RNA id: XM_026936966.2


Basic Information

Item Value
RNA id XM_026936966.2
length 4512
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113540460
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16939461 ~ 16960809 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGACCTCTGCGCACAGCGCGCGCACATTACCGGCtcgcaggtggaaagttcatacTAGTGGGGGACATGAAATTAAAGACTTAGAAAACttttaacctctctctctctccctcactctccctCGCGCGCGCTTTGGGCATGTGTCCAGACCCCGCACGCTCCAGCGCGCTCCGCCTCGCTCCGGTGGGGGGGGCTAAAGGCCGCGCGCGCCCTGGCCCACCGCCTCGCTGCCTCCgctatataaacacacattggGAGCTCGCTTAGCGACTCGAACTCACATTGAGAAACtatgtgaaaagagagagagagagagagtgagagagagaaagagagagagagagcatcagAAAAGAAGGTAGACAGACGCACTACAGTCATTTGAAGATTTTCTAGCGCTCTGTAGACATCAGCATCCGTGCACAAGCCGCAGAGGATTATTCCTTTTTCTTTACTCCTTTATTTAACCTTATGACCAGTACTTGAATTTCAGTCTATCAAAAATAGTTTATAgctataaaaatttttttggggggagaGAAGTTTTGAGGACTTtcgtttttcacatttttctcacTTAGATACTTTTAAGTCGAGTTTGAAATTGTCATCAGCTTTCCCACGTGGTTATACTAGTCTGACAAGTTCACGGCAATTTGTCATTCCGCCAAAAACTTCCAACATCCACAGAGGGCTTTGGTTTAAAAATGATGTGCCAAAGTCTTACTTCGACTTATTTCTATTTGGACACAGTTAATTAAAATACCAACTTTTCATACCTTTACTGAACTTTTATAGTTTAGTTTATGTGAGAGATAAAGTTCGGAAAAGTCCATCATTTAGTCTATCATTTAGTGAAATACCTGCAGATTAGAAAAAAGTCGGTGCAGCGCACGTTCCGCTCTAAAGAAAGGCTGAAATCGACTCGAGCTTTCCCGGACACTCGTCGCAATGCTCTTCGGGAGTTTGGACCTGGTGTCTGCGCTGGCCACGCTGGCCGCGTGCTTGGCCTCAGTGGCGCTCCTGATCGCCGTGTCTCAGCAGCTGTGGCAGCTCCGCTGGACCGCCACGCGGGACAAGAACTGCAAGTTGCCCATGCCGAAGGGCTCCATGGGCTTCCCTATCATCGGCGAGACGTGCCACTGGCTGGTCCAGGGTGCGGGGTTCCATGCTTCGAGGAGGCAGAAGTATGGTAACGTGTTTAAAACTCACTTGCTGGGCCGTCCAGTGATCCGGGTGACAGGAGCAGAGAATGTGCGGAAGGTGCTGATGGGGGAACACACTCTGGTGAGTGTGGACTGGCCCCAGAGCACCAGCACTCTTCTAGGACCCAATAGCCTTGCCAACTCCATCGGAGACATCCACCGTAAAAAGAGGAAGATATTTGCTAAAGTCTTCAGCCATGAGGCGCTAGAGAGCTACTTGCCTAAGATCCAGCAGGTGATCCAGGAGACGCTACGTGTGTGGAGCTCCAACCCAAAGCCCATCAATGTGTACCGTGAGTCTCAGCACCTCTCCTTTCAGATGGCCATCCGTGTCCTCCTTGGTTTCCGCATTTCCGATGAAGAGATGCACTTCCTTTTCCACACCTTCCAGGAGTTTGTGGATAATGTTTTTTCATTGCCCATTGACTTGCCCTTCAGTGGCTACAGAAAGGGCATTCGTGCAAGGGACACCCTTCAGAAGGCCATAGAGAAAGCCATCAGGGAGAAGCCACTGTGTACACAGGGGAAGGACTATACTGATGCCTTGGACGTGCTTCTGGAGAGTGCCAAAGAGAATGGGACAGAGCTCAGCATGCAGGAGCTTAAGGAGTCCACCATCGAGTTGATCTTTGCTGCCTTTGCCACCACGGCCAGTGCCAGCACCTCTCTGGTCATGCAGTTACTGCGGCACCCAGCGGTGTTGGAGAAGCTGCGTGAGGAGCTGCGCAACTGCGGCCTTCTGCATGATGGCTGCTTGTGCCAGGGTGAACTGCGGCTTGACAACATCTGCAGCCTCAAGTACCTGGACTGTGTCATCAAGGAGGTGTTGCGTCTCTATGCACCAGTGTCAGGGGGCTACCGCACCGCCATGCAGACCTTTGAGCTTGATGGTGTGCAAATTCCTAAGGGTTGGAGTGTTATGTACAGCATCCGAGACACTCATGACACATCAGCTGTTTTTAAGGACGTGGCGGCCTTCGACCCTGATCGCTTCAGTGCAGAGCGCAGCGAGGATCGCGAGGGCCGCTTCCACTACCTGCCCTTCGGAGGTGGTGTGCGCTCATGCCTGGGGAAACAGCTGGCCACGCTCTTCCTCAAGCTGCTGGCTATAGAGCTGGCCGGGGGGAGCCGCTTCGAGCTGGCCACGCGGACGTTCCCACGTCTGGTCTCCGTCCCTGTGGTCCACCCCACTGACGGCCTCCGAGTCAAGTTCTTTGGCCTGGACTCCAACCAGAACCAGATCATGTCCAAGACAGACGAGATGCTGGGTGCCACTGTGTGAGAGGGGGAAAGTGGAGGAAGTGGATGTGAGAGTTATTTTTGACacttatgtttaatgttgttttgtCAAGTGGCAAAAATCTAGTGAGTTGAGAGAGACACTCTGCCTGTCAGTTTCAAGATGTCACTTTTGCCAAAAATGTACAGTCTATCTTtttctataaaaatgtaaaaaaaacacataattaaaaaaaaaaaacataaatgtaatgCAAAGACCATTAAGCGATGCTAAGACCATTAAGTGATGCTGTGAGAAAGAGGGCACAAGATGAAAGAATGTTAAAAGGAGGACTGTAAGTTTCAAAAAGAACGAAGGATGTAATGTGTGTCCAGCTAAGTAGATATCACAGGGTATGGGCAAGTGTGTGCTCACAGTGAAGTGAGGACATGAAGAATCATTCTTATTATAGCCTGAGGTCTAGTACAGGGGTATCTTtcagggtttgtgtgtgtgtgttattctcaTTTTTGTATGTCTGTAAAACAAATACTTACTTACATGTACATTTGGTTTTgatcatatgtgtgtgtacctatTTGGAGCGGTGGGGTGGCTTCAGGCATTTAGGAATGTAGAAAACAGTGTAAGCTAGAAAGAATAAGAGGAGGGTGTAATTACTCAGGTGTGTAAGTAGAATAGGAGGACTGTCTAGACTAACCCAATACTATTTTGTTTCTGTACCTGCACATAAGTGACaatttattatcatattattacttcaaacagtgtgtgtatgagtgtgtttgtgtgtgtgtcttagagaatgagagagaaaaagagagaacataaaaaaacactcaaCCTGTGTgctattataatttttttgtgttttttttttcattgatgtCACGTTGAATTCTCTCTGTCTTGTCTCCGTGATGTCAGGTTGCAtcaggtgtatgtgtgtgtctgaatagACATGAGACTCTCAAAACAAGCTATATTTTGGGGACGGAGAAAGCTCATACTGCAAAGTGTATATTCAGAAAGATCACTACAGAACACAGAGTTTGCAGGCCGCCATATTTGCTGCTTGAGAGTCAGGATGTTATTCACGTGTCAGAGCAGAGCACTGTTTGGCCTCTGCTGAGAGGGACTGTTCTTTTTCCTGCTGCTCCACCTTGCAACACAATGATGCAAATGGAAAAAAGGTCATTTGATGAAGAAAACAGATTTGCCGATCAtcagtgtgtggtttttttgttaaatggaACCTTCAATGCCACTTCACACGAACTATTTATGTGAGTGACTTGCAGTGAGATTGAAAGAGAGGGGCACTAGGACCATTggtggaattaaaaaaaaccctatggAAGAAATTTATCACTTCTTTCACACATCatgtgaaggatttttttttttttttttataaaacatgcCACTGATCtttctattattaataattgaatgaaatgaaataaaatctgctGCTTCAAATGTACCGCTTTCTAACAGGAGGTAGATAGCTACGGTAGTATGCAAGTGAACTTTGCCTGTTCTACATGCGAATGATGATTGTGTAGCTAAATAGCGATTGGGAAATCATTGCATTGtctaatattgtaatattattactattaatattattgtaataaatattattttaagtgttatttttgttatatttcagAATAGAGTTCTagtataaataaagtttgttggtaaatattgttatatttagaATGACATGAATGGCAGTTATATTGtaaacagtgtttaaatgttaatatggTTTTATGTTATTGTAATTattctatcattattattaccatCATTGCAtttagttaatattaataaacacagaagCACTTGGGGGTATGTTTATATTGAGTGCCATGCGACTACATGTTGATTATTGAGTTTGTCTgtacataatattttattttctttttacaaatccacatttcatttagtttaaatatgaatgttttatctcccttttctttttgttacaATGGTTCTTAAATGTACTTGGCAATTTTATAAACCCCTGTAATAAACTATAATGTGAAAAGCCA

Function

GO:

id name namespace
GO:0060365 coronal suture morphogenesis biological_process
GO:0021661 rhombomere 4 morphogenesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030278 regulation of ossification biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0048387 negative regulation of retinoic acid receptor signaling pathway biological_process
GO:0034653 retinoic acid catabolic process biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0060323 head morphogenesis biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K12664 CYP26B; cytochrome P450 family 26 subfamily B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77765 lncRNA upstream 168618 16770605 ~ 16770843 (+) True G65663
TU77754 lncRNA upstream 176000 16758260 ~ 16763461 (+) False LOC113539905
TU78081 lncRNA downstream 374688 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA downstream 396529 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA downstream 397677 17358486 ~ 17359569 (+) True G65939
TU78075 lncRNA downstream 441750 17402559 ~ 17403879 (+) True G65927
TU78076 lncRNA downstream 441750 17402559 ~ 17403855 (+) False G65927
XM_026936432.2 mRNA upstream 18515 16825208 ~ 16920946 (+) True exoc6b
XM_026936126.2 mRNA upstream 120927 16811400 ~ 16818534 (+) False zgc:101765
XM_034303409.1 mRNA upstream 120927 16815798 ~ 16818534 (+) False zgc:101765
XM_026936125.2 mRNA upstream 120927 16815851 ~ 16818534 (+) True zgc:101765
XM_026937161.2 mRNA upstream 135445 16776894 ~ 16804016 (+) True ppp2r5b
XM_026936043.2 mRNA downstream 224212 17185021 ~ 17189452 (+) True LOC113539921
XM_026936021.2 mRNA downstream 247694 17208503 ~ 17275182 (+) True si:ch73-211e3.1
XM_026936036.2 mRNA downstream 318677 17279486 ~ 17307870 (+) True mtm1
XM_026936037.2 mRNA downstream 318679 17279488 ~ 17307870 (+) False mtm1
XM_026936038.2 mRNA downstream 318692 17279501 ~ 17307870 (+) False mtm1
XR_003404112.1 other upstream 177586 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 177814 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 178123 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 178354 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 178642 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 648895 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 803652 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 1039349 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 1152635 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 1236503 18197312 ~ 18208564 (+) True G66492

Expression Profile