Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026936969.2 |
| length | 1253 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 3 |
| gene id | zgc:162171 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 11631976 ~ 11637570 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0005525 | GTP binding | molecular_function |
| id | description |
|---|---|
| K07918 | RAB32; Ras-related protein Rab-32 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU74256 | lncRNA | upstream | 20919 | 11610836 ~ 11611057 (+) | True | G62640 |
| TU74255 | lncRNA | upstream | 22707 | 11608756 ~ 11609269 (+) | True | G62639 |
| TU74121 | lncRNA | upstream | 26746 | 11590726 ~ 11605230 (+) | False | LOC117596972 |
| TU74113 | lncRNA | upstream | 26746 | 11602448 ~ 11605230 (+) | False | LOC117596972 |
| XR_004577942.1 | lncRNA | upstream | 167370 | 11463083 ~ 11464606 (+) | True | LOC117596988 |
| TU74260 | lncRNA | downstream | 17897 | 11655467 ~ 11705262 (+) | False | si:ch211-200p22.4 |
| TU74270 | lncRNA | downstream | 37743 | 11675313 ~ 11675695 (+) | True | G62654 |
| TU74587 | lncRNA | downstream | 225063 | 11862633 ~ 11863683 (+) | True | G62932 |
| TU74622 | lncRNA | downstream | 275280 | 11912850 ~ 11913106 (+) | True | G62967 |
| TU74638 | lncRNA | downstream | 297259 | 11934829 ~ 11937759 (+) | True | G62983 |
| XM_026936806.2 | mRNA | upstream | 12299 | 11613768 ~ 11619677 (+) | True | vbp1 |
| XM_034303238.1 | mRNA | upstream | 31625 | 11590715 ~ 11600351 (+) | True | LOC117596972 |
| XM_034303232.1 | mRNA | upstream | 49554 | 11549600 ~ 11582422 (+) | False | LOC117596971 |
| XM_034304105.1 | mRNA | downstream | 7331 | 11644901 ~ 11692597 (+) | False | si:ch211-200p22.4 |
| XM_034304104.1 | mRNA | downstream | 7332 | 11644902 ~ 11705336 (+) | False | si:ch211-200p22.4 |
| XM_034304101.1 | mRNA | downstream | 7333 | 11644903 ~ 11705336 (+) | True | si:ch211-200p22.4 |
| XM_026935951.2 | mRNA | downstream | 7333 | 11644903 ~ 11705336 (+) | False | si:ch211-200p22.4 |
| XM_034304103.1 | mRNA | downstream | 7333 | 11644903 ~ 11705336 (+) | False | si:ch211-200p22.4 |
| TU73719 | other | upstream | 968569 | 10657357 ~ 10663407 (+) | True | c4h4orf48 |
| trnak-cuu_21 | other | upstream | 1066252 | 10565653 ~ 10565724 (+) | True | trnak-cuu_21 |
| trnak-cuu_20 | other | upstream | 1100448 | 10531456 ~ 10531528 (+) | True | trnak-cuu_20 |
| trnan-guu_13 | other | upstream | 1100932 | 10530971 ~ 10531044 (+) | True | trnan-guu_13 |
| trnak-cuu_19 | other | upstream | 1136506 | 10495398 ~ 10495470 (+) | True | trnak-cuu_19 |
| XR_003403980.2 | other | downstream | 7332 | 11644902 ~ 11697295 (+) | False | si:ch211-200p22.4 |
| TU74787 | other | downstream | 654944 | 12292514 ~ 12295123 (+) | False | si:dkey-112a7.4 |
| TU75687 | other | downstream | 1780807 | 13418377 ~ 13418696 (+) | True | G63903 |
| TU75730 | other | downstream | 1833199 | 13470769 ~ 13475037 (+) | False | LOC113539889 |
| XR_003404009.2 | other | downstream | 1921053 | 13558623 ~ 13562266 (+) | True | cited1 |
