RNA id: XM_026936959.2


Basic Information

Item Value
RNA id XM_026936959.2
length 2097
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC113540455
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20069061 ~ 20075035 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCAGATTAGAGCTGCTTTCAGTTACAAGCACAGCACACTGGCTGAATATCGCAGTCTCATCAGGCTGCTTTAATCAGTGATCTCGAATTGTTTTGGAGCAGTTTATAACGGATTTAGCGTCTCTCTGAGTTCACATCCTCTCCtcggattttttttaaatatatatacaccacaCATGAAGAGCTTTTGAGGAAACTCTCCTCCTATCTGTGGATTTCCCTCAGTGATCCGGTATGAAGCTCCTAGGCTGGGATGGCTCTGTGGTGCTGATGTGCTTGTCCTTCACTCTGGTTGGAGTTGACAGCTTATCAGGCAGTTTGCCTCCTCCAGAAAATCTCAGCCTGTCATGGGACCCACGCAATTTGTCTGTGCATATACACTGGAGAGAACCAGCTGGCTTGGACACAAAATGTAAAGTGAACTATACTTTAGCAATATATTATGAGaAATGTCCTCCCAGACAAAATACTCCAAATATACATCGAACAAGCGATTTGAGCTTTAATCATCCCTTTTCTAAAGAGGATGAAATATGTGTTGGCCTAACAACAAACCCTATGGTCTGTGAAAACAAACCTGCCAGCAAAGAAGTATACAAAGGCCTATCTCCACCCCTAGCCTTAGTGAAGAATTTCAGTTGTGTTTATTATgctgaaaaaaagatgaactgCACATGGACTATAGTCAAAAATACCCCCGACCTTCAGCTCTTTTACAGGgaagtgaataaaaacaaagacagcCTAAAGCATTGTTTGTCATATCTCACCTATGGAACCATGAAGACAGGCTGTCACCTTCATGATGAAAACCTTACGACTTCTGCAAAGGTTTACTTTGTCATCAATGGAACTGGAGACAATCACCTGATTAACAACAGATTTATGATAGAAATACGTGTCGCAGtgaaaCCGCCTAAGCCCAAGGTCAGCATCACGCAGGAAGGCGAACGCCTCCATTTTCAAGCAAGCACTCCCAATTTTGTAGCACCACAATGTTTGAAGTACAAGTATATGTACAGCAAATGCAATGAAAAGAGTGAAGTGGtcgaaacagaaaaaaactcaaCACTTGTGGAATACGACACAGCCTGCAAGTACGCTGTTCGAGGACAGGTCATATACTCAAGCTACTGCGGGGGGGACGTAGACATTGAGAGTGACATGAGCGAACCTGTGTATTATGGTGAGGATGGTGACCCAAATTTGGCATTTAAAGTGGTTATGATCATCACCCCTTTAATAGTGTGCTGCTGTCTCATAGCAGCTATAGTGCTGTTTAGGAGAAACAAGGATATCATTCTCCCAAAGATTCCTGAACCATCCCTGTTTTTCAAGGATATGCTTAACAGTACTTCTGATGGACTTTCAAAGAGCCTGGGTGGAGGAAAACTCTATGTGCCTGTTAAAGAGGTTGTGGTTAGCGGCGTGAGCCTGGAACCAAAGTCTATTCTTTTACACCCAAACCATGATACCTGCATCTAAACTACATAATGCTGTGCTCTGAAAATGGCCAGTAGTGGACTAACAGTGACAAAGTCTGGCTCTGATATCTAGCAGCTTAATCTTAAATCTATGCGCAACACTGTTGCCTTTTAAGAGCTACTTAGTTCTGTGCATTCCTTCATTCTTCAGGCTAGGTAAAGGACTGTCTTGCATTCACAATTGTATTAGATAGATTGTGATGTACTCAGTGGCCATCTGAGTTCATGTATGAATGAGGAAATCATGGTGACATCTCTTCACAAGCTCAGCAAAGCCAGACCACAGGCCCTGGGATCTGCTGAGTCCCGAAAATATTCAGTAAAGAAAGAGAACGATGATGTGCTTGCAAACAGCATTACTCAGGAGTATAGCTATATTTCCCCACTTGGGTAATAATGCAAATGGAAACGGGTAACCTTGTAAATAAAAGGACACTTAACATAGACATTTAGCCATCTTTTATCATCTGTACCTCTTCTGTACATCAGTGGCAATTTCAATCTAATATTATATGGCTGTATAGTGTTCATAggaatatttgtaaatattgacatacaGAAAGGTTTTCTACATAGTTTGctctgtaaataaaaagaacatgGTTAACTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80206 lncRNA upstream 1896 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 2023 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 103173 19962599 ~ 19965888 (+) True G67642
TU80168 lncRNA upstream 103975 19962599 ~ 19965086 (+) False G67642
TU80111 lncRNA upstream 151892 19916600 ~ 19917169 (+) True G67595
TU80393 lncRNA downstream 175023 20250058 ~ 20275675 (+) True G67827
TU80554 lncRNA downstream 405565 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 560313 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 617228 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 617228 20692263 ~ 20693111 (+) True G68070
XM_026937321.2 mRNA upstream 1841 19990684 ~ 20067220 (+) True dock11
XM_034303517.1 mRNA upstream 1841 19990684 ~ 20067220 (+) False dock11
XM_026937322.2 mRNA upstream 1841 19990684 ~ 20067220 (+) False dock11
XM_026937323.2 mRNA upstream 3369 19990684 ~ 20065692 (+) False dock11
XM_026937262.2 mRNA upstream 85784 19971311 ~ 19983277 (+) True ntn4
XM_026936960.2 mRNA downstream 6735 20081770 ~ 20087305 (+) True LOC113540456
XM_026935895.2 mRNA downstream 16852 20091887 ~ 20099077 (+) True LOC113539830
XM_026937098.2 mRNA downstream 27446 20102481 ~ 20129464 (+) True kirrel1a
XM_026937099.2 mRNA downstream 27447 20102482 ~ 20129464 (+) False kirrel1a
XM_026935939.2 mRNA downstream 72789 20147824 ~ 20154777 (+) True fcer1g
trnah-gug_5 other upstream 240171 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 240679 19828311 ~ 19828382 (+) True trnah-gug_4
TU79253 other upstream 1210409 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1860497 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1938556 18113444 ~ 18130505 (+) False frem1a
trnar-ucu_2 other downstream 25990 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 72760 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 277379 20352414 ~ 20352485 (+) True trnaa-cgc
TU80896 other downstream 945223 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 1252311 21327346 ~ 21327420 (+) True LOC113540699

Expression Profile