RNA id: XM_026936967.2


Basic Information

Item Value
RNA id XM_026936967.2
length 10289
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC113540461
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31379473 ~ 31502378 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agatggagagagagagatggagagagagagagagatgcgaTTTGTCCTGTGCATATTCTACTCTGTCCTGTCTCTGAACACCGGCACACTCACACCGCAGGAAAGAAACTCCataaagGGCGATCAAGCCTTCATGGGAAACTgagtgaagatttttttttgtcagaagaAGGAGATACTGTGGAAGAAAAGAAATAGGGGCCGTGTGACTGACACCTGCCCTCCAGCACTGGTGAAGGACGGGTAATGGAGGAGTAAAGACAGGTTGTACAAGGAGAGAGGTGCTGATGAAAGAATGAAGACAACCAGAAAACAAGCATACCCTTCTATTTACTGTCACTTCAATTAATAAAGCACAGTTTGCGATCACTCAACATGCCTGACCGAAGACTTCTGCTACTGATGTCCCTCTGCCTATGGGAGGGGATTGTAAGGGCAGAGCCAGTCACAAAGGTTGTGAGAAGGAGAGGACTGAGTCCAGTTCACTCGCAATTGCACGGGGTGACCAATCAGTGGGAGCAACCAAGTTTGGAGAAGAATGGAGTGCCACTAGTTAGGCTAAAGGAACTGATTAGTGCTGACAAAGTGGATGATAAGTTTGTAGGTCACTCTGAAGCTGAGCAGACCAATGAAGCTCTTTTAGTCACAAACCAGGAAGAACTGCATGACTTTAATGCTAAATATTCTCAGCAGGAGAATGAGGACTCCACTAAAATGGACTCAAGGGTACTCAAAGCAGTTGATAGTACCAGAGATTTGCTTGAGACCCGCAGGTTAAAGAATAACACTAAAAACGCTGAAATCCTGAAACGTGGAAGAGTTGATAAGGGAATTCCAGTTCGCCGCAAAATAGACTCCAGTTTGCACTTCAACAGAACCAGATACAAATCACAGCCGAGATTTAGAGCGAGGCCAAGCCCTGGGCTTCTTAATAATGCCATAGATCCGAAGGGAGTGATATTGGATTCGCCTCATAAATTAAACCTGACAGGAAACTTTGGCGTATTGAAGCTTATTTCTAAAGACAACCTTGTGCGAATTGTAAATTCCCAACTCCAGAATGGTCTGACCTTCCAGAATAAGATTAGTCACAGTAGGAAGAGAGATTTGATCGATATGGATCATGGGCAACTGGAGGAACccaaaataaaaagacaagacGGTTCTGTATCTCCAGCTGTACATGAATCTGATAATCATAACAAGACTTTAGGACTCTCTGTTGAGCCACAGTCAAGCACCATCACGAATCCTAATGTCAGTCCAGTTCATATTTTCAGGAGGCCAGTTAGCAATCTCAATCCAAATTCAAAAGATGAAGAGAAGAAGACAGAGGCTGAGTCTATAGCTACTGCGAAGAGCAAACACCACTTAACCCATGTGGCATCAACACCCCAAAGTGAACTCATGGCCAACATAGAGGCCATTCCTTTTACTAGTCATACCAATATCTCTGTGATTGTGCATGAAGGAACATCACACGCACCTTCTCAGGCAGTCTCAGACAAGAGCTACTTTCTCGACTCACAGACTGAGAGAACCGTTAATGCCAAAGAGGAATCAAGTCAAAACATGTCTGCTCCAGGAATGGAAATTAATGTCACTCAGGAACCGATAAGTAAAGCTTCAGATTTTGTCGAAGATAGTCACATTCTGCAACTGCGCCCAAATCCAGATGGTGAAGGCATGGACAAGGAGGATGTTTGGGAGCCGTCGGTCACCTGGCCTCTGCATGGTGGCCATGGCCTCGTGTTccaggagatggaggaggacgGAGGTAAAGGGTGGAGTCCAAAGGAAAGTGATGGGTCTCGATCGCGAAGCAGACGGAGTTGGATCTGGAACCAGTTTTTTGTTATCGAGGAGTACGCTGGTCCTGAACCTGTTCTCATTGGAAGgcTTCACACTGACATGGACAGAGGCGATGGGCGCACCAAGTACGTGCTTCGAGGCGAAGGGGCGGGGTCGGTGTTTGTGATTGATGAAAAGACAGGCAACATCCATGTGACGAAGCCCTTGGACAGAGAGGAGAAGGACGAGTACCGGCTTATCGCCACGGCAACAGACAGCCAGACAGAGCGTGCCCTGGAGCCCTCTTCCCAGTTCATCATCAGGGTGCAGGACATCAACGACAACCCGCCTGTGTTTGAAGATGGGCCGTACAGCGCTACCGTCTCCGAGATGGCCAACATAGgcaCTTCCATTGTTCAAGTGACAGCGACTGATGCTGATGACCCCACCTATGGGAACAGTGCTCGTCTGGTCTACACACTGGTGCAAGGCCAGCCTCATTTCTCTGTGGACCCACAGACAGgaatCTTGCGCACAGCAGTCCCTGATTTGGACAGAGAAACTCAGGATCAGTATCTCGTAGTCCTCCAGGCTAAAGACATGGGTGGCCATCTTGGCGGACTTTCTGGAACCACCACAGTTACTGTGAAACTGACAGACGTCAATGACAATCCGCCCCATTTTACCCAGAGCTCCTGGTTGTTCTCTGTGTCGGAGTTGGCGGCGCCAGGGGCGGAGGTGGGCCGGATCTCAGCAACAGACGCTGACCTGGGAGAGAACGCCAGGCTGGAATATACCATCCTGGAGGGGGAGTCTGGAGACACCTTCAGCATTAAAGGAGTAAACCAGGAGGCCATCATCACCCTCAATAAGGCTGTTGACTACGAGAGTCGGAGCTCATATTCCTTCTCTGTGGAAGTGATGAACCCAACTGTTGACCCACGTTTCCTGCGCCGTGGCCCGTTTAAGGACCGTGCCTCTGTCCGAGTGGCCGTACTGGATGCAGACGAACCGCCGCGATTCTCCCGGGCCCGGTACCACATGGAGGTGTCGGAGAACTGCCCTCCGGCATGCACCGTTGGACGGGTTAGTGCCGTGGACCCAGACACAGGACTCAGCAGCAACATCAGgtactCCATTGATCCTCAGTCAGATCCAGAGGCTTTGTTCCGCATCACCCCAGACACTGGGCTTATCACCACGACAACGGAGCTGGACCGCGAGCATGAGCAGTGGCACAATATCACCATCATTGCCACACAAAGAGATAACCCCAGCCAGGTTTCCAGAGTGCTGGTTGCCATAGAGACGCTGGACCTGAATGACAACGCTCCGGAGCTGGACCGACAGTACACGACAGCCATGTGTGACTCCGCCTCCACTGGACAGGTGGTGCAAGTGTTGAGAGCAATTGATAGAGACGAGGGAGGGAACGACAGCACGGTCTACTTCAACATCCCTGCAGAGTCCAGTGCCGCACTCAACTTCAGCATTAGAGAGAGTGGAGGTCCCACCGCAAGCCTGGTCCTAGTCTCACCCTTACAGGCGCTCTCCCGCTCTTCCACGTCCTCTCTGACGCTCCATGTTCCTCTGGTCCTCAGGGACGTATCCTCGGGTCTGACGAGCACGGCGACCGTCACCGTGTCAGTGTGTCCCTGTCTGAGAGGAGGTGCACGAGCCGGGGAGAAGGAGAAGCAGAGTGATGCAGAGTGGGAAAGGGAAACTGTGTGTCTACCCCAGCACTCCTCCCTGCCTTCTCCGGGTCTCAGCACAGCGGCCCTCCTGGCAATTTTAGCATGCGGGGCGACACTTTTGGctgtcactgctctctctctgtccctgcgCAGACAAAAAAGGGACTCGCTTTCTCCTCTAGAGGAAGACGATGTCAGGGAGAACATCATCACGTATGACGACGAGGGAGGCGGTGAAGCCGACACCGCTGCTTTTGACATCACGGCACTCCAGAGCGCCCCCCACAGTGCTCGCAGGGGATACCGAACCCTAGACAGTAGGAACATACGCCTCTCTCAGCGTGGCCAGGATAAATCACGGACATACAGCAGCTGGGCCCAATCAGGAGCTATGGATAGTGGGCAGTACCCCAGCCAGACTCCTCTATATGGTCGCCTGTGTTACAGCAGCCAGACCCTCCCTGTGCTACGGCGCTCGCAGGGTCCATACGACCCTGGCCTGACTGAACTGGGATATCGCGTTTCCGGTGGCCAGCCGGATCACTCCCTTGTAATCCATAACCAAGGTGCAATGGTGGGGCCGCTGGAACCGGGAGCCTTGTACATGGGGCCCAGTGAGGTGGGGAATAGCTCTAGAGAGGGAACTGCGTCCCAGGATGGAGCCACTGCGTCTGAAGAAGGAACGCCACAGAAAAATGATACCAAGGAAGATTCGGGCAGTGACGCCCAGCAGAGCCAGGATCTTAACTGGAAGCATAAGCTCATCCTGACCCACTTTAACCTTCCTGCTCCTCCCCGTCCCCAACAGGTGCAGTCAGATTCTGCTCCACGGGAACTGGTGCTGACTCGCTCAGGCTCACTGGCCAGGCCTGGAGCTTCAGGTGGCTGGGTGTGTGATTCAGCCACGCTGCCCATGACGGGGCGGCGCTCCTCACGTGCTGGGCTCTCACCAAAAAAGAGTGCAGCTGGCTCCACAGATGGCACAGATGGAGCAAACAATGCCATGCAATCTGTCAGCCGCAATTACACCACCGTCCTGCAGGGGGAGCAGCAGAAGGACTACACGGGCAGCTTGAGCCGAGGAGGATTGGAGATGGGAAGTAGTTTTGTGGTAGCGAGGCCAGAAGGGGGGATTCCACTGTGCGTCCCTGAGAGCACAGGGTTCGTGGCTGACTGGCGGGAACGGGTGGGGGCTTACAGCCTGGGCAGGAGGGATATGATGCCCCAGCTGCTGCCCTACCCTGGGCAGGGTCGAGGGGCATTTGGAGGGATCCTGGGATATGGAGGAGCTTGGCCTACAGTGCCTGAAGCTGCAGGAAGGGGCATGCAAGGAGGAGGTGGCCAGTCCCTGGCCTTGAGAGTTGGCGAGTTCCTGAGGCTACGTCTGGCGCAGGTGACCTTTGATCCGACGCAGCCGCCGTATGACTCGGTGCAAGTGTATGGCCTTGAAGGCACAGGGTCACGGGCTGGCTCGCTCAGCTCCCTGGAGAGCGAAGGAGAGAAGGAGTCCAACAAGGAGGAGTGGGGTGGTGGGCTGGAGGAGTGGGGTCCACGTTTCCACAAACTAGCCCAACTCTTCcaagaaagggagaaagaaatgGAGGATGAAAaggagagcgagacagagacaCCCAGGAATCGAAATAAGGAGAAACAGGAGAAAGATCAGCAGTCTGGAGATGAGAGGAAAGACAAAGACTGAGAGCGGGAGTCGGGGATGGTGTAAGGGTATGGGGGGATAAGTAAACGGCAATCAATACTAGAGTAATAGgtaaagaaggaaaagaagagagagcgCGCGCGAGAGAGAAATATAAAGGAAAAGTAATTGGGATggacacacaaaacaaacataagctaaatagagagaaagagagaggaagctACAGAGTGAGTGATTGATGCAATTTAAAGCAATATGTGTTAAAAAGCAGAACAGTGAACACAGAAGGAGAGACGGGGAACGCTTTGTTTCTCTTCAGAGTATTCACCATTCTCTAAGTGTTGCAGGCAGGGAGTGGGTAAAAAATGCCCATAGTACCTTTTCTAttcacagatagatagatagagagagagagagggagagagagatagtgcaGATGACttaaattatgtttttgggGCAATGTGCAAGACAATACAACCGCCAGGGAGTCTGGAAGAAAGTAGGCTATCATACCACGACTGATAAATACAAAGGAATACAAAAAGATGAGAGATAAAGGTTTGTACAGGAAGTGCTGGAGAGAATTAGTCTGCTCATGGTGTTGGCAAAATGGTTATCATGAAAATCGGCCTGCCCACACGTATAGGcgtttttccaaaaaaaaaaaaaaaaaagaaaaaaaagaaaaagtgaatcGTCTTACTTTCTTTTGATGCCTTTTCAATGCAAAACATCTTGACTTGGATTTCAAATGGACTCACTTCATACACATGAAAGAATTTCACGTTTGCAAAACTGGATATCAACTGCCATATTAGAAATCTAAAGAACGACTGACATGCATTTAAATGGGGATACAGGTGTAATGTGATAGTGTCAGTGTTCTTTTGCTGGATCTGTGTAAAGAATATGGGAATTGCAGAAACTTTAtgcttcatttcttttcattatccACTTTTTCGGTGATTACTAGCACTTTTTAGCACAGCAGTTATTTGCTGATTACTTTCAAAGTATTGACCAATTCTAGAGCAATTACCGAAGAGAAATATTCAGATGTCATGAATTTTTAATTGGCACAATTACTCAAGAGAAATCAGGAGCAGGACGCAAAGTCTCAGCTGGAATGCACTTTTATATGTGAAGCTCAATAATAGATATGATgatactgttgttgtttttccatataaaaaaaaaacagtataaatatCATGAcattgtatgtaaatgtaaatattgactACCATTGTGTAAAGTGATTACTGAGTACTGAGTGAGTACCGTAGTATTCAAAataacaacgtgaaaagtaatttaaaagAAAGCTAGAGGagataaaagattaaaatgtcATGTTGGATTACAGCACTGAGGGATGAAATCACCTGCAGAGGAATAAACTGAACCGAGTGGGCTTGTCTGGATTATTTGGGATTAACTCTACTGTAGGGCATCAAGCCTAACTGGAATCCAGAACTGATCCACCTGACGATGCTGAAGTCAGAAATAGTTTGCCCCACAACCAATGAGTGTCTGTGGATGTTTTGAATGCCCACAAATGTACAGAATTTCAACCAATCATCTGAAGATGGACACGTGGATGTAGCCATTTTTTCCATATTCTGTACAagggtgaacacacacacacacacacacacacacacacacacacacacacacacacacagtgttgcgTTGTGACAGAATACAAGTAACAGCGTTACATACtcagaatattttaaagaaactcCTCCAATGTTTacgttttaatcattttaaaagcactgaGCCACACTTTCTCGTTTATACTAcacattagaaaataaaatgttatgttaCTGTGGTTATATCAGCCCCAGATAACTCCCAGAGTCTGTGAGAATTACCTAAATTACCTTATTGTGTGCATGCTGAAACTTTCCTACAAGGTCACAAAGTGACTTATGacacagtatttgcaataaataccacTGTCATACAGCCATTTTAGGCAGCAAGGTGGTGCAGAGGGTAGCAGGTTGGTGTATATTCCCATCTCATGCACACctctgaccaagataaagcagttaatgaagatgaatgaataaatgaggcGAGTTGGAAGCCTGGTGCTGACTCCTAGGTAGTAGCAATGTAGACTACCTGGAGCAGCAAGCCTTGAAGTAATTCCCATGAGGAAGACACACTCTTTATAGACACTCCTCTTAGAGTGGCTCTTCATGGGAAGGGCTGGACATCTGGTCCACCTGTAGGCCAAGGTGATGACATTCACCACCCAGTGGCTCTGCATAGACACATTAGGCCACGTGTTTTCTTTTTCACGAATCTTTGGGATGGATCCTCTGGCCTAAATAGTACCATAGGGTGTGTACACACAACAAGGAATGCTCTACAGGCTCAGCTTCATGGAAAGCTCCAAGTTGAATTGACTGATTTACAAAATTGAGTGATATGACCGTGGGCAGAAATCTTGGGTTCAACCACGAGGTGATCCCTGAGTCATCAGGCCACCAACACATGCCAGGCGAACTAATTGCCAGAGCAAGCAGTTCTCCCATTATTTTTGCTGAAGTAATTGCTAGCAAAATGCAGTTGTCAGAGACACCCATTTCAGAACAGTGTCTTGCATAGGATCATAAGGAGGGGCCTTAAGGGACTCCAGTACAAGGGGGAGATCCCAATCTAGGCTCTTAGGGAAATGTGGATGGAGGCACCACAACCCTTTCAGAATGGCACAGAGATGCCATTCAAGCTGACATGGCAGCCACATATACCTATAGGGTCAGATCTAGCAGTCCCTGGAGAAAAGGTAGTACTTGGGGAAACACTTGATGCACCAGATCCATCTAAATAGGTGTACACCATTCACAGAATAGCTTCCACCTAAGCAGATTCATACCCCGTGTACTAGGTGCTCTTGCATTCAGGAATGTTCCTGGACTGCTGGTTCACAGTCTTGTTTAGGATCCGTCGCTGTATGGGGCTTGATCTACAAGATGGATGGGTGTCAACTCCCAGGCAAGGAAGATTTGCAGGGTTGCAAACATACAGCAGCATGGATTGTGTTAACCACACTTGTCATCATGTGTAAACCAGGTTGGTGGAGAGTCGGATTATATCCTGGCCTAGATGTTCCACCACTAGGACCAAGGTGTTGACCAGCTTCCCCACAGAGTTCCAATCTACAGACTTTCTGTGACATTTCAGTGCTAGCAGTAAAACAGATAATGTATTGCCAGTGTATGCCACATGTGATACAATATCATAAGTTCCCACTAGAACATCATTCATTTAATGCATCTGCTGAGACCACAGGCATGTGGCTCAGCCGGACCTGCATGTGATCCATCATATTAGCTAAATTGTGCGCCATGGATCTCTCTGTCCAAATCCTTCTTCAAAGCTCTCAATAAAATCCTTGAATTCCTTTACAAGCAGTGCTGTGCGAAATGGTGCACTGATGATGTGGGTTGTGCGCCACTATCTGATCCCACTTGGGCCCCTGCCCTTTTAAGATTGGCTGCCACCGTTAGTTTAGAGCATGTCAGTGGAACCTGGGAGAAATCCCATTTTCGGATGTTGCTGAGACCGAGAGCAATAAATAACGCATCGTATGGCTAAAAGGAAACCCACTTAACCACAATAGCAGCATTTAGACACACATCTGTTTGTTAGCTGGACAGAGGGAGCTGAAACCAGCTAACCTGGAAGACTCACCAATGTGTGGTATGGTGATGGATGCCAACTCAACCACACTAGTCTGATATAGTCAAATTCCTGCTGGCCGGTTAGATGACAGGGGGGGGGGTCATGAAATATTCAGAGATAGGAAGGATTGAGGTGATAGAGCCGAAGGAGAATGAGACCCAGTGGGAAGACAAAACAGCAAACTTGTAGAGCTAACTAGTGAACAGCACAGCGAGTGATGCCAATAAGCCTAGCAATACTAATGAAGGAAAGCCAATTTGTCACTAGTTGGCTCTAAGGAGTTCTGGTTTGTTTAACTAGAAAAACGCTCATAAATGTATAACACTAATCTCACAATGGCAGAACAGATGAAAGGAGACTATTGGCAGCTTTATAGGATATCTGTAACTCTGAAAGTAGTTGCTAAGCAGATAGCTCCATATGGTGTACACGTGCTCCAACATGTCCATGAGGCTGTCTTTATTGCAAACACTGCATCATTTTTGCAATGAGTGATCGCAACAATACAGCTCAAAAAGCTGGTTTTGGGTTTGTTTGGAATATTTTGATGGAAACAAACCCCTTCCACGCCACCGTTTTTAGCATCAGATTAATGATACTTATtacattcaccattaaaaaaGCAGATGATGAGGAAAACCATAACCTAGTGACTCTGCAGAACAGTGTTCATAGTAAAATTGGAGAATGATGATTCAAAATGTATTCGGAACaagtttcttttttatatattacaatGAAATACaattttgaatatatttagGAAGCTGTATTCAGTATTCACCCATTAATACCTTCTCAGAGTATTCTGaccaaacctacacacacacacacacctcctcaatGTCCTGCGTGATCTGATCATTAAGTGGGACGTATTGACTCAGAGCCACTGTGACTGGGCCAGACCAGAACTAGATCCACTGTATTAGTGTACAATCATGATAACGGGTAGAGGAGGAGGCCGAGCCACTTCACCCCTCACGTTTTATTCACCGAACACATTTCATCAGTTAATTATTAAAGCTTTGAGTttttctgttgaattctgaGTAAACCAAGAACACTAGTATTGCAGTTTCTCTCTAGAACCTACATTTACAAATGGTTTCAGTTCCTCTGCTCATTAGATGCGTGGAAAGCTGACACAATGCAATGCACTTATAAACTATACAGGATTTCATACATTAGCAATACATTTGTAACTGAATATTCATTTGTCATTTTGACTAGCATTGTGGTTGAGAATGTTGGGGATATTTGCTTTAAGGCGCTCCATGTCTCCAGCCACAATGGCTCTGCCTCCTTTTTTTCACCATTATTGATCCTGCTCTATGCAGAGTAATATTGAAATCTCACAATGCCATATGAAAAAgtctatttattatattattctgttgtattttctcttttcttttttgtaaatttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87968 lncRNA downstream 68564 31236413 ~ 31310909 (-) False G74256
TU87974 lncRNA downstream 102452 31247090 ~ 31277021 (-) False rem2
TU87966 lncRNA downstream 103999 31236413 ~ 31275474 (-) True G74256
TU87963 lncRNA downstream 152885 31225234 ~ 31226588 (-) True G74255
TU87756 lncRNA downstream 263037 31056485 ~ 31116436 (-) True G74060
TU88199 lncRNA upstream 64673 31567051 ~ 31650584 (-) True G74417
TU88244 lncRNA upstream 233914 31736292 ~ 31785757 (-) True G74458
TU88271 lncRNA upstream 241973 31744351 ~ 31745462 (-) True G74479
TU88242 lncRNA upstream 250743 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA upstream 250743 31753121 ~ 31756304 (-) False G74457
XM_026936251.2 mRNA downstream 15202 31360647 ~ 31364271 (-) True LOC113540063
XM_034303333.1 mRNA downstream 22501 31353902 ~ 31356972 (-) True LOC113540523
XM_026937089.2 mRNA downstream 34489 31290821 ~ 31344984 (-) False carmil3
XM_026936953.2 mRNA upstream 25992 31528370 ~ 31533258 (-) True psmb5
XM_034303857.1 mRNA upstream 36161 31538539 ~ 31544634 (-) True LOC113540064
XM_026935889.2 mRNA upstream 207686 31710064 ~ 31727552 (-) True nmnat2
XM_034303863.1 mRNA upstream 1321180 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 1470407 32972785 ~ 32977700 (-) True LOC117597141
TU87656 other downstream 603654 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 635647 30741669 ~ 30743826 (-) False LOC113540055
TU87233 other downstream 1356948 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 1648616 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 1803746 29564602 ~ 29575727 (-) False LOC113540665
LOC113540068 other upstream 364704 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 368140 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 368781 31871159 ~ 31871639 (-) False LOC117597010
TU88350 other upstream 371931 31874309 ~ 31874827 (-) True G74547
TU88353 other upstream 377656 31880034 ~ 31880556 (-) True G74550

Expression Profile