAAACCTCTTGGACTGATGTATAAACTTTATGcttgtgagGTGCTGCACAATATTGGACTTGTCTATGCGCAAATGGGGAAATGGGAGAATGCTCAGGAAAAACTGCTTTTAGCTCTTAACATCCGTATAGAATCCAAATTCAGCCACATCGACAAGGCTCTGGAATCCATTCTGaagcaGAAACTATTTCCTCTGGTGGTGATTCGCCCAGAGCTTATGTTCAAACCCAATAAGCACTATGTGGCAGAGCTGGAGAAAAAGGACTACCTTGGAAAGGCCAAGGTTATATCTTCTGTGGTTCCTGCTGATAACTTCTCAGGTTTTGCTCCTCTTCAGCCTCAAGTTGAAGATGTGCCAGCTAAACCCAAGGCACCAGAAGTACTGAGAGCTCTTGAAGGTGAACCACACACTGTTCTGTACGAGTTCATTCCCGAGACCAAAGAAGAACTGGCTGTGTTACCAGGCAACATCGTCTTCGTTCttcagagagggactgacaacTGGGCGTCTGTTATTTTCAACGAAAGGAGAGGTTTGGTTCCCTACAATTTCCTGGAGCCATTGGACATTACAGTGGCCTCAAAAATGGTGCAGGTTGCACCATCCAGCAGCAATGAAGATATACCCGATCCACCAAGAAGAGCAGCACCCAGTAAACCTGTGAGTAAAGCAGGTCAGAAGGCTGCCACAACAGAGACTAAAGCTGATGATGATTTCTCAAAATGCATTGTGAAAGTGCACTTCCTGTTTACCATATCCATCTGCATTGCACCAGGACAGCCATTTAAAACCGTCCTCaatattatcagcaataaacTCAAGCGACCTGCTTCTACACTCACTCTGAGGTATTTTAAGCCTGGATCTACTGAGAAAGTAACAGTCGAAGAGTCAGAGATGGAGGTGCTGTGGACCTGCGTGAGCAACAATCGCCTCACACTGTGGTGTTCAGCCACCGAGGATAAAACTATAACTCAGAAAAAGATGGTGGCTCTGTATGCTTATGAGGCATCTACACCTGAAGACCTGGCCTTTGCTCAAGGTGATGTCATCACTGTCCTGTCTACAGTGAATGAAGAGTGGATTGAGGGCGAGTGCAATGGGAAGACTGGCATCTTTCCATCATCTTTTGTTGTAAATCATGAAGATAATCAGTAGATGGAGACAAGTTTgactgaaaaataacaaaatcttAACACGAAAGATTACTGGATTATTTAAAGCTTAAGTGTAATTTAACCAGCAATGCTGAAGTGCACCTATAGAAAGGGTCACTGTATGTCTGCACATACTTGCAGTCCTTTTCTTATAGACTTggataatacaatacaattattttatgaacatatttTAGCTTTTGGAAATTACTTGTGTACAAATTTTTTGCCATTAAGTTGCAAatgaatcactttttaaaatataccaAAGAACCTTTTATAATTGATCACCACCACTAAactgtaagcaataaaacatgatgcaTTATATGCTATTACCTCACCATATCTGTTATATAACTgcactttttaatccatttattattggtctcagattatgtggagcatccaaaATACAAGTCTCTGTTACTGAGCTGTTACTAGtaacattagaatgagcacattaatagaCTGTAAACCtattatttgaattacagctggctgtcagaggtgctgtcacaaaaaattaatcaacaatttctgagcaatcagaataGGGAatccaacagcactgtggtgtaatacATGTTCAACTGCTTTTGACAATGTGTACTTAAATAAAAACCAGCAACAGCAA

Function

GO: NA

KEGG:

id description
K08010 NCF2, P67PHOX; neutrophil cytosolic factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81775 lncRNA upstream 84443 22244588 ~ 22244825 (+) True G68947
TU81502 lncRNA upstream 411492 21914806 ~ 21917776 (+) True G68687
TU81415 lncRNA upstream 566986 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 567039 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 579949 21732946 ~ 21749319 (+) True G68621
TU81789 lncRNA downstream 44718 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 54463 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 188952 22527328 ~ 22527556 (+) True G68999
TU82061 lncRNA downstream 311567 22649943 ~ 22652447 (+) False LOC113540463
XR_003404049.2 lncRNA downstream 588434 22926810 ~ 22938741 (+) True LOC113540593
XM_034303791.1 mRNA upstream 11977 22272475 ~ 22317291 (+) True prkdc
XM_034303204.1 mRNA upstream 60876 22259992 ~ 22268392 (+) True abcf2b
XM_026936557.2 mRNA upstream 89644 22209820 ~ 22239624 (+) True smarcd3b
XM_034303842.1 mRNA downstream 25306 22363682 ~ 22364458 (+) True LOC117597114
XM_034303926.1 mRNA downstream 29354 22367730 ~ 22382067 (+) True kif9
XM_034303927.1 mRNA downstream 29354 22367730 ~ 22382067 (+) False kif9
XM_034303843.1 mRNA downstream 145909 22484285 ~ 22495110 (+) True LOC113539999
XM_026936303.2 mRNA downstream 159182 22497558 ~ 22501861 (+) True atpsckmt
XR_004578015.1 other upstream 566967 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 980128 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1770419 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2520650 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3369451 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3559759 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile